Wall clock time and date at job start Fri Apr 10 2020 18:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47202 * 2 1 4 4 C 1.53000 * 109.47343 * 240.00202 * 2 1 3 5 5 N 1.46894 * 109.47489 * 54.08675 * 4 2 1 6 6 C 1.46899 * 111.00273 * 200.73963 * 5 4 2 7 7 C 1.50702 * 109.46989 * 75.67287 * 6 5 4 8 8 H 1.07995 * 120.00094 * 5.04074 * 7 6 5 9 9 C 1.37879 * 119.99764 * 185.04271 * 7 6 5 10 10 N 1.31507 * 119.99632 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 120.00018 * 359.97438 * 9 7 6 12 12 H 1.48495 * 109.47184 * 90.00254 * 11 9 7 13 13 H 1.48500 * 109.47169 * 210.00393 * 11 9 7 14 14 H 1.48500 * 109.47110 * 330.00109 * 11 9 7 15 15 C 1.46909 * 110.99759 * 76.78348 * 5 4 2 16 16 C 1.52999 * 109.46926 * 195.98821 * 15 5 4 17 17 N 1.46904 * 109.46952 * 180.02562 * 16 15 5 18 18 C 1.47015 * 110.99703 * 293.63219 * 17 16 15 19 19 C 1.53094 * 109.25390 * 177.60535 * 18 17 16 20 20 O 1.43023 * 109.25854 * 56.85507 * 19 18 17 21 21 C 1.43015 * 113.73340 * 301.32194 * 20 19 18 22 22 C 1.47016 * 111.00158 * 169.99914 * 17 16 15 23 23 C 1.50700 * 109.47035 * 119.99869 * 2 1 3 24 24 O 1.20824 * 119.99820 * 95.00252 * 23 2 1 25 25 O 1.34221 * 120.00045 * 275.00232 * 23 2 1 26 26 H 1.08998 * 109.47673 * 294.82938 * 1 2 3 27 27 H 1.09008 * 109.47104 * 54.82654 * 1 2 3 28 28 H 1.08998 * 109.47083 * 174.82333 * 1 2 3 29 29 H 0.96699 * 114.00159 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.47023 * 174.09044 * 4 2 1 31 31 H 1.08998 * 109.46977 * 294.08738 * 4 2 1 32 32 H 1.09008 * 109.46681 * 195.67031 * 6 5 4 33 33 H 1.08994 * 109.47226 * 315.67116 * 6 5 4 34 34 H 0.97006 * 119.99632 * 180.02562 * 10 9 7 35 35 H 1.09000 * 109.47125 * 315.98909 * 15 5 4 36 36 H 1.09000 * 109.46659 * 75.98783 * 15 5 4 37 37 H 1.09009 * 109.47075 * 299.99943 * 16 15 5 38 38 H 1.08995 * 109.47541 * 60.00008 * 16 15 5 39 39 H 1.08989 * 109.50664 * 297.54287 * 18 17 16 40 40 H 1.09002 * 109.50206 * 57.67791 * 18 17 16 41 41 H 1.09001 * 109.51150 * 296.91429 * 19 18 17 42 42 H 1.08999 * 109.54075 * 176.80387 * 19 18 17 43 43 H 1.09000 * 109.50692 * 298.73836 * 21 20 19 44 44 H 1.09000 * 109.54293 * 178.62494 * 21 20 19 45 45 H 1.09005 * 109.50546 * 302.32819 * 22 17 16 46 46 H 1.09000 * 109.50760 * 62.41013 * 22 17 16 47 47 H 0.96708 * 117.00077 * 179.97438 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.4374 -0.1160 -2.4444 6 6 1.4902 -1.0395 -3.5857 7 6 0.4414 -2.1083 -3.4159 8 1 -0.2533 -2.0569 -2.5906 9 6 0.3688 -3.1518 -4.3142 10 7 -0.5467 -4.0841 -4.1663 11 14 1.5700 -3.2402 -5.7420 12 1 2.7736 -4.0060 -5.3296 13 1 0.9218 -3.9188 -6.8929 14 1 1.9695 -1.8661 -6.1387 15 6 2.0847 1.1618 -2.7707 16 6 1.2033 1.9456 -3.7452 17 7 1.8507 3.2231 -4.0720 18 6 1.9181 4.0967 -2.8915 19 6 2.6513 5.3889 -3.2609 20 8 1.9816 6.0138 -4.3593 21 6 1.8985 5.1912 -5.5261 22 6 1.1577 3.8969 -5.1798 23 6 2.0323 -0.7104 1.2305 24 8 2.3197 -1.8827 1.1762 25 8 2.1604 -0.0408 2.3867 26 1 -0.3634 0.4315 0.9326 27 1 -0.3634 0.5920 -0.8401 28 1 -0.3633 -1.0235 -0.0927 29 1 2.9703 1.4236 0.0004 30 1 3.1249 -0.6304 -1.3037 31 1 1.7657 -1.7748 -1.1979 32 1 1.3020 -0.4889 -4.5075 33 1 2.4759 -1.5020 -3.6335 34 1 -0.5975 -4.8185 -4.7981 35 1 2.2232 1.7423 -1.8586 36 1 3.0542 0.9709 -3.2307 37 1 1.0648 1.3651 -4.6574 38 1 0.2337 2.1365 -3.2853 39 1 0.9086 4.3341 -2.5563 40 1 2.4575 3.5879 -2.0925 41 1 3.6777 5.1567 -3.5448 42 1 2.6543 6.0638 -2.4049 43 1 2.9030 4.9531 -5.8760 44 1 1.3567 5.7222 -6.3088 45 1 1.1419 3.2422 -6.0511 46 1 0.1357 4.1304 -4.8814 47 1 2.4861 -0.5391 3.1488 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833526754.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:14:49 Heat of formation + Delta-G solvation = -160.987511 kcal Electronic energy + Delta-G solvation = -28570.651461 eV Core-core repulsion = 24561.327446 eV Total energy + Delta-G solvation = -4009.324015 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.188 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.57975 -39.57476 -38.15334 -36.31367 -36.13956 -35.16396 -32.49682 -31.61792 -31.21611 -29.55624 -27.86769 -26.42240 -24.95144 -24.10615 -23.60691 -22.00420 -20.60897 -20.25298 -19.78632 -18.35037 -17.39929 -16.91164 -16.56193 -16.17484 -15.89244 -15.66759 -15.20600 -15.07751 -14.84904 -14.57177 -14.33892 -14.16560 -13.93579 -13.48159 -13.32094 -12.90671 -12.50736 -12.31863 -12.13161 -12.01818 -11.99403 -11.82334 -11.55967 -11.50999 -11.46680 -11.43397 -11.06041 -10.81269 -10.74829 -10.61221 -10.49066 -10.26332 -9.88602 -9.71019 -9.40547 -9.32208 -8.59245 -8.30994 -7.51534 -6.07539 -4.04804 2.16711 2.92605 3.25875 3.34100 3.35363 3.69299 3.85930 4.11566 4.39443 4.73006 4.85941 4.92252 4.99260 5.00717 5.09818 5.16685 5.22927 5.24810 5.30481 5.45708 5.50357 5.57700 5.64731 5.77495 5.82220 5.86607 5.94223 6.02772 6.09468 6.16709 6.24463 6.35206 6.37293 6.44555 6.62679 6.77245 6.82655 6.99327 7.08290 7.10526 7.39572 7.58425 7.77502 7.89571 7.95523 8.61600 9.02798 9.54503 11.05520 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.008362 B = 0.005464 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3347.861465 B = 5123.168738 C = 7961.601931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.159 3.841 3 O -0.534 6.534 4 C 0.049 3.951 5 N -0.515 5.515 6 C 0.162 3.838 7 C -0.509 4.509 8 H 0.082 0.918 9 C 0.070 3.930 10 N -0.898 5.898 11 Si 0.872 3.128 12 H -0.278 1.278 13 H -0.286 1.286 14 H -0.268 1.268 15 C 0.040 3.960 16 C 0.064 3.936 17 N -0.538 5.538 18 C 0.017 3.983 19 C 0.064 3.936 20 O -0.389 6.389 21 C 0.065 3.935 22 C 0.018 3.982 23 C 0.451 3.549 24 O -0.501 6.501 25 O -0.510 6.510 26 H 0.054 0.946 27 H 0.096 0.904 28 H 0.081 0.919 29 H 0.374 0.626 30 H 0.030 0.970 31 H 0.112 0.888 32 H 0.031 0.969 33 H -0.013 1.013 34 H 0.263 0.737 35 H 0.093 0.907 36 H 0.027 0.973 37 H 0.077 0.923 38 H 0.044 0.956 39 H 0.043 0.957 40 H 0.091 0.909 41 H 0.056 0.944 42 H 0.095 0.905 43 H 0.057 0.943 44 H 0.095 0.905 45 H 0.085 0.915 46 H 0.042 0.958 47 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.913 16.209 5.829 18.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.117 3.883 3 O -0.339 6.339 4 C -0.080 4.080 5 N -0.239 5.239 6 C 0.036 3.964 7 C -0.547 4.547 8 H 0.100 0.900 9 C -0.132 4.132 10 N -0.537 5.537 11 Si 0.699 3.301 12 H -0.204 1.204 13 H -0.212 1.212 14 H -0.193 1.193 15 C -0.088 4.088 16 C -0.064 4.064 17 N -0.264 5.264 18 C -0.111 4.111 19 C -0.013 4.013 20 O -0.308 6.308 21 C -0.012 4.012 22 C -0.110 4.110 23 C 0.292 3.708 24 O -0.388 6.388 25 O -0.321 6.321 26 H 0.073 0.927 27 H 0.115 0.885 28 H 0.100 0.900 29 H 0.221 0.779 30 H 0.048 0.952 31 H 0.130 0.870 32 H 0.049 0.951 33 H 0.004 0.996 34 H 0.073 0.927 35 H 0.111 0.889 36 H 0.045 0.955 37 H 0.096 0.904 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.109 0.891 41 H 0.075 0.925 42 H 0.113 0.887 43 H 0.076 0.924 44 H 0.113 0.887 45 H 0.104 0.896 46 H 0.061 0.939 47 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 6.037 16.232 5.326 18.119 hybrid contribution 1.572 -1.171 -0.243 1.975 sum 7.609 15.061 5.083 17.623 Atomic orbital electron populations 1.21619 0.88634 1.04476 1.03256 1.21301 0.97962 0.81490 0.87586 1.86625 1.26428 1.25004 1.95851 1.22461 0.95483 1.01113 0.88928 1.61663 1.53892 1.03630 1.04751 1.20273 0.95807 0.91659 0.88675 1.21021 1.15276 1.05246 1.13150 0.89972 1.24888 0.95383 0.95440 0.97488 1.69886 1.34088 1.12508 1.37183 0.86920 0.81689 0.78575 0.82884 1.20376 1.21194 1.19274 1.22442 0.94942 0.92028 0.99429 1.22071 0.95908 0.88497 0.99898 1.62174 1.53148 1.04325 1.06783 1.22803 1.00453 0.94029 0.93812 1.22683 0.95530 0.93604 0.89520 1.87956 1.78842 1.41375 1.22630 1.22649 1.00238 0.90564 0.87737 1.22750 0.96382 0.96242 0.95672 1.24844 0.74215 0.86391 0.85386 1.90763 1.45221 1.17515 1.85293 1.84640 1.79221 1.47441 1.20774 0.92660 0.88500 0.90001 0.77897 0.95185 0.87009 0.95115 0.99565 0.92672 0.88942 0.95480 0.90430 0.93767 0.93921 0.89122 0.92522 0.88724 0.92430 0.88706 0.89647 0.93936 0.73941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.90 8.50 37.16 0.32 -1.58 16 2 C 0.16 2.36 1.12 -91.77 -0.10 2.26 16 3 O -0.53 -6.68 9.98 -49.12 -0.49 -7.17 16 4 C 0.05 0.87 3.78 -3.83 -0.01 0.86 16 5 N -0.52 -9.71 3.39 -236.07 -0.80 -10.51 16 6 C 0.16 3.69 3.63 -4.98 -0.02 3.68 16 7 C -0.51 -13.80 9.06 -34.44 -0.31 -14.11 16 8 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 9 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 10 N -0.90 -26.99 13.96 55.43 0.77 -26.22 16 11 Si 0.87 21.17 27.37 -169.99 -4.65 16.52 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.27 -6.24 6.69 56.52 0.38 -5.86 16 15 C 0.04 0.63 4.69 -3.82 -0.02 0.61 16 16 C 0.06 0.99 5.02 -3.82 -0.02 0.97 16 17 N -0.54 -7.18 4.73 -234.31 -1.11 -8.29 16 18 C 0.02 0.20 5.44 -3.71 -0.02 0.18 16 19 C 0.06 0.66 7.01 37.21 0.26 0.92 16 20 O -0.39 -4.73 10.83 -35.23 -0.38 -5.11 16 21 C 0.07 0.69 7.01 37.21 0.26 0.95 16 22 C 0.02 0.22 5.64 -3.71 -0.02 0.20 16 23 C 0.45 6.54 7.17 36.01 0.26 6.80 16 24 O -0.50 -8.91 16.73 -18.75 -0.31 -9.22 16 25 O -0.51 -5.67 13.18 -44.41 -0.59 -6.25 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.10 1.60 7.64 -51.92 -0.40 1.20 16 28 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.37 3.46 8.83 45.56 0.40 3.86 16 30 H 0.03 0.50 7.98 -51.93 -0.41 0.08 16 31 H 0.11 2.38 6.79 -51.93 -0.35 2.02 16 32 H 0.03 0.71 5.66 -51.92 -0.29 0.42 16 33 H -0.01 -0.31 7.15 -51.93 -0.37 -0.69 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.09 1.28 3.20 -51.93 -0.17 1.12 16 36 H 0.03 0.45 8.05 -51.93 -0.42 0.03 16 37 H 0.08 1.34 6.44 -51.92 -0.33 1.01 16 38 H 0.04 0.72 8.12 -51.93 -0.42 0.30 16 39 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.09 1.00 6.38 -51.93 -0.33 0.67 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.09 0.99 8.09 -51.93 -0.42 0.57 16 46 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.40 2.70 9.10 45.56 0.41 3.11 16 LS Contribution 369.52 15.07 5.57 5.57 Total: -1.00 -32.75 369.52 -7.58 -40.33 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -6.07 Total: 6.75 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 0.47 Total: 3.60 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: -1.13 Total: -45.01 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -1.77 Total: -27.76 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.65 Total: 16.52 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.75 -7.58 -40.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833526754.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.657 kcal (2) G-P(sol) polarization free energy of solvation -32.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds