Wall clock time and date at job start Fri Apr 10 2020 18:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47369 * 2 1 4 4 N 1.46503 * 109.47039 * 240.00396 * 2 1 3 5 5 C 1.34777 * 120.00058 * 84.99589 * 4 2 1 6 6 O 1.21481 * 119.99654 * 0.27643 * 5 4 2 7 7 C 1.48453 * 120.00103 * 179.97438 * 5 4 2 8 8 C 1.39531 * 120.54835 * 179.72139 * 7 5 4 9 9 C 1.38768 * 118.26396 * 179.80332 * 8 7 5 10 10 N 1.32204 * 119.14219 * 0.47741 * 9 8 7 11 11 C 1.31877 * 121.04083 * 359.74129 * 10 9 8 12 12 C 1.50700 * 119.04341 * 180.02562 * 11 10 9 13 13 C 1.52992 * 117.49977 * 8.76933 * 12 11 10 14 14 C 1.52992 * 117.49660 * 300.10618 * 12 11 10 15 15 N 1.31586 * 121.91455 * 0.02562 * 11 10 9 16 16 C 1.52996 * 109.47649 * 120.00456 * 2 1 3 17 17 C 1.53946 * 113.74213 * 281.83869 * 16 2 1 18 18 N 1.47575 * 86.11795 * 222.04442 * 17 16 2 19 19 C 1.36940 * 134.49444 * 204.63803 * 18 17 16 20 20 H 1.07993 * 120.00300 * 180.02562 * 19 18 17 21 21 C 1.38822 * 119.99608 * 0.02562 * 19 18 17 22 22 N 1.31616 * 120.00230 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99766 * 180.02562 * 21 19 18 24 24 H 1.48509 * 109.47083 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47117 * 119.99641 * 23 21 19 26 26 H 1.48504 * 109.47019 * 239.99893 * 23 21 19 27 27 C 1.47578 * 91.01352 * 24.63911 * 18 17 16 28 28 H 1.09003 * 109.46810 * 295.53801 * 1 2 3 29 29 H 1.08996 * 109.47020 * 55.54315 * 1 2 3 30 30 H 1.08997 * 109.46616 * 175.54483 * 1 2 3 31 31 H 0.97002 * 120.00229 * 264.99921 * 4 2 1 32 32 H 1.08001 * 120.87070 * 0.02562 * 8 7 5 33 33 H 1.07994 * 120.42640 * 180.19643 * 9 8 7 34 34 H 1.09001 * 115.54686 * 154.44244 * 12 11 10 35 35 H 1.09006 * 117.49771 * 359.97438 * 13 12 11 36 36 H 1.08996 * 117.50363 * 145.02445 * 13 12 11 37 37 H 1.09006 * 117.49998 * 214.98052 * 14 12 11 38 38 H 1.09002 * 117.50261 * 359.97438 * 14 12 11 39 39 H 1.08998 * 112.94250 * 53.56734 * 16 2 1 40 40 H 1.09009 * 113.76754 * 336.34808 * 17 16 2 41 41 H 1.09000 * 113.76994 * 107.74008 * 17 16 2 42 42 H 0.96996 * 120.00350 * 180.02562 * 22 21 19 43 43 H 1.09001 * 113.76501 * 221.05621 * 27 18 17 44 44 H 1.09004 * 113.76892 * 89.66584 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1470 -0.0181 -2.3572 6 8 1.8628 1.1618 -2.4104 7 6 2.6423 -0.7177 -3.5692 8 6 2.7744 -0.0342 -4.7785 9 6 3.2458 -0.7334 -5.8805 10 7 3.5423 -2.0152 -5.7510 11 6 3.4014 -2.6323 -4.5941 12 6 3.7534 -4.0944 -4.4971 13 6 4.4505 -4.7344 -5.6992 14 6 2.9873 -5.0665 -5.3964 15 7 2.9624 -2.0085 -3.5219 16 6 2.0401 -0.7213 1.2491 17 6 1.9742 0.1326 2.5283 18 7 3.3072 -0.4166 2.8434 19 6 4.0159 -0.6127 3.9987 20 1 5.0043 -1.0460 3.9590 21 6 3.4637 -0.2543 5.2209 22 7 2.2593 0.2743 5.2693 23 14 4.4306 -0.5211 6.7967 24 1 5.7480 -1.1251 6.4729 25 1 4.6370 0.7824 7.4774 26 1 3.6751 -1.4333 7.6926 27 6 3.5699 -0.6697 1.4134 28 1 -0.3633 0.4431 0.9273 29 1 -0.3633 0.5814 -0.8473 30 1 -0.3632 -1.0246 -0.0798 31 1 2.2491 -1.6317 -1.1528 32 1 2.5199 1.0127 -4.8539 33 1 3.3646 -0.2380 -6.8327 34 1 4.0381 -4.4446 -3.5049 35 1 4.6543 -4.0980 -6.5604 36 1 5.1937 -5.5060 -5.4981 37 1 2.7684 -6.0565 -4.9961 38 1 2.2283 -4.6487 -6.0579 39 1 1.6198 -1.7204 1.3643 40 1 1.9747 1.2064 2.3403 41 1 1.1952 -0.1782 3.2244 42 1 1.8736 0.5250 6.1232 43 1 4.0649 -1.6213 1.2194 44 1 4.0392 0.1682 0.8979 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970518407.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:02 Heat of formation + Delta-G solvation = 95.010055 kcal Electronic energy + Delta-G solvation = -25605.238026 eV Core-core repulsion = 21946.616570 eV Total energy + Delta-G solvation = -3658.621456 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.59313 -39.71499 -38.09918 -37.28681 -34.95749 -34.17093 -32.17766 -32.07016 -30.46770 -27.48243 -26.11549 -25.34054 -24.71973 -24.00197 -22.69797 -22.44713 -21.05399 -20.39896 -19.29060 -18.17458 -17.86873 -16.80124 -16.17495 -15.91511 -15.76090 -15.58983 -15.06493 -14.79348 -14.45898 -14.41448 -14.08792 -13.89776 -13.55438 -13.16685 -12.58137 -12.34105 -12.10034 -11.86985 -11.62550 -11.41582 -11.33501 -11.26635 -11.24127 -11.07740 -10.89378 -10.82731 -10.70614 -10.43994 -10.34369 -9.90027 -9.81372 -9.65897 -9.53005 -9.40854 -8.91963 -8.78832 -6.86521 -5.76151 -3.08078 0.22714 0.57042 2.59694 2.91017 3.29718 3.35412 3.39443 3.44689 3.47283 3.63354 3.84734 4.33215 4.45790 4.46851 4.52922 4.64731 4.66878 4.82010 5.09598 5.15390 5.17899 5.32038 5.34447 5.39605 5.50528 5.53782 5.63594 5.73839 5.80055 5.85058 5.93593 5.98944 6.05874 6.23954 6.36248 6.44832 6.47918 6.56454 6.62904 6.77854 7.23034 7.36907 7.47648 7.57296 7.70037 7.99340 8.12040 9.05964 9.71773 10.61082 11.41205 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.017263 B = 0.002737 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.568429 B =10227.508402 C =11193.154981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.147 3.853 3 H 0.090 0.910 4 N -0.691 5.691 5 C 0.566 3.434 6 O -0.528 6.528 7 C 0.142 3.858 8 C -0.180 4.180 9 C 0.153 3.847 10 N -0.507 5.507 11 C 0.349 3.651 12 C -0.104 4.104 13 C -0.153 4.153 14 C -0.155 4.155 15 N -0.489 5.489 16 C -0.147 4.147 17 C 0.176 3.824 18 N -0.612 5.612 19 C -0.222 4.222 20 H 0.080 0.920 21 C -0.009 4.009 22 N -0.921 5.921 23 Si 0.911 3.089 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.125 3.875 28 H 0.074 0.926 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.410 0.590 32 H 0.161 0.839 33 H 0.177 0.823 34 H 0.133 0.867 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.028 0.972 41 H 0.076 0.924 42 H 0.253 0.747 43 H 0.042 0.958 44 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.949 -6.988 -24.338 25.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.043 3.957 3 H 0.108 0.892 4 N -0.341 5.341 5 C 0.349 3.651 6 O -0.404 6.404 7 C -0.006 4.006 8 C -0.203 4.203 9 C -0.014 4.014 10 N -0.221 5.221 11 C 0.082 3.918 12 C -0.124 4.124 13 C -0.190 4.190 14 C -0.193 4.193 15 N -0.205 5.205 16 C -0.167 4.167 17 C 0.050 3.950 18 N -0.338 5.338 19 C -0.350 4.350 20 H 0.098 0.902 21 C -0.205 4.205 22 N -0.569 5.569 23 Si 0.742 3.258 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.217 1.217 27 C -0.001 4.001 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.246 0.754 32 H 0.179 0.821 33 H 0.194 0.806 34 H 0.151 0.849 35 H 0.128 0.872 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.114 0.886 39 H 0.109 0.891 40 H 0.046 0.954 41 H 0.094 0.906 42 H 0.063 0.937 43 H 0.060 0.940 44 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -0.882 -7.053 -23.856 24.892 hybrid contribution 0.447 0.581 0.864 1.133 sum -0.435 -6.471 -22.992 23.890 Atomic orbital electron populations 1.22117 0.95084 1.01891 1.02577 1.21260 0.94067 0.97547 0.82798 0.89171 1.46039 1.64283 1.14821 1.08914 1.17778 0.78634 0.86112 0.82604 1.90797 1.50485 1.14654 1.84418 1.21792 0.94161 0.89896 0.94771 1.22985 1.00141 1.03772 0.93373 1.23326 0.89977 0.89268 0.98862 1.68040 1.16413 1.10728 1.26933 1.22096 0.90393 0.95685 0.83583 1.20673 1.07560 0.85823 0.98343 1.23046 0.95148 1.02361 0.98479 1.23005 0.95620 0.99133 1.01530 1.68070 1.11431 1.08811 1.32192 1.23872 0.97665 1.00867 0.94307 1.22196 0.89725 0.93850 0.89201 1.45937 1.16295 1.71895 0.99649 1.19075 0.98364 1.34759 0.82766 0.90246 1.24783 0.97067 1.01178 0.97490 1.69812 1.15252 1.47504 1.24292 0.86052 0.78945 0.77342 0.83461 1.20489 1.21750 1.21694 1.22543 0.93069 0.97741 0.86789 0.90731 0.92766 0.92613 0.75385 0.82107 0.80581 0.84907 0.87224 0.88016 0.87737 0.88600 0.89135 0.95415 0.90613 0.93681 0.94011 0.95079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 9.46 37.16 0.35 -1.87 16 2 C 0.15 2.30 2.29 -67.93 -0.16 2.14 16 3 H 0.09 1.58 7.48 -51.93 -0.39 1.19 16 4 N -0.69 -9.69 4.94 -54.55 -0.27 -9.96 16 5 C 0.57 8.23 7.79 -12.05 -0.09 8.13 16 6 O -0.53 -8.94 16.09 5.38 0.09 -8.85 16 7 C 0.14 1.78 6.79 -82.64 -0.56 1.22 16 8 C -0.18 -1.81 9.72 -38.90 -0.38 -2.19 16 9 C 0.15 1.28 11.31 -17.20 -0.19 1.09 16 10 N -0.51 -5.13 9.33 -10.74 -0.10 -5.23 16 11 C 0.35 3.84 7.31 -157.30 -1.15 2.69 16 12 C -0.10 -0.90 6.23 -91.78 -0.57 -1.48 16 13 C -0.15 -1.05 10.01 -26.70 -0.27 -1.32 16 14 C -0.15 -1.07 10.24 -26.70 -0.27 -1.35 16 15 N -0.49 -5.98 9.60 -7.32 -0.07 -6.05 16 16 C -0.15 -2.66 3.36 -89.70 -0.30 -2.96 16 17 C 0.18 4.09 6.90 -2.98 -0.02 4.06 16 18 N -0.61 -15.83 3.70 -177.92 -0.66 -16.48 16 19 C -0.22 -6.31 10.70 -15.05 -0.16 -6.47 16 20 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 21 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 22 N -0.92 -27.38 11.38 55.49 0.63 -26.75 16 23 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 C 0.12 2.57 8.37 -2.98 -0.02 2.54 16 28 H 0.07 1.06 7.99 -51.93 -0.42 0.64 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.41 5.30 7.99 -40.82 -0.33 4.97 16 32 H 0.16 1.42 7.74 -52.49 -0.41 1.01 16 33 H 0.18 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.13 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.11 0.82 7.54 -51.93 -0.39 0.43 16 36 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 40 H 0.03 0.66 8.03 -51.92 -0.42 0.25 16 41 H 0.08 1.93 7.15 -51.93 -0.37 1.55 16 42 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.03 0.65 8.10 -51.93 -0.42 0.23 16 LS Contribution 373.24 15.07 5.62 5.62 Total: -1.00 -33.25 373.24 -10.16 -43.42 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -6.49 Total: 3.10 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: -3.90 Total: 3.91 kcal Atomic # 7 Polarization: -64.00 SS G_CDS: -0.47 Total: -64.47 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.09 Total: -8.85 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.25 -10.16 -43.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970518407.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.427 kcal (2) G-P(sol) polarization free energy of solvation -33.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds