Wall clock time and date at job start Fri Apr 10 2020 18:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47246 * 2 1 4 4 N 1.46502 * 109.47030 * 239.99612 * 2 1 3 5 5 C 1.34776 * 119.99846 * 85.00115 * 4 2 1 6 6 O 1.21548 * 120.00266 * 0.02562 * 5 4 2 7 7 C 1.47830 * 119.99770 * 179.97438 * 5 4 2 8 8 C 1.39950 * 120.93989 * 359.72541 * 7 5 4 9 9 N 1.32150 * 118.92023 * 179.71341 * 8 7 5 10 10 C 1.31867 * 120.97235 * 0.56976 * 9 8 7 11 11 C 1.50693 * 118.95552 * 179.67640 * 10 9 8 12 12 C 1.52994 * 117.49833 * 8.65038 * 11 10 9 13 13 C 1.52995 * 117.50169 * 300.02439 * 11 10 9 14 14 N 1.31870 * 122.09186 * 359.70532 * 10 9 8 15 15 C 1.32153 * 120.96939 * 359.97438 * 14 10 9 16 16 C 1.53000 * 109.47006 * 119.99940 * 2 1 3 17 17 C 1.53948 * 113.74007 * 281.83396 * 16 2 1 18 18 N 1.47577 * 86.11934 * 222.04837 * 17 16 2 19 19 C 1.36933 * 134.49240 * 204.64652 * 18 17 16 20 20 H 1.08001 * 119.99656 * 179.97438 * 19 18 17 21 21 C 1.38809 * 120.00040 * 359.97438 * 19 18 17 22 22 N 1.31623 * 120.00308 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99868 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47464 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47226 * 120.00025 * 23 21 19 26 26 H 1.48505 * 109.47089 * 240.00263 * 23 21 19 27 27 C 1.47584 * 91.01223 * 24.64095 * 18 17 16 28 28 H 1.09003 * 109.46841 * 295.54660 * 1 2 3 29 29 H 1.09006 * 109.46928 * 55.54147 * 1 2 3 30 30 H 1.08993 * 109.47086 * 175.54271 * 1 2 3 31 31 H 0.97004 * 120.00019 * 264.99909 * 4 2 1 32 32 H 1.07997 * 120.53915 * 359.97371 * 8 7 5 33 33 H 1.09009 * 115.55031 * 154.34959 * 11 10 9 34 34 H 1.08996 * 117.50231 * 359.97438 * 12 11 10 35 35 H 1.09003 * 117.50314 * 145.01889 * 12 11 10 36 36 H 1.09003 * 117.50023 * 214.97849 * 13 11 10 37 37 H 1.09001 * 117.49826 * 0.02562 * 13 11 10 38 38 H 1.07999 * 120.53818 * 179.97438 * 15 14 10 39 39 H 1.09001 * 112.94751 * 53.56291 * 16 2 1 40 40 H 1.09000 * 113.76772 * 336.35479 * 17 16 2 41 41 H 1.09001 * 113.77056 * 107.74477 * 17 16 2 42 42 H 0.96994 * 119.99758 * 180.02562 * 22 21 19 43 43 H 1.09010 * 113.76639 * 221.05926 * 27 18 17 44 44 H 1.08990 * 113.76874 * 89.66267 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8585 1.1611 -2.4117 7 6 2.6404 -0.7152 -3.5640 8 6 2.9847 -2.0711 -3.5217 9 7 3.4159 -2.6556 -4.6257 10 6 3.5339 -1.9779 -5.7508 11 6 4.0372 -2.6881 -6.9809 12 6 4.1921 -4.2083 -6.9052 13 6 5.4324 -3.3124 -6.9151 14 7 3.2260 -0.6983 -5.8335 15 6 2.7812 -0.0364 -4.7797 16 6 2.0400 -0.7212 1.2493 17 6 1.9741 0.1329 2.5283 18 7 3.3071 -0.4164 2.8436 19 6 4.0155 -0.6124 3.9989 20 1 5.0036 -1.0465 3.9593 21 6 3.4637 -0.2530 5.2209 22 7 2.2593 0.2756 5.2692 23 14 4.4305 -0.5198 6.7968 24 1 5.7474 -1.1249 6.4733 25 1 4.6379 0.7839 7.4770 26 1 3.6744 -1.4310 7.6931 27 6 3.5698 -0.6697 1.4136 28 1 -0.3633 0.4432 0.9272 29 1 -0.3633 0.5815 -0.8474 30 1 -0.3633 -1.0245 -0.0799 31 1 2.2491 -1.6319 -1.1525 32 1 2.8955 -2.6315 -2.6029 33 1 3.7213 -2.2609 -7.9327 34 1 3.9305 -4.6947 -5.9655 35 1 3.9782 -4.7816 -7.8072 36 1 6.0344 -3.2963 -7.8237 37 1 5.9862 -3.2098 -5.9819 38 1 2.5315 1.0116 -4.8552 39 1 1.6196 -1.7203 1.3646 40 1 1.9746 1.2065 2.3402 41 1 1.1950 -0.1778 3.2245 42 1 1.8739 0.5270 6.1231 43 1 4.0648 -1.6214 1.2197 44 1 4.0390 0.1681 0.8980 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970534344.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:12 Heat of formation + Delta-G solvation = 93.617014 kcal Electronic energy + Delta-G solvation = -25416.221865 eV Core-core repulsion = 21757.540002 eV Total energy + Delta-G solvation = -3658.681863 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.62881 -39.77123 -38.13819 -37.33581 -35.05440 -34.12646 -32.66737 -32.01858 -30.30853 -27.52359 -26.27247 -24.97316 -24.77788 -24.05045 -22.73797 -22.29903 -21.34210 -20.56382 -19.38958 -18.15836 -17.93805 -17.05234 -16.73508 -15.97369 -15.72745 -15.28936 -14.85430 -14.82005 -14.62863 -14.32967 -14.02726 -13.93290 -13.56261 -13.20606 -12.66467 -12.38031 -12.13372 -11.98750 -11.79904 -11.67551 -11.45616 -11.32781 -11.26261 -11.21381 -10.92452 -10.89572 -10.72169 -10.38974 -10.20755 -9.86407 -9.77262 -9.69014 -9.62834 -9.47035 -8.98587 -8.82599 -6.90744 -5.79738 -3.12012 0.08347 0.68599 2.60956 2.98722 3.24991 3.32098 3.37051 3.42404 3.44943 3.59074 3.80111 4.11131 4.40823 4.42422 4.44946 4.57965 4.61106 4.65693 4.92924 5.07373 5.12245 5.26535 5.34372 5.38390 5.41513 5.49623 5.58533 5.67881 5.75212 5.81257 5.89659 5.92799 6.01137 6.19969 6.30103 6.38462 6.48587 6.51383 6.57535 6.71787 7.18959 7.31868 7.41306 7.53407 7.65111 7.95658 8.08234 9.02254 9.68196 10.56711 11.37540 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.020443 B = 0.002483 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.318041 B =11275.374281 C =12196.602701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.151 3.849 3 H 0.091 0.909 4 N -0.710 5.710 5 C 0.567 3.433 6 O -0.532 6.532 7 C -0.244 4.244 8 C 0.188 3.812 9 N -0.519 5.519 10 C 0.365 3.635 11 C -0.109 4.109 12 C -0.152 4.152 13 C -0.153 4.153 14 N -0.517 5.517 15 C 0.211 3.789 16 C -0.148 4.148 17 C 0.176 3.824 18 N -0.612 5.612 19 C -0.223 4.223 20 H 0.080 0.920 21 C -0.008 4.008 22 N -0.921 5.921 23 Si 0.912 3.088 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.124 3.876 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.397 0.603 32 H 0.174 0.826 33 H 0.132 0.868 34 H 0.112 0.888 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.183 0.817 39 H 0.090 0.910 40 H 0.028 0.972 41 H 0.076 0.924 42 H 0.253 0.747 43 H 0.041 0.959 44 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.289 -7.314 -23.661 24.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.047 3.953 3 H 0.109 0.891 4 N -0.360 5.360 5 C 0.352 3.648 6 O -0.409 6.409 7 C -0.252 4.252 8 C 0.021 3.979 9 N -0.232 5.232 10 C 0.100 3.900 11 C -0.129 4.129 12 C -0.189 4.189 13 C -0.191 4.191 14 N -0.230 5.230 15 C 0.044 3.956 16 C -0.168 4.168 17 C 0.050 3.950 18 N -0.338 5.338 19 C -0.351 4.351 20 H 0.098 0.902 21 C -0.205 4.205 22 N -0.568 5.568 23 Si 0.742 3.258 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.217 1.217 27 C -0.002 4.002 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.232 0.768 32 H 0.191 0.809 33 H 0.149 0.851 34 H 0.130 0.870 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.116 0.884 38 H 0.200 0.800 39 H 0.108 0.892 40 H 0.046 0.954 41 H 0.094 0.906 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -0.114 -6.915 -24.124 25.096 hybrid contribution 0.309 0.090 1.783 1.812 sum 0.195 -6.825 -22.341 23.361 Atomic orbital electron populations 1.22120 0.95160 1.01808 1.02620 1.21205 0.93976 0.97563 0.82603 0.89126 1.46062 1.66337 1.13958 1.09655 1.17726 0.78052 0.86466 0.82563 1.90797 1.50294 1.15120 1.84738 1.21883 1.08254 0.97239 0.97829 1.23492 0.87079 0.90722 0.96609 1.68142 1.15925 1.39775 0.99380 1.22391 0.88758 0.86714 0.92158 1.20707 1.02116 0.95734 0.94325 1.23055 1.00802 0.90510 1.04575 1.23012 0.89681 1.02423 1.04012 1.68287 1.13624 1.09287 1.31831 1.23527 0.85776 1.00561 0.85706 1.23889 0.97618 1.00858 0.94476 1.22192 0.89725 0.93879 0.89193 1.45940 1.16304 1.71909 0.99624 1.19061 0.98414 1.34830 0.82745 0.90248 1.24788 0.97068 1.01108 0.97528 1.69813 1.15243 1.47410 1.24356 0.86051 0.78935 0.77372 0.83430 1.20488 1.21717 1.21672 1.22552 0.93014 0.97696 0.86948 0.90804 0.92705 0.92700 0.76840 0.80904 0.85060 0.87001 0.87998 0.87708 0.88375 0.79987 0.89188 0.95390 0.90617 0.93642 0.94124 0.95010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.46 37.16 0.35 -1.73 16 2 C 0.15 2.17 2.29 -67.93 -0.16 2.01 16 3 H 0.09 1.52 7.48 -51.93 -0.39 1.13 16 4 N -0.71 -8.40 4.91 -54.75 -0.27 -8.67 16 5 C 0.57 7.32 7.75 -12.34 -0.10 7.22 16 6 O -0.53 -8.64 16.11 5.32 0.09 -8.55 16 7 C -0.24 -2.67 5.91 -104.69 -0.62 -3.29 16 8 C 0.19 1.79 10.81 -16.77 -0.18 1.61 16 9 N -0.52 -5.38 9.32 -10.40 -0.10 -5.48 16 10 C 0.37 3.86 7.31 -157.07 -1.15 2.71 16 11 C -0.11 -0.87 6.23 -91.78 -0.57 -1.44 16 12 C -0.15 -0.98 10.01 -26.73 -0.27 -1.24 16 13 C -0.15 -1.00 10.23 -26.73 -0.27 -1.28 16 14 N -0.52 -5.88 10.31 -10.40 -0.11 -5.98 16 15 C 0.21 2.34 10.88 -16.77 -0.18 2.15 16 16 C -0.15 -2.51 3.36 -89.69 -0.30 -2.81 16 17 C 0.18 3.96 6.90 -2.98 -0.02 3.94 16 18 N -0.61 -15.39 3.70 -177.90 -0.66 -16.04 16 19 C -0.22 -6.21 10.70 -15.06 -0.16 -6.37 16 20 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 21 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 22 N -0.92 -27.04 11.38 55.49 0.63 -26.41 16 23 Si 0.91 22.03 29.55 -169.99 -5.02 17.00 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 C 0.12 2.41 8.37 -2.97 -0.02 2.39 16 28 H 0.07 1.00 7.99 -51.93 -0.42 0.59 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.40 3.66 6.74 -40.82 -0.28 3.38 16 32 H 0.17 1.14 6.54 -52.49 -0.34 0.80 16 33 H 0.13 0.91 8.14 -51.92 -0.42 0.48 16 34 H 0.11 0.83 7.53 -51.93 -0.39 0.44 16 35 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.18 1.81 7.74 -52.49 -0.41 1.41 16 39 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 40 H 0.03 0.66 8.03 -51.93 -0.42 0.24 16 41 H 0.08 1.88 7.15 -51.93 -0.37 1.51 16 42 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.04 0.73 8.14 -51.92 -0.42 0.31 16 44 H 0.03 0.63 8.10 -51.93 -0.42 0.21 16 LS Contribution 370.89 15.07 5.59 5.59 Total: -1.00 -33.39 370.89 -9.95 -43.34 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -6.36 Total: 1.67 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: -3.75 Total: 3.54 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: -0.50 Total: -62.58 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.09 Total: -8.55 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.39 -9.95 -43.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970534344.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.958 kcal (2) G-P(sol) polarization free energy of solvation -33.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds