Wall clock time and date at job start Fri Apr 10 2020 18:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47202 * 2 1 4 4 C 1.53000 * 109.47343 * 240.00202 * 2 1 3 5 5 N 1.46894 * 109.47489 * 54.08675 * 4 2 1 6 6 C 1.46899 * 111.00273 * 200.73963 * 5 4 2 7 7 C 1.50702 * 109.46989 * 75.67287 * 6 5 4 8 8 H 1.07995 * 120.00094 * 5.04074 * 7 6 5 9 9 C 1.37879 * 119.99764 * 185.04271 * 7 6 5 10 10 N 1.31507 * 119.99632 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 120.00018 * 359.97438 * 9 7 6 12 12 H 1.48495 * 109.47184 * 90.00254 * 11 9 7 13 13 H 1.48500 * 109.47169 * 210.00393 * 11 9 7 14 14 H 1.48500 * 109.47110 * 330.00109 * 11 9 7 15 15 C 1.46909 * 110.99759 * 76.78348 * 5 4 2 16 16 C 1.52999 * 109.46926 * 195.98821 * 15 5 4 17 17 N 1.46904 * 109.46952 * 180.02562 * 16 15 5 18 18 C 1.47015 * 110.99703 * 293.63219 * 17 16 15 19 19 C 1.53094 * 109.25390 * 177.60535 * 18 17 16 20 20 O 1.43023 * 109.25854 * 56.85507 * 19 18 17 21 21 C 1.43015 * 113.73340 * 301.32194 * 20 19 18 22 22 C 1.47016 * 111.00158 * 169.99914 * 17 16 15 23 23 C 1.50700 * 109.47035 * 119.99869 * 2 1 3 24 24 O 1.20824 * 119.99820 * 95.00252 * 23 2 1 25 25 O 1.34221 * 120.00045 * 275.00232 * 23 2 1 26 26 H 1.08998 * 109.47673 * 294.82938 * 1 2 3 27 27 H 1.09008 * 109.47104 * 54.82654 * 1 2 3 28 28 H 1.08998 * 109.47083 * 174.82333 * 1 2 3 29 29 H 0.96699 * 114.00159 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.47023 * 174.09044 * 4 2 1 31 31 H 1.08998 * 109.46977 * 294.08738 * 4 2 1 32 32 H 1.09008 * 109.46681 * 195.67031 * 6 5 4 33 33 H 1.08994 * 109.47226 * 315.67116 * 6 5 4 34 34 H 0.97006 * 119.99632 * 180.02562 * 10 9 7 35 35 H 1.09000 * 109.47125 * 315.98909 * 15 5 4 36 36 H 1.09000 * 109.46659 * 75.98783 * 15 5 4 37 37 H 1.09009 * 109.47075 * 299.99943 * 16 15 5 38 38 H 1.08995 * 109.47541 * 60.00008 * 16 15 5 39 39 H 1.08989 * 109.50664 * 297.54287 * 18 17 16 40 40 H 1.09002 * 109.50206 * 57.67791 * 18 17 16 41 41 H 1.09001 * 109.51150 * 296.91429 * 19 18 17 42 42 H 1.08999 * 109.54075 * 176.80387 * 19 18 17 43 43 H 1.09000 * 109.50692 * 298.73836 * 21 20 19 44 44 H 1.09000 * 109.54293 * 178.62494 * 21 20 19 45 45 H 1.09005 * 109.50546 * 302.32819 * 22 17 16 46 46 H 1.09000 * 109.50760 * 62.41013 * 22 17 16 47 47 H 0.96708 * 117.00077 * 179.97438 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.4374 -0.1160 -2.4444 6 6 1.4902 -1.0395 -3.5857 7 6 0.4414 -2.1083 -3.4159 8 1 -0.2533 -2.0569 -2.5906 9 6 0.3688 -3.1518 -4.3142 10 7 -0.5467 -4.0841 -4.1663 11 14 1.5700 -3.2402 -5.7420 12 1 2.7736 -4.0060 -5.3296 13 1 0.9218 -3.9188 -6.8929 14 1 1.9695 -1.8661 -6.1387 15 6 2.0847 1.1618 -2.7707 16 6 1.2033 1.9456 -3.7452 17 7 1.8507 3.2231 -4.0720 18 6 1.9181 4.0967 -2.8915 19 6 2.6513 5.3889 -3.2609 20 8 1.9816 6.0138 -4.3593 21 6 1.8985 5.1912 -5.5261 22 6 1.1577 3.8969 -5.1798 23 6 2.0323 -0.7104 1.2305 24 8 2.3197 -1.8827 1.1762 25 8 2.1604 -0.0408 2.3867 26 1 -0.3634 0.4315 0.9326 27 1 -0.3634 0.5920 -0.8401 28 1 -0.3633 -1.0235 -0.0927 29 1 2.9703 1.4236 0.0004 30 1 3.1249 -0.6304 -1.3037 31 1 1.7657 -1.7748 -1.1979 32 1 1.3020 -0.4889 -4.5075 33 1 2.4759 -1.5020 -3.6335 34 1 -0.5975 -4.8185 -4.7981 35 1 2.2232 1.7423 -1.8586 36 1 3.0542 0.9709 -3.2307 37 1 1.0648 1.3651 -4.6574 38 1 0.2337 2.1365 -3.2853 39 1 0.9086 4.3341 -2.5563 40 1 2.4575 3.5879 -2.0925 41 1 3.6777 5.1567 -3.5448 42 1 2.6543 6.0638 -2.4049 43 1 2.9030 4.9531 -5.8760 44 1 1.3567 5.7222 -6.3088 45 1 1.1419 3.2422 -6.0511 46 1 0.1357 4.1304 -4.8814 47 1 2.4861 -0.5391 3.1488 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833526754.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:14:48 Heat of formation + Delta-G solvation = -189.113839 kcal Electronic energy + Delta-G solvation = -28571.871110 eV Core-core repulsion = 24561.327446 eV Total energy + Delta-G solvation = -4010.543664 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.188 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.76917 -40.53788 -39.41125 -37.49405 -37.22225 -36.39852 -34.56259 -32.82920 -32.11954 -30.94276 -29.56897 -27.59941 -26.19720 -25.25962 -24.85072 -23.50288 -21.85883 -21.27831 -21.13284 -19.50665 -18.96977 -18.52984 -17.59623 -17.13231 -17.09249 -16.95966 -16.37137 -16.17883 -16.05228 -15.91558 -15.57854 -15.47132 -15.18781 -14.85205 -14.60013 -14.38259 -14.11237 -13.62404 -13.46023 -13.37156 -13.24145 -13.07827 -12.91216 -12.71543 -12.63212 -12.57220 -12.44291 -12.32037 -12.19316 -11.91595 -11.81842 -11.58997 -11.43407 -11.38798 -10.79475 -10.66759 -10.58122 -9.38069 -9.05351 -8.25964 -6.27545 0.99739 1.33355 1.34510 1.44683 1.82655 2.34289 2.66315 2.97532 3.02439 3.07970 3.40930 3.62532 3.82839 3.93987 4.02382 4.08460 4.19345 4.23724 4.29130 4.39898 4.43199 4.53879 4.62658 4.67596 4.73759 4.79854 4.81736 4.85036 4.87420 4.90030 4.97806 4.99320 5.02982 5.11970 5.17844 5.31104 5.48816 5.58408 5.89349 6.01261 6.06389 6.22161 6.30159 6.51083 6.64883 6.80064 6.93250 7.35575 8.90645 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.008362 B = 0.005464 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3347.861465 B = 5123.168738 C = 7961.601931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.171 3.829 3 O -0.526 6.526 4 C 0.052 3.948 5 N -0.523 5.523 6 C 0.172 3.828 7 C -0.507 4.507 8 H 0.042 0.958 9 C 0.010 3.990 10 N -0.947 5.947 11 Si 0.939 3.061 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.249 1.249 15 C 0.047 3.953 16 C 0.072 3.928 17 N -0.540 5.540 18 C 0.017 3.983 19 C 0.064 3.936 20 O -0.405 6.405 21 C 0.068 3.932 22 C 0.015 3.985 23 C 0.464 3.536 24 O -0.540 6.540 25 O -0.494 6.494 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.055 0.945 29 H 0.392 0.608 30 H 0.046 0.954 31 H 0.069 0.931 32 H 0.033 0.967 33 H -0.015 1.015 34 H 0.265 0.735 35 H 0.117 0.883 36 H 0.028 0.972 37 H 0.056 0.944 38 H 0.031 0.969 39 H 0.032 0.968 40 H 0.100 0.900 41 H 0.063 0.937 42 H 0.116 0.884 43 H 0.063 0.937 44 H 0.114 0.886 45 H 0.086 0.914 46 H 0.034 0.966 47 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.045 18.757 6.084 21.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.128 3.872 3 O -0.334 6.334 4 C -0.078 4.078 5 N -0.247 5.247 6 C 0.045 3.955 7 C -0.545 4.545 8 H 0.061 0.939 9 C -0.188 4.188 10 N -0.588 5.588 11 Si 0.763 3.237 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.172 1.172 15 C -0.080 4.080 16 C -0.056 4.056 17 N -0.266 5.266 18 C -0.111 4.111 19 C -0.012 4.012 20 O -0.324 6.324 21 C -0.009 4.009 22 C -0.113 4.113 23 C 0.306 3.694 24 O -0.430 6.430 25 O -0.307 6.307 26 H 0.096 0.904 27 H 0.103 0.897 28 H 0.074 0.926 29 H 0.243 0.757 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.051 0.949 33 H 0.002 0.998 34 H 0.074 0.926 35 H 0.134 0.866 36 H 0.046 0.954 37 H 0.075 0.925 38 H 0.049 0.951 39 H 0.050 0.950 40 H 0.118 0.882 41 H 0.082 0.918 42 H 0.134 0.866 43 H 0.081 0.919 44 H 0.132 0.868 45 H 0.105 0.895 46 H 0.052 0.948 47 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 8.199 18.833 5.620 21.295 hybrid contribution 0.874 -1.881 -0.177 2.082 sum 9.073 16.952 5.443 19.983 Atomic orbital electron populations 1.21515 0.89451 1.02770 1.03901 1.20825 0.97294 0.82249 0.86799 1.86595 1.28333 1.22860 1.95638 1.22350 0.96376 0.99160 0.89866 1.61544 1.55268 1.04037 1.03846 1.19999 0.93902 0.91177 0.90379 1.21258 1.15284 1.06456 1.11536 0.93930 1.25763 0.97298 0.95100 1.00597 1.70044 1.36451 1.13584 1.38732 0.85845 0.79184 0.79502 0.79194 1.19806 1.20885 1.17244 1.22478 0.94483 0.90434 1.00642 1.21880 0.95502 0.89607 0.98633 1.62196 1.52681 1.03895 1.07791 1.22881 1.00271 0.94547 0.93370 1.22806 0.95357 0.93178 0.89872 1.87942 1.79122 1.42022 1.23307 1.22726 1.00570 0.89734 0.87826 1.22833 0.96168 0.97049 0.95282 1.24520 0.73282 0.85533 0.86066 1.90767 1.47080 1.19124 1.85985 1.84564 1.78575 1.47021 1.20576 0.90399 0.89721 0.92621 0.75707 0.93577 0.91286 0.94892 0.99764 0.92640 0.86562 0.95417 0.92509 0.95099 0.94960 0.88155 0.91830 0.86620 0.91885 0.86799 0.89536 0.94779 0.71236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.70 8.50 71.98 0.61 -3.09 16 2 C 0.17 4.90 1.12 -11.54 -0.01 4.89 16 3 O -0.53 -11.58 9.98 -135.70 -1.35 -12.93 16 4 C 0.05 1.83 3.78 86.30 0.33 2.15 16 5 N -0.52 -19.73 3.39 -900.78 -3.06 -22.79 16 6 C 0.17 7.93 3.63 85.56 0.31 8.24 16 7 C -0.51 -28.59 9.06 25.60 0.23 -28.36 16 8 H 0.04 2.68 8.06 -2.91 -0.02 2.65 16 9 C 0.01 0.56 5.47 84.66 0.46 1.02 16 10 N -0.95 -59.13 13.96 21.45 0.30 -58.83 16 11 Si 0.94 44.04 27.37 68.60 1.88 45.92 16 12 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 13 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 14 H -0.25 -10.81 6.69 99.48 0.67 -10.14 16 15 C 0.05 1.41 4.69 86.30 0.40 1.82 16 16 C 0.07 2.18 5.02 86.30 0.43 2.61 16 17 N -0.54 -13.47 4.73 -895.21 -4.23 -17.70 16 18 C 0.02 0.36 5.44 86.31 0.47 0.83 16 19 C 0.06 1.15 7.01 72.01 0.50 1.66 16 20 O -0.41 -8.82 10.83 -148.98 -1.61 -10.43 16 21 C 0.07 1.29 7.01 72.01 0.50 1.80 16 22 C 0.02 0.34 5.64 86.31 0.49 0.83 16 23 C 0.46 12.79 7.17 71.24 0.51 13.30 16 24 O -0.54 -19.11 16.73 21.97 0.37 -18.74 16 25 O -0.49 -9.49 13.18 -46.39 -0.61 -10.10 16 26 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.08 2.83 7.64 -2.38 -0.02 2.81 16 28 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.39 5.66 8.83 -74.06 -0.65 5.00 16 30 H 0.05 1.46 7.98 -2.39 -0.02 1.44 16 31 H 0.07 3.07 6.79 -2.39 -0.02 3.05 16 32 H 0.03 1.52 5.66 -2.38 -0.01 1.50 16 33 H -0.02 -0.71 7.15 -2.39 -0.02 -0.73 16 34 H 0.26 15.50 8.31 -92.70 -0.77 14.73 16 35 H 0.12 2.91 3.20 -2.39 -0.01 2.90 16 36 H 0.03 0.85 8.05 -2.39 -0.02 0.83 16 37 H 0.06 1.95 6.44 -2.38 -0.02 1.93 16 38 H 0.03 1.01 8.12 -2.39 -0.02 0.99 16 39 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.10 1.88 6.38 -2.39 -0.02 1.86 16 41 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.09 1.92 8.09 -2.38 -0.02 1.90 16 46 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.43 4.33 9.10 -74.05 -0.67 3.66 16 Total: -1.00 -73.31 369.52 -3.45 -76.76 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: -0.38 Total: 21.16 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: 5.25 Total: 7.70 kcal Atomic # 7 Polarization: -92.34 SS G_CDS: -6.99 Total: -99.33 kcal Atomic # 8 Polarization: -49.00 SS G_CDS: -3.21 Total: -52.21 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.88 Total: 45.92 kcal Total: -73.31 -3.45 -76.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833526754.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.352 kcal (2) G-P(sol) polarization free energy of solvation -73.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds