Wall clock time and date at job start Fri Apr 10 2020 18:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47344 * 2 1 4 4 C 1.53003 * 109.47261 * 240.00171 * 2 1 3 5 5 O 1.45205 * 109.47247 * 119.99934 * 2 1 3 6 6 C 1.34642 * 116.99839 * 59.99842 * 5 2 1 7 7 O 1.21513 * 119.99674 * 0.02562 * 6 5 2 8 8 N 1.34774 * 119.99909 * 179.97438 * 6 5 2 9 9 C 1.46499 * 119.99858 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.46913 * 180.02562 * 9 8 6 11 11 C 1.53002 * 109.67957 * 299.47981 * 10 9 8 12 12 O 1.42901 * 109.47130 * 300.52191 * 11 10 9 13 13 C 1.53303 * 109.67932 * 178.92919 * 10 9 8 14 14 O 1.42965 * 109.22104 * 292.57603 * 13 10 9 15 15 C 1.42964 * 114.16388 * 297.41875 * 14 13 10 16 16 C 1.52877 * 109.29867 * 62.45283 * 15 14 13 17 17 N 1.47146 * 109.68572 * 60.00106 * 10 9 8 18 18 C 1.36928 * 120.98469 * 249.16536 * 17 10 9 19 19 H 1.08007 * 119.99862 * 334.14807 * 18 17 10 20 20 C 1.38813 * 120.00369 * 154.14278 * 18 17 10 21 21 N 1.31620 * 120.00248 * 334.58859 * 20 18 17 22 22 Si 1.86801 * 120.00144 * 154.58451 * 20 18 17 23 23 H 1.48503 * 109.47359 * 180.02562 * 22 20 18 24 24 H 1.48506 * 109.47166 * 300.00555 * 22 20 18 25 25 H 1.48501 * 109.47055 * 60.00222 * 22 20 18 26 26 H 1.08995 * 109.46702 * 300.00151 * 1 2 3 27 27 H 1.08995 * 109.46741 * 59.99998 * 1 2 3 28 28 H 1.08999 * 109.46763 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47238 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47377 * 299.99869 * 3 2 1 31 31 H 1.09000 * 109.46970 * 59.99948 * 3 2 1 32 32 H 1.09004 * 109.46682 * 299.99887 * 4 2 1 33 33 H 1.08994 * 109.47134 * 59.99732 * 4 2 1 34 34 H 1.09001 * 109.47377 * 180.02562 * 4 2 1 35 35 H 0.97000 * 120.00148 * 0.02562 * 8 6 5 36 36 H 1.08994 * 109.47077 * 60.00493 * 9 8 6 37 37 H 1.09003 * 109.47162 * 300.00270 * 9 8 6 38 38 H 1.09001 * 109.46918 * 60.52142 * 11 10 9 39 39 H 1.09002 * 109.47073 * 180.51864 * 11 10 9 40 40 H 0.96698 * 113.99850 * 179.97438 * 12 11 10 41 41 H 1.09001 * 109.51421 * 52.50349 * 13 10 9 42 42 H 1.09002 * 109.51050 * 172.65620 * 13 10 9 43 43 H 1.08999 * 109.50504 * 182.50550 * 15 14 13 44 44 H 1.08995 * 109.51660 * 302.60792 * 15 14 13 45 45 H 1.09000 * 109.61852 * 188.10915 * 16 15 14 46 46 H 1.09001 * 109.52562 * 67.69540 * 16 15 14 47 47 H 0.97005 * 119.99574 * 354.10172 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9724 1.3384 7 8 0.9516 -2.5097 0.5036 8 7 2.0681 -2.6657 2.4167 9 6 1.6739 -4.0669 2.5832 10 6 2.2741 -4.6148 3.8794 11 6 3.8006 -4.5325 3.8156 12 8 4.2727 -5.2954 2.7033 13 6 1.8427 -6.0732 4.0720 14 8 0.4347 -6.1192 4.3156 15 6 0.0249 -5.4468 5.5089 16 6 0.3646 -3.9607 5.3933 17 7 1.7830 -3.8306 5.0235 18 6 2.6221 -3.0083 5.7268 19 1 3.6825 -3.2121 5.7511 20 6 2.1101 -1.9128 6.4083 21 7 0.9819 -1.3611 6.0145 22 14 3.0223 -1.2215 7.8847 23 1 2.2726 -0.0619 8.4312 24 1 3.1408 -2.2705 8.9291 25 1 4.3783 -0.7828 7.4677 26 1 -0.3632 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 -1.7489 -1.2492 33 1 1.6767 -0.2074 -2.1392 34 1 3.1300 -0.7216 -1.2491 35 1 2.6277 -2.2369 3.0828 36 1 2.0396 -4.6500 1.7381 37 1 0.5870 -4.1356 2.6289 38 1 4.1037 -3.4921 3.6974 39 1 4.2249 -4.9321 4.7367 40 1 5.2342 -5.2879 2.6010 41 1 2.0754 -6.6436 3.1728 42 1 2.3735 -6.5006 4.9228 43 1 -1.0501 -5.5665 5.6432 44 1 0.5485 -5.8724 6.3648 45 1 0.1881 -3.4694 6.3502 46 1 -0.2586 -3.5032 4.6249 47 1 0.5525 -1.6642 5.1991 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886292284.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:15:12 Heat of formation + Delta-G solvation = -172.317484 kcal Electronic energy + Delta-G solvation = -29691.421864 eV Core-core repulsion = 25681.606545 eV Total energy + Delta-G solvation = -4009.815319 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.188 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.84810 -40.86281 -38.45469 -37.78276 -36.64963 -35.69861 -34.92806 -33.35625 -32.21763 -29.20910 -28.38678 -28.31396 -27.33412 -27.03314 -25.04204 -23.43321 -23.00553 -21.13096 -20.55138 -19.40205 -18.76454 -18.60643 -17.63102 -17.31624 -17.10938 -16.79486 -16.40289 -16.12351 -15.92872 -15.56705 -15.47589 -15.33990 -15.19565 -14.97720 -14.44635 -14.31047 -13.89621 -13.68931 -13.41994 -13.32109 -13.09329 -12.90912 -12.88035 -12.74605 -12.54828 -12.49770 -12.32216 -12.15370 -12.13963 -11.92871 -11.79262 -11.39545 -11.17533 -11.11280 -10.96064 -10.73840 -10.38600 -10.09145 -8.96795 -8.19021 -5.37847 1.25037 1.63155 1.68621 1.79191 1.86319 2.57245 2.90109 2.94774 3.27416 3.30844 3.66536 3.74684 3.78161 3.78901 3.89427 3.93580 4.12193 4.28913 4.38366 4.46928 4.48167 4.54417 4.58784 4.60439 4.64659 4.73085 4.74045 4.80053 4.81952 4.84721 4.91108 4.91930 5.01129 5.05566 5.18049 5.25237 5.27126 5.37824 5.58866 5.85960 6.19520 6.37894 6.45953 6.89147 6.94749 7.36427 7.73366 8.17754 9.04787 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.011147 B = 0.005635 C = 0.004586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.301822 B = 4967.808219 C = 6103.861289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.119 3.881 3 C -0.134 4.134 4 C -0.173 4.173 5 O -0.377 6.377 6 C 0.644 3.356 7 O -0.598 6.598 8 N -0.686 5.686 9 C 0.152 3.848 10 C 0.154 3.846 11 C 0.106 3.894 12 O -0.578 6.578 13 C 0.072 3.928 14 O -0.397 6.397 15 C 0.051 3.949 16 C 0.128 3.872 17 N -0.593 5.593 18 C -0.353 4.353 19 H 0.071 0.929 20 C -0.062 4.062 21 N -0.936 5.936 22 Si 1.108 2.892 23 H -0.302 1.302 24 H -0.282 1.282 25 H -0.276 1.276 26 H 0.049 0.951 27 H 0.100 0.900 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.111 0.889 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.097 0.903 34 H 0.062 0.938 35 H 0.408 0.592 36 H 0.068 0.932 37 H 0.035 0.965 38 H 0.043 0.957 39 H 0.057 0.943 40 H 0.398 0.602 41 H 0.109 0.891 42 H 0.060 0.940 43 H 0.106 0.894 44 H 0.055 0.945 45 H 0.064 0.936 46 H 0.000 1.000 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.422 -1.370 -8.346 10.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.083 3.917 3 C -0.191 4.191 4 C -0.231 4.231 5 O -0.292 6.292 6 C 0.398 3.602 7 O -0.491 6.491 8 N -0.344 5.344 9 C 0.027 3.973 10 C 0.066 3.934 11 C 0.027 3.973 12 O -0.386 6.386 13 C -0.007 4.007 14 O -0.315 6.315 15 C -0.026 4.026 16 C 0.003 3.997 17 N -0.319 5.319 18 C -0.481 4.481 19 H 0.089 0.911 20 C -0.261 4.261 21 N -0.577 5.577 22 Si 0.934 3.066 23 H -0.229 1.229 24 H -0.208 1.208 25 H -0.202 1.202 26 H 0.068 0.932 27 H 0.118 0.882 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.129 0.871 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.116 0.884 34 H 0.081 0.919 35 H 0.244 0.756 36 H 0.086 0.914 37 H 0.054 0.946 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.248 0.752 41 H 0.127 0.873 42 H 0.078 0.922 43 H 0.124 0.876 44 H 0.073 0.927 45 H 0.082 0.918 46 H 0.018 0.982 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.285 -0.634 -7.763 8.890 hybrid contribution 0.584 -0.462 -0.540 0.920 sum 4.869 -1.096 -8.303 9.688 Atomic orbital electron populations 1.22452 0.94451 1.03344 1.03254 1.22491 0.94472 0.92993 0.81780 1.21879 1.02451 0.90591 1.04153 1.22427 1.01584 1.02053 0.96995 1.86350 1.71746 1.23224 1.47857 1.18226 0.78813 0.80772 0.82423 1.90817 1.42594 1.71110 1.44547 1.44677 1.54376 1.12762 1.22568 1.21543 0.98180 0.78852 0.98728 1.20877 0.93414 0.93058 0.86098 1.21840 0.92261 0.94578 0.88583 1.86348 1.28910 1.73472 1.49878 1.22876 0.81427 0.94506 1.01866 1.87845 1.23869 1.75667 1.44130 1.23026 1.00561 0.92130 0.86921 1.21357 0.85027 0.94926 0.98434 1.44249 1.06376 1.50397 1.30866 1.20127 0.92364 1.06219 1.29416 0.91130 1.26888 0.99552 0.93949 1.05693 1.70894 1.21647 1.40584 1.24530 0.82932 0.74495 0.75205 0.73976 1.22925 1.20817 1.20161 0.93235 0.88165 0.92436 0.91075 0.87100 0.92216 0.92252 0.88390 0.91864 0.75585 0.91407 0.94617 0.93878 0.92499 0.75216 0.87308 0.92167 0.87640 0.92716 0.91768 0.98244 0.93412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.31 8.37 71.98 0.60 -4.70 16 2 C 0.12 3.52 1.13 -10.79 -0.01 3.51 16 3 C -0.13 -2.95 8.85 71.98 0.64 -2.31 16 4 C -0.17 -4.59 8.37 71.98 0.60 -3.98 16 5 O -0.38 -14.55 9.94 -55.52 -0.55 -15.10 16 6 C 0.64 27.30 8.06 129.79 1.05 28.35 16 7 O -0.60 -26.56 11.88 19.80 0.24 -26.33 16 8 N -0.69 -29.01 5.15 -590.86 -3.04 -32.05 16 9 C 0.15 6.23 4.36 86.38 0.38 6.61 16 10 C 0.15 5.88 0.52 3.58 0.00 5.89 16 11 C 0.11 3.49 4.48 71.98 0.32 3.81 16 12 O -0.58 -15.85 12.52 -148.98 -1.86 -17.72 16 13 C 0.07 2.49 5.42 72.08 0.39 2.88 16 14 O -0.40 -14.95 10.37 -148.98 -1.54 -16.50 16 15 C 0.05 1.90 6.97 71.94 0.50 2.40 16 16 C 0.13 5.79 4.47 86.21 0.39 6.17 16 17 N -0.59 -26.29 2.36 -651.64 -1.54 -27.83 16 18 C -0.35 -16.86 8.05 84.04 0.68 -16.18 16 19 H 0.07 3.24 6.23 -2.91 -0.02 3.22 16 20 C -0.06 -3.20 4.70 84.86 0.40 -2.80 16 21 N -0.94 -53.02 12.43 21.65 0.27 -52.75 16 22 Si 1.11 46.95 29.99 68.60 2.06 49.01 16 23 H -0.30 -13.62 7.11 99.48 0.71 -12.92 16 24 H -0.28 -11.32 7.11 99.48 0.71 -10.61 16 25 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 26 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.06 2.08 5.88 -2.39 -0.01 2.07 16 29 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.06 1.94 5.88 -2.38 -0.01 1.93 16 33 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.41 18.11 6.75 -92.71 -0.63 17.48 16 36 H 0.07 2.72 7.67 -2.39 -0.02 2.71 16 37 H 0.04 1.65 7.24 -2.39 -0.02 1.63 16 38 H 0.04 1.54 6.28 -2.39 -0.01 1.53 16 39 H 0.06 1.83 7.64 -2.39 -0.02 1.81 16 40 H 0.40 6.91 9.12 -74.06 -0.68 6.24 16 41 H 0.11 3.44 7.97 -2.39 -0.02 3.42 16 42 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 44 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.06 3.21 6.42 -2.39 -0.02 3.19 16 46 H 0.00 -0.02 7.31 -2.39 -0.02 -0.04 16 47 H 0.26 15.07 6.63 -92.70 -0.61 14.46 16 Total: -1.00 -64.45 362.13 -0.21 -64.65 By element: Atomic # 1 Polarization: 45.12 SS G_CDS: -0.16 Total: 44.96 kcal Atomic # 6 Polarization: 23.71 SS G_CDS: 5.93 Total: 29.64 kcal Atomic # 7 Polarization: -108.32 SS G_CDS: -4.31 Total: -112.63 kcal Atomic # 8 Polarization: -71.92 SS G_CDS: -3.73 Total: -75.64 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.06 Total: 49.01 kcal Total: -64.45 -0.21 -64.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886292284.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.663 kcal (2) G-P(sol) polarization free energy of solvation -64.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds