Wall clock time and date at job start Fri Apr 10 2020 18:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46708 * 2 1 4 4 N 1.46498 * 109.46950 * 119.99670 * 2 1 3 5 5 C 1.34783 * 120.00015 * 275.00350 * 4 2 1 6 6 O 1.21479 * 119.99973 * 359.97438 * 5 4 2 7 7 C 1.48460 * 119.99946 * 180.02562 * 5 4 2 8 8 C 1.39536 * 120.54837 * 179.97438 * 7 5 4 9 9 C 1.38760 * 118.26291 * 180.02562 * 8 7 5 10 10 N 1.32211 * 119.14431 * 359.72983 * 9 8 7 11 11 C 1.31876 * 121.03610 * 0.54436 * 10 9 8 12 12 C 1.50706 * 119.04029 * 179.71562 * 11 10 9 13 13 C 1.53000 * 117.49681 * 299.73343 * 12 11 10 14 14 C 1.53002 * 60.02940 * 107.47810 * 13 12 11 15 15 N 1.31577 * 121.91776 * 359.44051 * 11 10 9 16 16 C 1.52992 * 109.47600 * 239.99915 * 2 1 3 17 17 C 1.53940 * 113.74613 * 158.73963 * 16 2 1 18 18 N 1.47813 * 86.04020 * 222.08342 * 17 16 2 19 19 C 1.36935 * 134.45815 * 204.64457 * 18 17 16 20 20 H 1.07997 * 119.99943 * 179.86654 * 19 18 17 21 21 C 1.38811 * 120.00003 * 359.86699 * 19 18 17 22 22 N 1.31620 * 120.00122 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99823 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47399 * 60.00041 * 23 21 19 25 25 H 1.48511 * 109.46712 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47130 * 299.99316 * 23 21 19 27 27 C 1.47583 * 91.04952 * 24.54681 * 18 17 16 28 28 H 1.08998 * 109.47727 * 299.99963 * 1 2 3 29 29 H 1.09005 * 109.47087 * 60.00338 * 1 2 3 30 30 H 1.09006 * 109.47079 * 179.97438 * 1 2 3 31 31 H 0.96996 * 120.00339 * 94.99972 * 4 2 1 32 32 H 1.08003 * 120.86860 * 0.04105 * 8 7 5 33 33 H 1.08000 * 120.42751 * 180.02562 * 9 8 7 34 34 H 1.08999 * 115.54993 * 154.06536 * 12 11 10 35 35 H 1.09002 * 117.49833 * 214.97915 * 13 12 11 36 36 H 1.09002 * 117.49953 * 359.97438 * 13 12 11 37 37 H 1.09000 * 117.49996 * 107.50493 * 14 13 12 38 38 H 1.08999 * 117.49664 * 252.51862 * 14 13 12 39 39 H 1.09000 * 112.94474 * 290.33389 * 16 2 1 40 40 H 1.08997 * 113.76781 * 336.34840 * 17 16 2 41 41 H 1.09000 * 113.77072 * 107.74764 * 17 16 2 42 42 H 0.96995 * 120.00008 * 180.02562 * 22 21 19 43 43 H 1.08994 * 113.77111 * 221.15003 * 27 18 17 44 44 H 1.09004 * 113.86992 * 89.76801 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1469 -0.0181 2.3572 6 8 1.8584 1.1607 2.4116 7 6 2.6423 -0.7178 3.5693 8 6 2.7803 -0.0327 4.7770 9 6 3.2480 -0.7329 5.8799 10 7 3.5394 -2.0161 5.7517 11 6 3.4022 -2.6321 4.5938 12 6 3.7536 -4.0944 4.4969 13 6 5.1936 -4.4978 4.8205 14 6 4.0672 -4.8336 5.8001 15 7 2.9623 -2.0085 3.5219 16 6 2.0401 -0.7212 -1.2491 17 6 3.4848 -0.3520 -1.6316 18 7 2.9979 -0.3177 -3.0268 19 6 3.5876 -0.4758 -4.2525 20 1 2.9929 -0.4039 -5.1511 21 6 4.9497 -0.7284 -4.3400 22 7 5.6746 -0.8156 -3.2448 23 14 5.7542 -0.9434 -6.0121 24 1 5.5663 0.2920 -6.8143 25 1 7.2059 -1.2010 -5.8335 26 1 5.1304 -2.0916 -6.7176 27 6 1.6214 -0.0473 -2.5684 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 2.2489 -1.6317 1.1528 32 1 2.5295 1.0152 4.8515 33 1 3.3679 -0.2372 6.8319 34 1 3.2392 -4.6507 3.7133 35 1 5.6263 -5.3197 4.2501 36 1 5.8868 -3.7055 5.1031 37 1 3.7589 -5.8765 5.8742 38 1 4.0192 -4.2621 6.7269 39 1 1.8529 -1.7948 -1.2262 40 1 3.8047 0.6191 -1.2539 41 1 4.2071 -1.1447 -1.4365 42 1 6.6264 -0.9917 -3.3060 43 1 0.8587 -0.5970 -3.1199 44 1 1.3908 1.0132 -2.4662 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970518409.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:06 Heat of formation + Delta-G solvation = 73.963407 kcal Electronic energy + Delta-G solvation = -25696.776068 eV Core-core repulsion = 22037.241960 eV Total energy + Delta-G solvation = -3659.534107 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.41990 -40.93189 -39.67001 -37.93184 -36.33234 -35.05255 -34.14147 -32.90795 -31.73842 -29.37834 -27.16070 -26.38920 -26.08868 -25.59907 -23.63175 -23.20370 -22.31334 -21.54512 -20.73447 -19.13205 -18.87025 -18.65877 -17.35422 -16.96648 -16.82895 -16.65123 -16.50583 -15.85965 -15.72395 -15.62463 -15.18923 -14.98832 -14.78517 -14.65136 -14.11727 -13.46392 -13.28603 -13.23397 -13.10812 -12.91135 -12.70725 -12.58909 -12.39707 -12.08593 -12.04192 -11.96764 -11.88158 -11.76594 -11.64379 -11.45822 -11.36642 -11.22986 -10.86923 -10.43642 -10.38340 -10.13844 -8.93337 -7.90925 -5.25000 -0.65250 -0.16824 1.44271 1.48154 1.54214 1.57915 1.85526 2.46886 2.52298 2.56648 2.90167 3.15775 3.29211 3.34986 3.48196 3.66349 3.74066 3.89616 3.91551 3.94279 4.11927 4.16650 4.26310 4.42502 4.49946 4.55581 4.59973 4.72566 4.79790 4.81456 4.83726 4.97527 4.98609 5.04746 5.12384 5.22620 5.23886 5.30897 5.33713 5.37213 5.52373 5.62770 5.73553 5.92279 6.35796 6.85811 6.90259 6.99315 7.60217 8.55798 9.25741 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013232 B = 0.003118 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.628038 B = 8978.458183 C =10362.800472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.156 3.844 3 H 0.069 0.931 4 N -0.688 5.688 5 C 0.567 3.433 6 O -0.556 6.556 7 C 0.118 3.882 8 C -0.178 4.178 9 C 0.164 3.836 10 N -0.510 5.510 11 C 0.338 3.662 12 C -0.124 4.124 13 C -0.153 4.153 14 C -0.134 4.134 15 N -0.507 5.507 16 C -0.111 4.111 17 C 0.167 3.833 18 N -0.644 5.644 19 C -0.237 4.237 20 H 0.086 0.914 21 C -0.069 4.069 22 N -0.955 5.955 23 Si 0.980 3.020 24 H -0.278 1.278 25 H -0.295 1.295 26 H -0.273 1.273 27 C 0.133 3.867 28 H 0.053 0.947 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.415 0.585 32 H 0.173 0.827 33 H 0.221 0.779 34 H 0.134 0.866 35 H 0.118 0.882 36 H 0.086 0.914 37 H 0.122 0.878 38 H 0.106 0.894 39 H 0.102 0.898 40 H 0.004 0.996 41 H 0.039 0.961 42 H 0.247 0.753 43 H 0.067 0.933 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.022 -5.518 21.254 23.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.051 3.949 3 H 0.087 0.913 4 N -0.338 5.338 5 C 0.351 3.649 6 O -0.434 6.434 7 C -0.029 4.029 8 C -0.201 4.201 9 C -0.003 4.003 10 N -0.225 5.225 11 C 0.071 3.929 12 C -0.144 4.144 13 C -0.191 4.191 14 C -0.172 4.172 15 N -0.224 5.224 16 C -0.131 4.131 17 C 0.041 3.959 18 N -0.371 5.371 19 C -0.365 4.365 20 H 0.104 0.896 21 C -0.262 4.262 22 N -0.604 5.604 23 Si 0.808 3.192 24 H -0.205 1.205 25 H -0.221 1.221 26 H -0.198 1.198 27 C 0.008 3.992 28 H 0.072 0.928 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.252 0.748 32 H 0.190 0.810 33 H 0.238 0.762 34 H 0.152 0.848 35 H 0.136 0.864 36 H 0.105 0.895 37 H 0.140 0.860 38 H 0.124 0.876 39 H 0.120 0.880 40 H 0.022 0.978 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.085 0.915 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.802 -5.667 20.898 23.016 hybrid contribution 0.823 0.840 -1.105 1.614 sum -6.979 -4.827 19.793 21.536 Atomic orbital electron populations 1.22055 0.92715 1.03200 1.02741 1.21018 0.95528 0.96015 0.82307 0.91328 1.45935 1.64255 1.14991 1.08631 1.18056 0.77874 0.85801 0.83157 1.90758 1.51774 1.15796 1.85060 1.21606 0.96002 0.90546 0.94780 1.23203 0.99662 1.04297 0.92917 1.24052 0.87891 0.88526 0.99879 1.68150 1.16500 1.11501 1.26308 1.22539 0.90224 0.96635 0.83511 1.20818 1.02519 0.87113 1.03996 1.23053 0.89508 1.03455 1.03126 1.23102 1.00187 1.01280 0.92611 1.68018 1.12463 1.08997 1.32876 1.23452 0.96369 1.00501 0.92754 1.22168 0.93968 0.96395 0.83327 1.46405 1.05895 1.82902 1.01862 1.19438 0.91989 1.40694 0.84418 0.89601 1.25668 0.96788 1.02888 1.00873 1.70021 1.05819 1.56642 1.27939 0.85129 0.76854 0.78287 0.78923 1.20458 1.22142 1.19833 1.22676 0.87620 0.97685 0.91232 0.92790 0.90065 0.90946 0.74769 0.80955 0.76212 0.84771 0.86374 0.89549 0.86005 0.87602 0.88011 0.97792 0.94300 0.94381 0.91528 0.93491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.31 71.98 0.67 -3.00 16 2 C 0.16 4.82 2.38 44.99 0.11 4.93 16 3 H 0.07 2.45 7.41 -2.39 -0.02 2.44 16 4 N -0.69 -20.44 5.07 -444.83 -2.26 -22.69 16 5 C 0.57 17.48 7.79 86.97 0.68 18.15 16 6 O -0.56 -19.55 16.09 -3.65 -0.06 -19.61 16 7 C 0.12 3.14 6.79 42.00 0.29 3.42 16 8 C -0.18 -3.63 9.72 22.71 0.22 -3.41 16 9 C 0.16 2.62 11.31 84.76 0.96 3.58 16 10 N -0.51 -10.31 9.32 -187.89 -1.75 -12.06 16 11 C 0.34 7.84 7.31 138.79 1.01 8.85 16 12 C -0.12 -2.30 6.24 -11.51 -0.07 -2.37 16 13 C -0.15 -2.40 10.23 30.60 0.31 -2.08 16 14 C -0.13 -1.80 10.01 30.62 0.31 -1.50 16 15 N -0.51 -13.41 9.60 -177.07 -1.70 -15.11 16 16 C -0.11 -3.98 3.47 -10.14 -0.04 -4.02 16 17 C 0.17 8.18 7.08 86.44 0.61 8.79 16 18 N -0.64 -33.63 3.70 -716.09 -2.65 -36.28 16 19 C -0.24 -13.55 10.70 84.03 0.90 -12.65 16 20 H 0.09 4.63 7.83 -2.91 -0.02 4.61 16 21 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 22 N -0.96 -59.20 11.39 21.65 0.25 -58.95 16 23 Si 0.98 46.43 29.55 68.60 2.03 48.46 16 24 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 25 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 26 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 27 C 0.13 5.18 7.64 86.49 0.66 5.84 16 28 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.08 1.83 7.52 -2.38 -0.02 1.82 16 30 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.42 11.65 7.99 -92.71 -0.74 10.91 16 32 H 0.17 3.03 7.74 -2.91 -0.02 3.00 16 33 H 0.22 1.39 8.06 -2.91 -0.02 1.37 16 34 H 0.13 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.11 1.52 7.53 -2.39 -0.02 1.50 16 39 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 40 H 0.00 0.22 7.99 -2.39 -0.02 0.20 16 41 H 0.04 2.14 7.17 -2.39 -0.02 2.12 16 42 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 43 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 44 H 0.05 1.75 8.10 -2.38 -0.02 1.73 16 Total: -1.00 -74.58 372.30 1.22 -73.36 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: 0.28 Total: 21.93 kcal Atomic # 6 Polarization: 13.88 SS G_CDS: 7.09 Total: 20.97 kcal Atomic # 7 Polarization: -136.99 SS G_CDS: -8.11 Total: -145.11 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.06 Total: -19.61 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -74.58 1.22 -73.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970518409.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.324 kcal (2) G-P(sol) polarization free energy of solvation -74.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds