Wall clock time and date at job start Fri Apr 10 2020 18:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47344 * 2 1 4 4 C 1.53003 * 109.47261 * 240.00171 * 2 1 3 5 5 O 1.45205 * 109.47247 * 119.99934 * 2 1 3 6 6 C 1.34642 * 116.99839 * 59.99842 * 5 2 1 7 7 O 1.21513 * 119.99674 * 0.02562 * 6 5 2 8 8 N 1.34774 * 119.99909 * 179.97438 * 6 5 2 9 9 C 1.46499 * 119.99858 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.46913 * 180.02562 * 9 8 6 11 11 C 1.53002 * 109.67957 * 299.47981 * 10 9 8 12 12 O 1.42901 * 109.47130 * 300.52191 * 11 10 9 13 13 C 1.53303 * 109.67932 * 178.92919 * 10 9 8 14 14 O 1.42965 * 109.22104 * 292.57603 * 13 10 9 15 15 C 1.42964 * 114.16388 * 297.41875 * 14 13 10 16 16 C 1.52877 * 109.29867 * 62.45283 * 15 14 13 17 17 N 1.47146 * 109.68572 * 60.00106 * 10 9 8 18 18 C 1.36928 * 120.98469 * 249.16536 * 17 10 9 19 19 H 1.08007 * 119.99862 * 334.14807 * 18 17 10 20 20 C 1.38813 * 120.00369 * 154.14278 * 18 17 10 21 21 N 1.31620 * 120.00248 * 334.58859 * 20 18 17 22 22 Si 1.86801 * 120.00144 * 154.58451 * 20 18 17 23 23 H 1.48503 * 109.47359 * 180.02562 * 22 20 18 24 24 H 1.48506 * 109.47166 * 300.00555 * 22 20 18 25 25 H 1.48501 * 109.47055 * 60.00222 * 22 20 18 26 26 H 1.08995 * 109.46702 * 300.00151 * 1 2 3 27 27 H 1.08995 * 109.46741 * 59.99998 * 1 2 3 28 28 H 1.08999 * 109.46763 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47238 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47377 * 299.99869 * 3 2 1 31 31 H 1.09000 * 109.46970 * 59.99948 * 3 2 1 32 32 H 1.09004 * 109.46682 * 299.99887 * 4 2 1 33 33 H 1.08994 * 109.47134 * 59.99732 * 4 2 1 34 34 H 1.09001 * 109.47377 * 180.02562 * 4 2 1 35 35 H 0.97000 * 120.00148 * 0.02562 * 8 6 5 36 36 H 1.08994 * 109.47077 * 60.00493 * 9 8 6 37 37 H 1.09003 * 109.47162 * 300.00270 * 9 8 6 38 38 H 1.09001 * 109.46918 * 60.52142 * 11 10 9 39 39 H 1.09002 * 109.47073 * 180.51864 * 11 10 9 40 40 H 0.96698 * 113.99850 * 179.97438 * 12 11 10 41 41 H 1.09001 * 109.51421 * 52.50349 * 13 10 9 42 42 H 1.09002 * 109.51050 * 172.65620 * 13 10 9 43 43 H 1.08999 * 109.50504 * 182.50550 * 15 14 13 44 44 H 1.08995 * 109.51660 * 302.60792 * 15 14 13 45 45 H 1.09000 * 109.61852 * 188.10915 * 16 15 14 46 46 H 1.09001 * 109.52562 * 67.69540 * 16 15 14 47 47 H 0.97005 * 119.99574 * 354.10172 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9724 1.3384 7 8 0.9516 -2.5097 0.5036 8 7 2.0681 -2.6657 2.4167 9 6 1.6739 -4.0669 2.5832 10 6 2.2741 -4.6148 3.8794 11 6 3.8006 -4.5325 3.8156 12 8 4.2727 -5.2954 2.7033 13 6 1.8427 -6.0732 4.0720 14 8 0.4347 -6.1192 4.3156 15 6 0.0249 -5.4468 5.5089 16 6 0.3646 -3.9607 5.3933 17 7 1.7830 -3.8306 5.0235 18 6 2.6221 -3.0083 5.7268 19 1 3.6825 -3.2121 5.7511 20 6 2.1101 -1.9128 6.4083 21 7 0.9819 -1.3611 6.0145 22 14 3.0223 -1.2215 7.8847 23 1 2.2726 -0.0619 8.4312 24 1 3.1408 -2.2705 8.9291 25 1 4.3783 -0.7828 7.4677 26 1 -0.3632 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 -1.7489 -1.2492 33 1 1.6767 -0.2074 -2.1392 34 1 3.1300 -0.7216 -1.2491 35 1 2.6277 -2.2369 3.0828 36 1 2.0396 -4.6500 1.7381 37 1 0.5870 -4.1356 2.6289 38 1 4.1037 -3.4921 3.6974 39 1 4.2249 -4.9321 4.7367 40 1 5.2342 -5.2879 2.6010 41 1 2.0754 -6.6436 3.1728 42 1 2.3735 -6.5006 4.9228 43 1 -1.0501 -5.5665 5.6432 44 1 0.5485 -5.8724 6.3648 45 1 0.1881 -3.4694 6.3502 46 1 -0.2586 -3.5032 4.6249 47 1 0.5525 -1.6642 5.1991 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886292284.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:15:13 Heat of formation + Delta-G solvation = -149.846609 kcal Electronic energy + Delta-G solvation = -29690.447453 eV Core-core repulsion = 25681.606545 eV Total energy + Delta-G solvation = -4008.840909 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.188 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.32084 -39.30460 -36.98144 -36.41488 -35.01866 -34.05767 -33.55106 -31.71534 -30.49645 -27.44523 -27.27522 -27.20894 -25.86670 -25.44874 -23.24128 -21.91142 -21.44627 -19.62465 -18.88308 -17.82990 -17.27236 -17.05828 -16.21202 -15.77070 -15.58506 -15.21046 -14.91186 -14.60794 -14.42682 -14.10895 -13.98028 -13.74874 -13.66617 -13.50115 -12.98324 -12.73176 -12.38284 -12.34431 -12.18692 -11.90287 -11.78337 -11.71968 -11.64046 -11.21789 -11.10801 -11.02945 -10.85109 -10.59442 -10.47707 -10.18871 -10.06272 -10.03297 -9.67912 -9.59286 -9.50836 -9.07130 -8.55381 -8.40186 -7.10728 -6.22862 -3.43814 2.71515 3.38189 3.41561 3.42604 3.60040 4.22095 4.37853 4.55430 4.74172 4.89326 4.92837 5.07368 5.13412 5.23663 5.34883 5.43817 5.56001 5.59147 5.65107 5.78105 5.80269 5.82628 5.91141 5.96570 6.01586 6.02517 6.06089 6.09629 6.16746 6.21488 6.33124 6.42641 6.45269 6.49481 6.53926 6.70766 6.86988 6.96448 7.10772 7.69243 7.75872 7.89420 8.13119 8.35568 8.85147 8.98572 9.61730 10.04370 11.03575 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.011147 B = 0.005635 C = 0.004586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.301822 B = 4967.808219 C = 6103.861289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.181 4.181 5 O -0.365 6.365 6 C 0.647 3.353 7 O -0.585 6.585 8 N -0.684 5.684 9 C 0.141 3.859 10 C 0.159 3.841 11 C 0.091 3.909 12 O -0.577 6.577 13 C 0.069 3.931 14 O -0.389 6.389 15 C 0.041 3.959 16 C 0.121 3.879 17 N -0.586 5.586 18 C -0.368 4.368 19 H 0.062 0.938 20 C -0.013 4.013 21 N -0.902 5.902 22 Si 1.062 2.938 23 H -0.285 1.285 24 H -0.293 1.293 25 H -0.292 1.292 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.414 0.586 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.052 0.948 40 H 0.375 0.625 41 H 0.093 0.907 42 H 0.050 0.950 43 H 0.083 0.917 44 H 0.045 0.955 45 H 0.089 0.911 46 H 0.028 0.972 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.822 -1.064 -7.666 8.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.238 4.238 5 O -0.279 6.279 6 C 0.400 3.600 7 O -0.477 6.477 8 N -0.342 5.342 9 C 0.015 3.985 10 C 0.070 3.930 11 C 0.013 3.987 12 O -0.381 6.381 13 C -0.010 4.010 14 O -0.308 6.308 15 C -0.036 4.036 16 C -0.005 4.005 17 N -0.312 5.312 18 C -0.496 4.496 19 H 0.080 0.920 20 C -0.217 4.217 21 N -0.540 5.540 22 Si 0.891 3.109 23 H -0.211 1.211 24 H -0.220 1.220 25 H -0.219 1.219 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.107 0.893 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.251 0.749 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.220 0.780 41 H 0.111 0.889 42 H 0.068 0.932 43 H 0.101 0.899 44 H 0.064 0.936 45 H 0.107 0.893 46 H 0.046 0.954 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.644 -0.299 -7.056 7.541 hybrid contribution 1.072 -0.552 -0.620 1.356 sum 3.716 -0.851 -7.677 8.571 Atomic orbital electron populations 1.22496 0.94283 1.05087 1.02068 1.21935 0.94282 0.91411 0.82469 1.21838 1.02040 0.92972 1.02854 1.22501 1.01270 1.03635 0.96407 1.86338 1.71616 1.24178 1.45808 1.18105 0.79036 0.80175 0.82655 1.90823 1.42127 1.70581 1.44144 1.44647 1.54415 1.12564 1.22623 1.21692 0.99933 0.78790 0.98046 1.20679 0.91789 0.92786 0.87748 1.22168 0.93979 0.94945 0.87562 1.86396 1.26508 1.74229 1.51016 1.22802 0.81975 0.95478 1.00700 1.87845 1.23031 1.75969 1.43943 1.23100 0.98992 0.94810 0.86748 1.21545 0.85181 0.92984 1.00765 1.44117 1.06616 1.50522 1.29903 1.19882 0.91805 1.07022 1.30912 0.91990 1.25813 0.99282 0.93096 1.03531 1.70780 1.19878 1.38873 1.24507 0.83570 0.74959 0.76140 0.76188 1.21070 1.22031 1.21941 0.92134 0.91674 0.89341 0.91684 0.90560 0.91397 0.89315 0.91626 0.92470 0.74901 0.91701 0.91829 0.92551 0.93027 0.77953 0.88938 0.93163 0.89889 0.93630 0.89309 0.95428 0.91539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.75 8.37 37.16 0.31 -2.43 16 2 C 0.14 2.08 1.13 -90.62 -0.10 1.98 16 3 C -0.14 -1.69 8.85 37.16 0.33 -1.36 16 4 C -0.18 -2.52 8.37 37.16 0.31 -2.21 16 5 O -0.36 -6.94 9.94 -40.33 -0.40 -7.34 16 6 C 0.65 13.34 8.06 54.05 0.44 13.78 16 7 O -0.59 -12.60 11.88 -19.28 -0.23 -12.83 16 8 N -0.68 -14.09 5.15 -65.28 -0.34 -14.42 16 9 C 0.14 2.84 4.36 -4.04 -0.02 2.82 16 10 C 0.16 3.09 0.52 -131.31 -0.07 3.02 16 11 C 0.09 1.58 4.48 37.16 0.17 1.75 16 12 O -0.58 -8.61 12.52 -35.23 -0.44 -9.05 16 13 C 0.07 1.26 5.42 37.31 0.20 1.46 16 14 O -0.39 -7.56 10.37 -35.23 -0.37 -7.93 16 15 C 0.04 0.78 6.97 37.09 0.26 1.04 16 16 C 0.12 2.66 4.47 -3.75 -0.02 2.64 16 17 N -0.59 -12.92 2.36 -157.32 -0.37 -13.29 16 18 C -0.37 -8.84 8.05 -15.06 -0.12 -8.96 16 19 H 0.06 1.47 6.23 -52.48 -0.33 1.14 16 20 C -0.01 -0.32 4.70 -17.43 -0.08 -0.41 16 21 N -0.90 -24.74 12.43 55.49 0.69 -24.05 16 22 Si 1.06 23.24 29.99 -169.99 -5.10 18.14 16 23 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.26 7.11 56.52 0.40 -5.85 16 25 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.09 1.56 5.88 -51.93 -0.31 1.26 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.09 1.46 5.88 -51.93 -0.31 1.16 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.41 8.96 6.75 -40.82 -0.28 8.68 16 36 H 0.06 1.31 7.67 -51.93 -0.40 0.91 16 37 H 0.06 1.42 7.24 -51.93 -0.38 1.04 16 38 H 0.06 1.04 6.28 -51.93 -0.33 0.71 16 39 H 0.05 0.89 7.64 -51.93 -0.40 0.50 16 40 H 0.37 3.81 9.12 45.56 0.42 4.23 16 41 H 0.09 1.57 7.97 -51.93 -0.41 1.15 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 44 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.09 2.14 6.42 -51.93 -0.33 1.81 16 46 H 0.03 0.66 7.31 -51.93 -0.38 0.28 16 47 H 0.27 7.67 6.63 -40.82 -0.27 7.40 16 LS Contribution 362.13 15.07 5.46 5.46 Total: -1.00 -29.01 362.13 -6.20 -35.22 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: -6.71 Total: 16.99 kcal Atomic # 6 Polarization: 11.50 SS G_CDS: 1.61 Total: 13.11 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: -0.02 Total: -51.76 kcal Atomic # 8 Polarization: -35.71 SS G_CDS: -1.44 Total: -37.15 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -5.10 Total: 18.14 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.01 -6.20 -35.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886292284.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.630 kcal (2) G-P(sol) polarization free energy of solvation -29.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds