Wall clock time and date at job start Fri Apr 10 2020 18:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47369 * 2 1 4 4 N 1.46503 * 109.47039 * 240.00396 * 2 1 3 5 5 C 1.34777 * 120.00058 * 84.99589 * 4 2 1 6 6 O 1.21481 * 119.99654 * 0.27643 * 5 4 2 7 7 C 1.48453 * 120.00103 * 179.97438 * 5 4 2 8 8 C 1.39531 * 120.54835 * 179.72139 * 7 5 4 9 9 C 1.38768 * 118.26396 * 179.80332 * 8 7 5 10 10 N 1.32204 * 119.14219 * 0.47741 * 9 8 7 11 11 C 1.31877 * 121.04083 * 359.74129 * 10 9 8 12 12 C 1.50700 * 119.04341 * 180.02562 * 11 10 9 13 13 C 1.52992 * 117.49977 * 8.76933 * 12 11 10 14 14 C 1.52992 * 117.49660 * 300.10618 * 12 11 10 15 15 N 1.31586 * 121.91455 * 0.02562 * 11 10 9 16 16 C 1.52996 * 109.47649 * 120.00456 * 2 1 3 17 17 C 1.53946 * 113.74213 * 281.83869 * 16 2 1 18 18 N 1.47575 * 86.11795 * 222.04442 * 17 16 2 19 19 C 1.36940 * 134.49444 * 204.63803 * 18 17 16 20 20 H 1.07993 * 120.00300 * 180.02562 * 19 18 17 21 21 C 1.38822 * 119.99608 * 0.02562 * 19 18 17 22 22 N 1.31616 * 120.00230 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99766 * 180.02562 * 21 19 18 24 24 H 1.48509 * 109.47083 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47117 * 119.99641 * 23 21 19 26 26 H 1.48504 * 109.47019 * 239.99893 * 23 21 19 27 27 C 1.47578 * 91.01352 * 24.63911 * 18 17 16 28 28 H 1.09003 * 109.46810 * 295.53801 * 1 2 3 29 29 H 1.08996 * 109.47020 * 55.54315 * 1 2 3 30 30 H 1.08997 * 109.46616 * 175.54483 * 1 2 3 31 31 H 0.97002 * 120.00229 * 264.99921 * 4 2 1 32 32 H 1.08001 * 120.87070 * 0.02562 * 8 7 5 33 33 H 1.07994 * 120.42640 * 180.19643 * 9 8 7 34 34 H 1.09001 * 115.54686 * 154.44244 * 12 11 10 35 35 H 1.09006 * 117.49771 * 359.97438 * 13 12 11 36 36 H 1.08996 * 117.50363 * 145.02445 * 13 12 11 37 37 H 1.09006 * 117.49998 * 214.98052 * 14 12 11 38 38 H 1.09002 * 117.50261 * 359.97438 * 14 12 11 39 39 H 1.08998 * 112.94250 * 53.56734 * 16 2 1 40 40 H 1.09009 * 113.76754 * 336.34808 * 17 16 2 41 41 H 1.09000 * 113.76994 * 107.74008 * 17 16 2 42 42 H 0.96996 * 120.00350 * 180.02562 * 22 21 19 43 43 H 1.09001 * 113.76501 * 221.05621 * 27 18 17 44 44 H 1.09004 * 113.76892 * 89.66584 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1470 -0.0181 -2.3572 6 8 1.8628 1.1618 -2.4104 7 6 2.6423 -0.7177 -3.5692 8 6 2.7744 -0.0342 -4.7785 9 6 3.2458 -0.7334 -5.8805 10 7 3.5423 -2.0152 -5.7510 11 6 3.4014 -2.6323 -4.5941 12 6 3.7534 -4.0944 -4.4971 13 6 4.4505 -4.7344 -5.6992 14 6 2.9873 -5.0665 -5.3964 15 7 2.9624 -2.0085 -3.5219 16 6 2.0401 -0.7213 1.2491 17 6 1.9742 0.1326 2.5283 18 7 3.3072 -0.4166 2.8434 19 6 4.0159 -0.6127 3.9987 20 1 5.0043 -1.0460 3.9590 21 6 3.4637 -0.2543 5.2209 22 7 2.2593 0.2743 5.2693 23 14 4.4306 -0.5211 6.7967 24 1 5.7480 -1.1251 6.4729 25 1 4.6370 0.7824 7.4774 26 1 3.6751 -1.4333 7.6926 27 6 3.5699 -0.6697 1.4134 28 1 -0.3633 0.4431 0.9273 29 1 -0.3633 0.5814 -0.8473 30 1 -0.3632 -1.0246 -0.0798 31 1 2.2491 -1.6317 -1.1528 32 1 2.5199 1.0127 -4.8539 33 1 3.3646 -0.2380 -6.8327 34 1 4.0381 -4.4446 -3.5049 35 1 4.6543 -4.0980 -6.5604 36 1 5.1937 -5.5060 -5.4981 37 1 2.7684 -6.0565 -4.9961 38 1 2.2283 -4.6487 -6.0579 39 1 1.6198 -1.7204 1.3643 40 1 1.9747 1.2064 2.3403 41 1 1.1952 -0.1782 3.2244 42 1 1.8736 0.5250 6.1232 43 1 4.0649 -1.6213 1.2194 44 1 4.0392 0.1682 0.8979 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970518407.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:01 Heat of formation + Delta-G solvation = 74.013105 kcal Electronic energy + Delta-G solvation = -25606.148522 eV Core-core repulsion = 21946.616570 eV Total energy + Delta-G solvation = -3659.531952 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.164 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.41485 -40.94638 -39.66930 -37.92071 -36.34127 -35.04532 -34.12503 -32.90034 -31.79880 -29.36189 -27.13738 -26.39668 -26.07593 -25.66007 -23.59078 -23.19473 -22.29720 -21.51902 -20.79033 -19.15490 -18.88539 -18.65824 -17.31667 -16.95759 -16.75192 -16.57574 -16.52450 -15.99224 -15.78598 -15.44867 -15.27672 -15.00369 -14.83099 -14.70146 -14.09599 -13.45350 -13.30607 -13.21592 -13.11568 -12.98350 -12.72532 -12.40788 -12.38581 -12.05756 -12.04102 -11.95625 -11.88517 -11.84241 -11.68156 -11.44688 -11.34542 -11.23174 -10.89085 -10.44218 -10.36125 -10.15394 -8.93814 -7.91966 -5.25647 -0.64411 -0.16286 1.44864 1.46050 1.56290 1.59163 1.83188 2.46090 2.52663 2.57932 2.90370 3.17010 3.28181 3.36433 3.44905 3.66836 3.74535 3.91754 3.93097 3.95409 4.13254 4.17802 4.22909 4.39371 4.51162 4.52961 4.60526 4.73542 4.79903 4.82585 4.83579 4.91394 4.99086 5.03098 5.14047 5.23113 5.23923 5.28023 5.34747 5.39066 5.52528 5.62064 5.73782 5.92985 6.37513 6.87055 6.91317 7.00663 7.59018 8.54720 9.25144 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.017263 B = 0.002737 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.568429 B =10227.508402 C =11193.154981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.159 3.841 3 H 0.070 0.930 4 N -0.685 5.685 5 C 0.567 3.433 6 O -0.557 6.557 7 C 0.120 3.880 8 C -0.178 4.178 9 C 0.164 3.836 10 N -0.511 5.511 11 C 0.338 3.662 12 C -0.125 4.125 13 C -0.142 4.142 14 C -0.146 4.146 15 N -0.504 5.504 16 C -0.110 4.110 17 C 0.173 3.827 18 N -0.643 5.643 19 C -0.237 4.237 20 H 0.082 0.918 21 C -0.067 4.067 22 N -0.952 5.952 23 Si 0.979 3.021 24 H -0.266 1.266 25 H -0.293 1.293 26 H -0.289 1.289 27 C 0.126 3.874 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.417 0.583 32 H 0.171 0.829 33 H 0.220 0.780 34 H 0.134 0.866 35 H 0.104 0.896 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.015 0.985 41 H 0.049 0.951 42 H 0.249 0.751 43 H 0.057 0.943 44 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.266 -8.369 -26.309 27.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.054 3.946 3 H 0.088 0.912 4 N -0.335 5.335 5 C 0.352 3.648 6 O -0.434 6.434 7 C -0.027 4.027 8 C -0.201 4.201 9 C -0.003 4.003 10 N -0.226 5.226 11 C 0.072 3.928 12 C -0.145 4.145 13 C -0.179 4.179 14 C -0.184 4.184 15 N -0.221 5.221 16 C -0.130 4.130 17 C 0.047 3.953 18 N -0.369 5.369 19 C -0.366 4.366 20 H 0.100 0.900 21 C -0.260 4.260 22 N -0.601 5.601 23 Si 0.808 3.192 24 H -0.190 1.190 25 H -0.220 1.220 26 H -0.216 1.216 27 C 0.001 3.999 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.255 0.745 32 H 0.189 0.811 33 H 0.236 0.764 34 H 0.151 0.849 35 H 0.122 0.878 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.108 0.892 39 H 0.122 0.878 40 H 0.033 0.967 41 H 0.067 0.933 42 H 0.058 0.942 43 H 0.076 0.924 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -0.184 -8.465 -25.858 27.209 hybrid contribution 0.270 1.019 1.360 1.720 sum 0.085 -7.446 -24.498 25.605 Atomic orbital electron populations 1.22050 0.93526 1.02966 1.02454 1.20936 0.95136 0.96111 0.82400 0.91186 1.45875 1.64269 1.15017 1.08381 1.18060 0.77867 0.85791 0.83111 1.90776 1.51775 1.15900 1.84992 1.21563 0.96002 0.90524 0.94648 1.23196 0.99692 1.04300 0.92940 1.24028 0.87866 0.88596 0.99840 1.68148 1.16448 1.11473 1.26482 1.22541 0.90118 0.96629 0.83552 1.20802 1.09427 0.85078 0.99154 1.23102 0.95565 1.02117 0.97150 1.23067 0.95533 0.99229 1.00542 1.68020 1.12278 1.08730 1.33060 1.23464 0.95943 1.00473 0.93124 1.22095 0.88222 0.93783 0.91184 1.46354 1.17313 1.72195 1.01056 1.19463 0.98699 1.34276 0.84136 0.90004 1.25641 0.98162 1.01514 1.00669 1.69995 1.16727 1.48732 1.24653 0.84998 0.78094 0.76907 0.79240 1.19028 1.22027 1.21557 1.22668 0.94921 0.98270 0.84031 0.91141 0.92564 0.90965 0.74544 0.81100 0.76377 0.84857 0.87775 0.86323 0.86111 0.89188 0.87767 0.96739 0.93284 0.94156 0.92434 0.95040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.14 9.46 71.98 0.68 -3.46 16 2 C 0.16 4.91 2.29 44.99 0.10 5.01 16 3 H 0.07 2.50 7.48 -2.39 -0.02 2.48 16 4 N -0.69 -18.74 4.94 -444.82 -2.20 -20.94 16 5 C 0.57 16.25 7.79 86.97 0.68 16.92 16 6 O -0.56 -18.82 16.09 -3.66 -0.06 -18.87 16 7 C 0.12 2.89 6.79 41.99 0.29 3.18 16 8 C -0.18 -3.29 9.72 22.71 0.22 -3.07 16 9 C 0.16 2.33 11.31 84.76 0.96 3.28 16 10 N -0.51 -9.28 9.33 -187.89 -1.75 -11.04 16 11 C 0.34 6.98 7.31 138.79 1.01 7.99 16 12 C -0.12 -1.98 6.23 -11.54 -0.07 -2.05 16 13 C -0.14 -1.66 10.01 30.62 0.31 -1.35 16 14 C -0.15 -1.73 10.24 30.62 0.31 -1.42 16 15 N -0.50 -11.85 9.60 -177.08 -1.70 -13.55 16 16 C -0.11 -3.96 3.36 -10.14 -0.03 -3.99 16 17 C 0.17 8.24 6.90 86.48 0.60 8.84 16 18 N -0.64 -33.67 3.70 -716.81 -2.65 -36.32 16 19 C -0.24 -13.61 10.70 84.04 0.90 -12.71 16 20 H 0.08 4.50 7.83 -2.91 -0.02 4.48 16 21 C -0.07 -3.86 5.50 84.87 0.47 -3.40 16 22 N -0.95 -57.95 11.38 21.65 0.25 -57.71 16 23 Si 0.98 46.27 29.55 68.60 2.03 48.30 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 25 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 26 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 27 C 0.13 5.15 8.37 86.48 0.72 5.87 16 28 H 0.07 1.98 7.99 -2.39 -0.02 1.96 16 29 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.42 10.32 7.99 -92.71 -0.74 9.58 16 32 H 0.17 2.74 7.74 -2.91 -0.02 2.72 16 33 H 0.22 1.07 8.06 -2.91 -0.02 1.05 16 34 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.10 1.35 7.54 -2.38 -0.02 1.33 16 36 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.12 1.02 8.14 -2.38 -0.02 1.01 16 38 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.10 3.51 8.14 -2.39 -0.02 3.49 16 40 H 0.01 0.73 8.03 -2.38 -0.02 0.71 16 41 H 0.05 2.58 7.15 -2.39 -0.02 2.57 16 42 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 43 H 0.06 2.17 8.14 -2.39 -0.02 2.16 16 44 H 0.03 1.31 8.10 -2.38 -0.02 1.29 16 Total: -1.00 -72.78 373.24 1.33 -71.45 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.27 Total: 19.04 kcal Atomic # 6 Polarization: 12.51 SS G_CDS: 7.14 Total: 19.65 kcal Atomic # 7 Polarization: -131.51 SS G_CDS: -8.05 Total: -139.56 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.06 Total: -18.87 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -72.78 1.33 -71.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970518407.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.460 kcal (2) G-P(sol) polarization free energy of solvation -72.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds