Wall clock time and date at job start Fri Apr 10 2020 18:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46903 * 110.99772 * 2 1 4 4 C 1.50697 * 109.47204 * 66.04657 * 3 2 1 5 5 H 1.07993 * 119.99848 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99715 * 179.72123 * 4 3 2 7 7 N 1.31508 * 119.99967 * 0.28199 * 6 4 3 8 8 Si 1.86801 * 119.99790 * 180.27526 * 6 4 3 9 9 H 1.48507 * 109.47003 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46808 * 120.00112 * 8 6 4 11 11 H 1.48492 * 109.47401 * 240.00390 * 8 6 4 12 12 C 1.46906 * 110.99888 * 236.04985 * 2 1 3 13 13 C 1.52997 * 109.46567 * 293.95005 * 12 2 1 14 14 H 1.09007 * 109.47361 * 60.00108 * 13 12 2 15 15 O 1.42898 * 109.47548 * 299.99978 * 13 12 2 16 16 C 1.53000 * 109.46863 * 180.02562 * 13 12 2 17 17 N 1.46904 * 109.47303 * 185.00093 * 16 13 12 18 18 C 1.46895 * 110.99962 * 179.97438 * 17 16 13 19 19 H 1.09003 * 109.47417 * 33.39890 * 18 17 16 20 20 C 1.53001 * 109.47564 * 273.39420 * 18 17 16 21 21 O 1.42905 * 109.46839 * 295.00575 * 20 18 17 22 22 C 1.53009 * 109.46887 * 153.39470 * 18 17 16 23 23 C 1.52999 * 109.47020 * 292.57962 * 22 18 17 24 24 H 1.08995 * 110.33322 * 308.70465 * 23 22 18 25 25 C 1.54480 * 110.37083 * 186.44971 * 23 22 18 26 26 C 1.54503 * 104.06160 * 217.18972 * 25 23 22 27 27 C 1.54473 * 104.06389 * 0.02562 * 26 25 23 28 28 O 1.44422 * 110.37024 * 70.95205 * 23 22 18 29 29 H 1.08998 * 109.47592 * 60.00126 * 1 2 3 30 30 H 1.08999 * 109.47038 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47052 * 299.99698 * 1 2 3 32 32 H 1.09009 * 109.47076 * 306.04534 * 3 2 1 33 33 H 1.08997 * 109.47182 * 186.05205 * 3 2 1 34 34 H 0.96997 * 119.99726 * 179.97438 * 7 6 4 35 35 H 1.08999 * 109.47218 * 53.94675 * 12 2 1 36 36 H 1.08993 * 109.47010 * 173.95078 * 12 2 1 37 37 H 0.96705 * 113.99774 * 300.00569 * 15 13 12 38 38 H 1.09000 * 109.47238 * 304.99790 * 16 13 12 39 39 H 1.08998 * 109.47372 * 64.99622 * 16 13 12 40 40 H 1.00902 * 110.99511 * 303.95137 * 17 16 13 41 41 H 1.09001 * 109.46780 * 54.99733 * 20 18 17 42 42 H 1.08996 * 109.47215 * 175.00356 * 20 18 17 43 43 H 0.96698 * 113.99772 * 179.97438 * 21 20 18 44 44 H 1.08997 * 109.46981 * 52.57870 * 22 18 17 45 45 H 1.09006 * 109.46807 * 172.58227 * 22 18 17 46 46 H 1.09000 * 110.51021 * 335.84075 * 25 23 22 47 47 H 1.09002 * 110.50745 * 98.40835 * 25 23 22 48 48 H 1.09007 * 110.50912 * 118.65150 * 26 25 23 49 49 H 1.09005 * 110.51146 * 241.35174 * 26 25 23 50 50 H 1.09005 * 110.37339 * 142.80847 * 27 26 25 51 51 H 1.08999 * 110.37104 * 265.03167 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0747 1.5113 2.0487 6 6 2.0321 3.3475 1.5310 7 7 2.7172 3.9999 0.6174 8 14 1.5944 4.1825 3.1436 9 1 0.8260 3.2402 3.9963 10 1 2.8391 4.5836 3.8471 11 1 0.7704 5.3871 2.8696 12 6 1.9954 -0.7659 -1.1377 13 6 1.6315 -2.2425 -0.9704 14 1 0.5471 -2.3475 -0.9323 15 8 2.2009 -2.7391 0.2425 16 6 2.1803 -3.0404 -2.1549 17 7 1.7298 -4.4352 -2.0566 18 6 2.2384 -5.2331 -3.1803 19 1 3.2221 -4.8648 -3.4716 20 6 1.2780 -5.1150 -4.3655 21 8 0.0222 -5.7038 -4.0215 22 6 2.3477 -6.6992 -2.7565 23 6 3.4427 -6.8438 -1.6978 24 1 4.3659 -6.3773 -2.0417 25 6 3.6824 -8.3347 -1.3722 26 6 3.9573 -8.3475 0.1481 27 6 3.8506 -6.8628 0.5613 28 8 3.0164 -6.2550 -0.4499 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.5610 1.9274 -0.8310 33 1 3.0796 1.3445 -0.1083 34 1 2.9949 4.9147 0.7809 35 1 1.5610 -0.3872 -2.0629 36 1 3.0796 -0.6610 -1.1757 37 1 3.1653 -2.6770 0.2785 38 1 1.8160 -2.6058 -3.0857 39 1 3.2697 -3.0085 -2.1410 40 1 2.0000 -4.8410 -1.1731 41 1 1.1311 -4.0632 -4.6107 42 1 1.6986 -5.6337 -5.2270 43 1 -0.6372 -5.6646 -4.7276 44 1 1.3954 -7.0294 -2.3416 45 1 2.5977 -7.3104 -3.6238 46 1 2.7954 -8.9239 -1.6050 47 1 4.5451 -8.7117 -1.9216 48 1 3.2062 -8.9430 0.6671 49 1 4.9573 -8.7302 0.3522 50 1 3.3842 -6.7746 1.5426 51 1 4.8369 -6.3989 0.5678 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905458645.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:15:42 Heat of formation + Delta-G solvation = -173.829853 kcal Electronic energy + Delta-G solvation = -27868.539272 eV Core-core repulsion = 23994.491466 eV Total energy + Delta-G solvation = -3874.047806 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 316.220 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.64445 -39.57991 -38.40438 -37.14270 -35.87979 -34.62196 -33.37811 -32.71624 -30.88510 -29.57598 -28.78928 -27.14941 -26.43610 -25.03433 -23.13113 -22.46889 -21.90214 -21.84708 -21.19779 -18.58609 -18.34105 -17.77163 -17.20920 -17.12762 -16.77615 -16.66141 -16.41133 -16.22596 -15.91682 -15.56828 -15.17352 -15.06699 -14.60386 -14.56183 -14.46329 -14.04806 -13.76485 -13.66560 -13.29127 -13.20138 -12.99346 -12.78773 -12.62457 -12.60101 -12.52862 -12.47490 -12.35779 -12.22676 -12.01415 -11.98724 -11.60769 -11.47728 -11.38944 -11.26268 -10.77179 -10.69994 -10.63838 -10.63042 -9.18720 -8.96652 -8.21494 -6.31212 1.40271 1.40834 1.55255 2.40012 2.81071 3.06333 3.11261 3.45150 3.60602 3.62339 3.72581 3.77198 3.97381 4.06738 4.09728 4.15780 4.20150 4.25976 4.33374 4.42187 4.50349 4.52283 4.56186 4.57429 4.67623 4.71343 4.74636 4.76384 4.78468 4.86355 4.92843 4.95054 4.99881 5.05427 5.11992 5.15205 5.16724 5.20549 5.30173 5.33772 5.64772 5.94817 6.03950 6.24853 6.32111 6.62579 6.82353 6.85002 6.96638 7.06221 7.38493 8.89886 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017440 B = 0.002626 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.096923 B =10659.379374 C =11737.185422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.539 5.539 3 C 0.207 3.793 4 C -0.522 4.522 5 H 0.060 0.940 6 C 0.001 3.999 7 N -0.935 5.935 8 Si 0.970 3.030 9 H -0.265 1.265 10 H -0.276 1.276 11 H -0.277 1.277 12 C 0.027 3.973 13 C 0.130 3.870 14 H 0.088 0.912 15 O -0.556 6.556 16 C 0.040 3.960 17 N -0.686 5.686 18 C 0.082 3.918 19 H 0.060 0.940 20 C 0.087 3.913 21 O -0.577 6.577 22 C -0.103 4.103 23 C 0.063 3.937 24 H 0.069 0.931 25 C -0.145 4.145 26 C -0.151 4.151 27 C 0.039 3.961 28 O -0.392 6.392 29 H 0.010 0.990 30 H 0.072 0.928 31 H 0.055 0.945 32 H -0.039 1.039 33 H 0.005 0.995 34 H 0.265 0.735 35 H 0.032 0.968 36 H 0.068 0.932 37 H 0.375 0.625 38 H 0.076 0.924 39 H 0.035 0.965 40 H 0.362 0.638 41 H 0.037 0.963 42 H 0.066 0.934 43 H 0.387 0.613 44 H 0.067 0.933 45 H 0.101 0.899 46 H 0.076 0.924 47 H 0.092 0.908 48 H 0.074 0.926 49 H 0.091 0.909 50 H 0.089 0.911 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.928 -27.337 -10.513 29.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.262 5.262 3 C 0.081 3.919 4 C -0.561 4.561 5 H 0.078 0.922 6 C -0.197 4.197 7 N -0.576 5.576 8 Si 0.795 3.205 9 H -0.190 1.190 10 H -0.202 1.202 11 H -0.202 1.202 12 C -0.102 4.102 13 C 0.070 3.930 14 H 0.106 0.894 15 O -0.361 6.361 16 C -0.090 4.090 17 N -0.326 5.326 18 C -0.028 4.028 19 H 0.078 0.922 20 C 0.008 3.992 21 O -0.384 6.384 22 C -0.141 4.141 23 C 0.006 3.994 24 H 0.087 0.913 25 C -0.183 4.183 26 C -0.189 4.189 27 C -0.038 4.038 28 O -0.312 6.312 29 H 0.028 0.972 30 H 0.091 0.909 31 H 0.074 0.926 32 H -0.021 1.021 33 H 0.023 0.977 34 H 0.074 0.926 35 H 0.050 0.950 36 H 0.086 0.914 37 H 0.223 0.777 38 H 0.095 0.905 39 H 0.053 0.947 40 H 0.188 0.812 41 H 0.056 0.944 42 H 0.084 0.916 43 H 0.235 0.765 44 H 0.086 0.914 45 H 0.120 0.880 46 H 0.095 0.905 47 H 0.111 0.889 48 H 0.093 0.907 49 H 0.110 0.890 50 H 0.107 0.893 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.088 -27.369 -9.649 29.095 hybrid contribution 1.021 1.506 -0.611 1.919 sum 3.109 -25.863 -10.260 27.997 Atomic orbital electron populations 1.22192 0.87961 1.00637 0.99770 1.61933 1.07883 1.14887 1.41541 1.19413 0.93645 0.83848 0.94972 1.21492 1.34666 0.97617 1.02296 0.92201 1.25917 0.94977 0.97983 1.00804 1.70084 1.39389 1.11971 1.36124 0.85320 0.78141 0.78139 0.78937 1.18953 1.20190 1.20248 1.22793 1.00140 0.95209 0.92069 1.21738 0.98235 0.89062 0.83971 0.89396 1.86579 1.25663 1.84858 1.39028 1.22518 0.97333 0.90541 0.98648 1.60568 1.63701 1.01112 1.07188 1.21737 0.95447 0.93801 0.91843 0.92243 1.22236 0.84737 0.96561 0.95623 1.86549 1.24341 1.82258 1.45258 1.21721 0.98640 0.95618 0.98116 1.23261 0.97006 0.93485 0.85647 0.91329 1.22957 1.03314 0.95697 0.96322 1.22923 1.03498 0.96581 0.95887 1.23540 0.95062 0.92516 0.92650 1.88989 1.59743 1.65413 1.17049 0.97158 0.90927 0.92606 1.02140 0.97727 0.92643 0.95022 0.91376 0.77742 0.90519 0.94676 0.81158 0.94434 0.91559 0.76472 0.91441 0.88026 0.90545 0.88896 0.90677 0.89048 0.89277 0.91850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.81 9.16 127.69 1.17 2.98 16 2 N -0.54 -24.80 4.62 -927.03 -4.28 -29.08 16 3 C 0.21 11.54 4.72 85.56 0.40 11.94 16 4 C -0.52 -30.86 8.51 25.60 0.22 -30.64 16 5 H 0.06 3.52 7.10 -2.91 -0.02 3.50 16 6 C 0.00 0.06 5.46 84.66 0.46 0.52 16 7 N -0.93 -57.37 13.29 21.45 0.28 -57.09 16 8 Si 0.97 45.57 29.54 68.60 2.03 47.60 16 9 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 12 C 0.03 1.00 4.62 86.30 0.40 1.40 16 13 C 0.13 4.12 3.08 30.59 0.09 4.21 16 14 H 0.09 3.05 6.47 -2.38 -0.02 3.03 16 15 O -0.56 -18.78 12.72 -148.98 -1.90 -20.67 16 16 C 0.04 1.03 5.15 86.30 0.44 1.47 16 17 N -0.69 -17.56 6.26 -491.55 -3.08 -20.64 16 18 C 0.08 1.58 2.42 44.92 0.11 1.69 16 19 H 0.06 1.05 7.74 -2.39 -0.02 1.03 16 20 C 0.09 1.47 6.81 71.98 0.49 1.96 16 21 O -0.58 -11.19 12.88 -148.98 -1.92 -13.11 16 22 C -0.10 -1.75 4.19 30.60 0.13 -1.62 16 23 C 0.06 1.03 3.22 31.10 0.10 1.13 16 24 H 0.07 1.04 8.11 -2.39 -0.02 1.02 16 25 C -0.15 -1.74 6.63 31.61 0.21 -1.53 16 26 C -0.15 -1.84 7.09 31.61 0.22 -1.62 16 27 C 0.04 0.65 7.63 72.48 0.55 1.20 16 28 O -0.39 -8.66 8.48 -148.98 -1.26 -9.92 16 29 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.07 2.71 6.30 -2.39 -0.02 2.70 16 31 H 0.06 2.52 6.86 -2.38 -0.02 2.51 16 32 H -0.04 -2.34 8.12 -2.38 -0.02 -2.36 16 33 H 0.00 0.27 7.93 -2.39 -0.02 0.26 16 34 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 35 H 0.03 1.15 8.12 -2.39 -0.02 1.13 16 36 H 0.07 2.48 7.93 -2.39 -0.02 2.46 16 37 H 0.38 10.67 9.04 -74.05 -0.67 10.00 16 38 H 0.08 1.88 7.47 -2.39 -0.02 1.86 16 39 H 0.04 0.84 8.05 -2.39 -0.02 0.82 16 40 H 0.36 10.15 4.72 -89.69 -0.42 9.73 16 41 H 0.04 0.68 7.47 -2.39 -0.02 0.66 16 42 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.39 4.12 9.12 -74.06 -0.68 3.45 16 44 H 0.07 1.50 7.81 -2.39 -0.02 1.48 16 45 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 46 H 0.08 0.93 7.87 -2.39 -0.02 0.91 16 47 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 49 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 50 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 51 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -73.20 397.52 -5.97 -79.17 By element: Atomic # 1 Polarization: 31.49 SS G_CDS: -0.85 Total: 30.64 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: 5.01 Total: -6.90 kcal Atomic # 7 Polarization: -99.73 SS G_CDS: -7.08 Total: -106.81 kcal Atomic # 8 Polarization: -38.63 SS G_CDS: -5.08 Total: -43.70 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -73.20 -5.97 -79.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905458645.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.662 kcal (2) G-P(sol) polarization free energy of solvation -73.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds