Wall clock time and date at job start Fri Apr 10 2020 18:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42904 * 109.46881 * 2 1 4 4 C 1.53002 * 109.47289 * 119.99752 * 2 1 3 5 5 N 1.46897 * 109.47418 * 307.68165 * 4 2 1 6 6 C 1.46907 * 110.99782 * 315.96358 * 5 4 2 7 7 C 1.50692 * 109.47047 * 295.73650 * 6 5 4 8 8 H 1.08002 * 120.00597 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99940 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99555 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00190 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47144 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46805 * 120.00095 * 11 9 7 14 14 H 1.48497 * 109.47223 * 240.00175 * 11 9 7 15 15 C 1.46897 * 110.99978 * 79.92015 * 5 4 2 16 16 C 1.53000 * 109.47231 * 72.25481 * 15 5 4 17 17 N 1.46899 * 109.47201 * 185.05466 * 16 15 5 18 18 C 1.47021 * 111.00062 * 293.63676 * 17 16 15 19 19 C 1.53098 * 109.25675 * 177.60843 * 18 17 16 20 20 O 1.43004 * 109.26088 * 56.84664 * 19 18 17 21 21 C 1.43019 * 113.74098 * 301.32838 * 20 19 18 22 22 C 1.47009 * 111.00162 * 169.99791 * 17 16 15 23 23 C 1.50697 * 109.47308 * 240.00388 * 2 1 3 24 24 O 1.20821 * 120.00014 * 265.00145 * 23 2 1 25 25 O 1.34232 * 120.00119 * 84.99349 * 23 2 1 26 26 H 1.08992 * 109.47523 * 63.57256 * 1 2 3 27 27 H 1.09002 * 109.47087 * 183.57350 * 1 2 3 28 28 H 1.09002 * 109.47272 * 303.56863 * 1 2 3 29 29 H 0.96702 * 114.00083 * 176.03208 * 3 2 1 30 30 H 1.09004 * 109.46748 * 67.68340 * 4 2 1 31 31 H 1.08997 * 109.46939 * 187.67591 * 4 2 1 32 32 H 1.09003 * 109.46703 * 55.73933 * 6 5 4 33 33 H 1.09003 * 109.46478 * 175.73490 * 6 5 4 34 34 H 0.97007 * 119.99737 * 179.97438 * 10 9 7 35 35 H 1.08999 * 109.47173 * 192.25704 * 15 5 4 36 36 H 1.08995 * 109.47034 * 312.24938 * 15 5 4 37 37 H 1.09001 * 109.46717 * 305.05485 * 16 15 5 38 38 H 1.08997 * 109.47111 * 65.05517 * 16 15 5 39 39 H 1.08996 * 109.50342 * 297.54619 * 18 17 16 40 40 H 1.08997 * 109.50285 * 57.67110 * 18 17 16 41 41 H 1.08997 * 109.50255 * 296.90667 * 19 18 17 42 42 H 1.09000 * 109.54062 * 176.80943 * 19 18 17 43 43 H 1.08998 * 109.50603 * 298.73964 * 21 20 19 44 44 H 1.09002 * 109.54391 * 178.62451 * 21 20 19 45 45 H 1.08999 * 109.50844 * 302.32905 * 22 17 16 46 46 H 1.09001 * 109.50356 * 62.41428 * 22 17 16 47 47 H 0.96696 * 116.99876 * 179.97438 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.4051 -0.1439 2.4415 6 6 1.3896 1.3234 2.3714 7 6 2.8044 1.8419 2.3859 8 1 3.6325 1.1507 2.4412 9 6 3.0420 3.1989 2.3274 10 7 2.0338 4.0406 2.2596 11 14 4.7958 3.8418 2.3461 12 1 5.7409 2.6993 2.4270 13 1 5.0544 4.6104 1.1021 14 1 4.9862 4.7266 3.5233 15 6 0.0485 -0.6766 2.6257 16 6 0.1308 -2.1310 3.0933 17 7 -1.2214 -2.7008 3.1611 18 6 -2.0165 -2.0473 4.2110 19 6 -3.4329 -2.6284 4.2072 20 8 -3.3619 -4.0455 4.3850 21 6 -2.5955 -4.7143 3.3796 22 6 -1.1706 -4.1544 3.3750 23 6 2.0323 -0.7103 -1.2305 24 8 2.3197 -1.8826 -1.1763 25 8 2.1604 -0.0406 -2.3867 26 1 -0.3634 0.4573 -0.9202 27 1 -0.3633 -1.0257 0.0641 28 1 -0.3634 0.5682 0.8563 29 1 2.9682 1.4244 0.0611 30 1 1.7932 -1.7809 1.1832 31 1 3.1213 -0.6038 1.3205 32 1 0.8967 1.6379 1.4515 33 1 0.8476 1.7223 3.2288 34 1 2.2009 4.9953 2.2188 35 1 -0.4762 -0.0833 3.3745 36 1 -0.4919 -0.6288 1.6804 37 1 0.7323 -2.7056 2.3888 38 1 0.5914 -2.1698 4.0804 39 1 -1.5531 -2.2241 5.1816 40 1 -2.0623 -0.9754 4.0187 41 1 -3.9155 -2.4046 3.2558 42 1 -4.0099 -2.1879 5.0203 43 1 -3.0537 -4.5512 2.4041 44 1 -2.5661 -5.7826 3.5939 45 1 -0.5989 -4.6206 2.5725 46 1 -0.6930 -4.3650 4.3319 47 1 2.4869 -0.5387 -3.1486 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833526752.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:14:43 Heat of formation + Delta-G solvation = -157.026951 kcal Electronic energy + Delta-G solvation = -29002.447909 eV Core-core repulsion = 24993.295638 eV Total energy + Delta-G solvation = -4009.152272 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.188 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.91539 -40.57998 -39.78363 -37.24204 -37.13589 -35.90285 -34.64005 -32.18957 -32.04326 -30.99226 -28.97772 -28.18877 -26.11181 -25.33055 -24.94904 -23.33402 -21.98927 -21.28677 -20.94131 -19.42167 -18.56065 -18.19219 -17.69300 -17.13321 -17.02216 -16.73460 -16.55329 -16.26483 -15.97603 -15.92254 -15.70364 -15.49911 -14.86060 -14.70047 -14.61653 -14.12723 -13.92957 -13.53920 -13.44820 -13.22571 -13.12819 -12.83463 -12.76209 -12.59670 -12.57529 -12.41723 -12.32271 -12.21418 -12.02659 -11.87360 -11.67913 -11.53418 -11.20272 -11.16779 -10.72826 -10.62302 -10.39880 -9.40981 -8.61444 -7.99916 -6.03012 1.06826 1.45493 1.49898 1.58326 2.03125 2.49056 2.68110 2.97936 3.24631 3.37150 3.46633 3.82705 3.87350 3.95650 3.97774 4.05696 4.22179 4.23706 4.26492 4.34902 4.42102 4.54000 4.59634 4.62689 4.69984 4.75266 4.79762 4.84717 4.90485 4.93065 4.96156 5.03863 5.08443 5.13311 5.41764 5.50366 5.72172 5.81421 5.92959 5.99664 6.19593 6.26178 6.41097 6.72447 6.81091 7.03773 7.10324 7.60717 9.11089 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.013578 B = 0.004206 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.662967 B = 6655.212920 C = 8007.921726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.117 3.883 3 O -0.514 6.514 4 C 0.061 3.939 5 N -0.534 5.534 6 C 0.190 3.810 7 C -0.493 4.493 8 H 0.054 0.946 9 C 0.020 3.980 10 N -0.923 5.923 11 Si 0.945 3.055 12 H -0.266 1.266 13 H -0.283 1.283 14 H -0.293 1.293 15 C 0.024 3.976 16 C 0.073 3.927 17 N -0.539 5.539 18 C 0.014 3.986 19 C 0.067 3.933 20 O -0.405 6.405 21 C 0.065 3.935 22 C 0.017 3.983 23 C 0.466 3.534 24 O -0.536 6.536 25 O -0.503 6.503 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.381 0.619 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.041 0.959 33 H -0.021 1.021 34 H 0.256 0.744 35 H 0.053 0.947 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.025 0.975 39 H 0.032 0.968 40 H 0.086 0.914 41 H 0.064 0.936 42 H 0.112 0.888 43 H 0.064 0.936 44 H 0.117 0.883 45 H 0.096 0.904 46 H 0.035 0.965 47 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.169 -14.388 -3.782 16.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.072 3.928 3 O -0.322 6.322 4 C -0.069 4.069 5 N -0.257 5.257 6 C 0.065 3.935 7 C -0.532 4.532 8 H 0.072 0.928 9 C -0.179 4.179 10 N -0.564 5.564 11 Si 0.772 3.228 12 H -0.191 1.191 13 H -0.209 1.209 14 H -0.219 1.219 15 C -0.103 4.103 16 C -0.055 4.055 17 N -0.265 5.265 18 C -0.114 4.114 19 C -0.010 4.010 20 O -0.324 6.324 21 C -0.012 4.012 22 C -0.111 4.111 23 C 0.308 3.692 24 O -0.426 6.426 25 O -0.316 6.316 26 H 0.089 0.911 27 H 0.111 0.889 28 H 0.103 0.897 29 H 0.231 0.769 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.059 0.941 33 H -0.003 1.003 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.044 0.956 39 H 0.051 0.949 40 H 0.104 0.896 41 H 0.083 0.917 42 H 0.130 0.870 43 H 0.082 0.918 44 H 0.135 0.865 45 H 0.114 0.886 46 H 0.053 0.947 47 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -7.937 -14.309 -3.358 16.704 hybrid contribution 2.043 0.674 -0.315 2.174 sum -5.894 -13.636 -3.673 15.302 Atomic orbital electron populations 1.22287 0.90259 1.03436 1.04166 1.21985 0.97290 0.84625 0.88863 1.86867 1.28052 1.21837 1.95408 1.22541 0.99753 0.98205 0.86354 1.62196 1.18464 1.09478 1.35594 1.19995 0.96862 0.81094 0.95582 1.21211 0.92715 0.91138 1.48145 0.92789 1.25484 0.99414 0.97260 0.95730 1.70070 1.31898 1.02326 1.52134 0.85720 0.81649 0.78348 0.77079 1.19067 1.20898 1.21935 1.22791 0.90777 0.94569 1.02203 1.21934 0.88665 0.95143 0.99728 1.62188 1.13969 1.04104 1.46210 1.22858 0.95412 1.00248 0.92897 1.22738 0.94756 0.80431 1.03084 1.87941 1.72780 1.20168 1.51471 1.22790 0.88951 0.97462 0.92003 1.22850 0.99078 0.87999 1.01209 1.24868 0.73218 0.85477 0.85653 1.90658 1.47677 1.18412 1.85876 1.84657 1.78417 1.47539 1.20954 0.91117 0.88900 0.89719 0.76853 0.89336 0.91432 0.94129 1.00320 0.93485 0.92822 0.90195 0.90472 0.95618 0.94936 0.89565 0.91743 0.86999 0.91803 0.86545 0.88555 0.94706 0.71732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.50 6.76 71.98 0.49 -4.02 16 2 C 0.12 3.99 0.93 -11.54 -0.01 3.98 16 3 O -0.51 -20.91 8.65 -135.70 -1.17 -22.08 16 4 C 0.06 2.15 4.21 86.30 0.36 2.51 16 5 N -0.53 -20.91 4.67 -900.80 -4.21 -25.12 16 6 C 0.19 9.10 3.89 85.55 0.33 9.43 16 7 C -0.49 -25.20 6.09 25.60 0.16 -25.05 16 8 H 0.05 2.74 7.06 -2.91 -0.02 2.72 16 9 C 0.02 1.04 5.46 84.66 0.46 1.50 16 10 N -0.92 -52.74 13.29 21.45 0.28 -52.45 16 11 Si 0.94 42.24 29.54 68.60 2.03 44.26 16 12 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 13 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 14 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 15 C 0.02 0.80 4.09 86.30 0.35 1.15 16 16 C 0.07 2.07 5.09 86.30 0.44 2.51 16 17 N -0.54 -13.15 4.73 -895.22 -4.23 -17.38 16 18 C 0.01 0.33 5.44 86.31 0.47 0.80 16 19 C 0.07 1.33 7.01 72.01 0.50 1.83 16 20 O -0.40 -8.98 10.83 -148.98 -1.61 -10.60 16 21 C 0.06 1.16 7.01 72.02 0.50 1.66 16 22 C 0.02 0.34 5.64 86.32 0.49 0.83 16 23 C 0.47 14.35 7.19 71.24 0.51 14.87 16 24 O -0.54 -17.82 16.69 21.98 0.37 -17.46 16 25 O -0.50 -13.01 13.18 -46.49 -0.61 -13.63 16 26 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.09 2.50 7.28 -2.39 -0.02 2.49 16 28 H 0.08 2.96 4.19 -2.39 -0.01 2.95 16 29 H 0.38 15.29 7.74 -74.06 -0.57 14.72 16 30 H 0.09 2.88 5.65 -2.38 -0.01 2.86 16 31 H 0.07 2.56 7.30 -2.39 -0.02 2.54 16 32 H 0.04 2.04 3.73 -2.39 -0.01 2.03 16 33 H -0.02 -1.17 7.90 -2.39 -0.02 -1.19 16 34 H 0.26 14.08 8.31 -92.70 -0.77 13.31 16 35 H 0.05 1.88 6.45 -2.39 -0.02 1.87 16 36 H 0.08 2.49 3.20 -2.39 -0.01 2.48 16 37 H 0.08 2.13 6.33 -2.39 -0.02 2.12 16 38 H 0.03 0.79 8.12 -2.39 -0.02 0.77 16 39 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.09 2.10 6.49 -2.39 -0.02 2.08 16 41 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.10 1.74 8.09 -2.39 -0.02 1.73 16 46 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.42 6.41 9.10 -74.06 -0.67 5.73 16 Total: -1.00 -64.77 355.62 -4.33 -69.11 By element: Atomic # 1 Polarization: 33.56 SS G_CDS: -0.23 Total: 33.33 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: 5.06 Total: 12.02 kcal Atomic # 7 Polarization: -86.80 SS G_CDS: -8.15 Total: -94.95 kcal Atomic # 8 Polarization: -60.73 SS G_CDS: -3.03 Total: -63.77 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Total: -64.77 -4.33 -69.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833526752.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.921 kcal (2) G-P(sol) polarization free energy of solvation -64.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds