Wall clock time and date at job start Fri Apr 10 2020 18:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47246 * 2 1 4 4 N 1.46502 * 109.47030 * 239.99612 * 2 1 3 5 5 C 1.34776 * 119.99846 * 85.00115 * 4 2 1 6 6 O 1.21548 * 120.00266 * 0.02562 * 5 4 2 7 7 C 1.47830 * 119.99770 * 179.97438 * 5 4 2 8 8 C 1.39950 * 120.93989 * 359.72541 * 7 5 4 9 9 N 1.32150 * 118.92023 * 179.71341 * 8 7 5 10 10 C 1.31867 * 120.97235 * 0.56976 * 9 8 7 11 11 C 1.50693 * 118.95552 * 179.67640 * 10 9 8 12 12 C 1.52994 * 117.49833 * 8.65038 * 11 10 9 13 13 C 1.52995 * 117.50169 * 300.02439 * 11 10 9 14 14 N 1.31870 * 122.09186 * 359.70532 * 10 9 8 15 15 C 1.32153 * 120.96939 * 359.97438 * 14 10 9 16 16 C 1.53000 * 109.47006 * 119.99940 * 2 1 3 17 17 C 1.53948 * 113.74007 * 281.83396 * 16 2 1 18 18 N 1.47577 * 86.11934 * 222.04837 * 17 16 2 19 19 C 1.36933 * 134.49240 * 204.64652 * 18 17 16 20 20 H 1.08001 * 119.99656 * 179.97438 * 19 18 17 21 21 C 1.38809 * 120.00040 * 359.97438 * 19 18 17 22 22 N 1.31623 * 120.00308 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99868 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47464 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47226 * 120.00025 * 23 21 19 26 26 H 1.48505 * 109.47089 * 240.00263 * 23 21 19 27 27 C 1.47584 * 91.01223 * 24.64095 * 18 17 16 28 28 H 1.09003 * 109.46841 * 295.54660 * 1 2 3 29 29 H 1.09006 * 109.46928 * 55.54147 * 1 2 3 30 30 H 1.08993 * 109.47086 * 175.54271 * 1 2 3 31 31 H 0.97004 * 120.00019 * 264.99909 * 4 2 1 32 32 H 1.07997 * 120.53915 * 359.97371 * 8 7 5 33 33 H 1.09009 * 115.55031 * 154.34959 * 11 10 9 34 34 H 1.08996 * 117.50231 * 359.97438 * 12 11 10 35 35 H 1.09003 * 117.50314 * 145.01889 * 12 11 10 36 36 H 1.09003 * 117.50023 * 214.97849 * 13 11 10 37 37 H 1.09001 * 117.49826 * 0.02562 * 13 11 10 38 38 H 1.07999 * 120.53818 * 179.97438 * 15 14 10 39 39 H 1.09001 * 112.94751 * 53.56291 * 16 2 1 40 40 H 1.09000 * 113.76772 * 336.35479 * 17 16 2 41 41 H 1.09001 * 113.77056 * 107.74477 * 17 16 2 42 42 H 0.96994 * 119.99758 * 180.02562 * 22 21 19 43 43 H 1.09010 * 113.76639 * 221.05926 * 27 18 17 44 44 H 1.08990 * 113.76874 * 89.66267 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8585 1.1611 -2.4117 7 6 2.6404 -0.7152 -3.5640 8 6 2.9847 -2.0711 -3.5217 9 7 3.4159 -2.6556 -4.6257 10 6 3.5339 -1.9779 -5.7508 11 6 4.0372 -2.6881 -6.9809 12 6 4.1921 -4.2083 -6.9052 13 6 5.4324 -3.3124 -6.9151 14 7 3.2260 -0.6983 -5.8335 15 6 2.7812 -0.0364 -4.7797 16 6 2.0400 -0.7212 1.2493 17 6 1.9741 0.1329 2.5283 18 7 3.3071 -0.4164 2.8436 19 6 4.0155 -0.6124 3.9989 20 1 5.0036 -1.0465 3.9593 21 6 3.4637 -0.2530 5.2209 22 7 2.2593 0.2756 5.2692 23 14 4.4305 -0.5198 6.7968 24 1 5.7474 -1.1249 6.4733 25 1 4.6379 0.7839 7.4770 26 1 3.6744 -1.4310 7.6931 27 6 3.5698 -0.6697 1.4136 28 1 -0.3633 0.4432 0.9272 29 1 -0.3633 0.5815 -0.8474 30 1 -0.3633 -1.0245 -0.0799 31 1 2.2491 -1.6319 -1.1525 32 1 2.8955 -2.6315 -2.6029 33 1 3.7213 -2.2609 -7.9327 34 1 3.9305 -4.6947 -5.9655 35 1 3.9782 -4.7816 -7.8072 36 1 6.0344 -3.2963 -7.8237 37 1 5.9862 -3.2098 -5.9819 38 1 2.5315 1.0116 -4.8552 39 1 1.6196 -1.7203 1.3646 40 1 1.9746 1.2065 2.3402 41 1 1.1950 -0.1778 3.2245 42 1 1.8739 0.5270 6.1231 43 1 4.0648 -1.6214 1.2197 44 1 4.0390 0.1681 0.8980 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970534344.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:11 Heat of formation + Delta-G solvation = 72.385883 kcal Electronic energy + Delta-G solvation = -25417.142516 eV Core-core repulsion = 21757.540002 eV Total energy + Delta-G solvation = -3659.602514 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.44378 -40.91835 -39.62207 -37.94665 -36.32676 -34.99259 -34.18399 -33.35393 -31.48419 -29.33064 -27.16608 -26.42778 -25.76404 -25.62507 -23.42560 -23.22150 -22.39607 -21.60503 -20.89871 -19.04899 -18.96011 -18.66298 -17.77980 -17.16335 -16.80704 -16.53291 -16.00516 -15.97537 -15.75831 -15.51267 -15.20599 -15.01979 -14.72190 -14.52882 -14.09372 -13.43230 -13.30831 -13.27801 -13.07715 -12.96344 -12.71086 -12.70345 -12.38118 -12.32893 -12.06111 -11.99968 -11.89326 -11.81416 -11.60008 -11.41146 -11.23193 -11.00078 -10.87843 -10.49403 -10.42281 -10.09212 -8.91890 -7.91121 -5.24313 -0.73869 -0.10134 1.45459 1.46349 1.56401 1.67474 1.94824 2.46909 2.50908 2.62864 2.85938 3.14817 3.29621 3.32596 3.39587 3.54757 3.69814 3.87012 3.88111 3.94720 3.98278 4.09448 4.27260 4.33138 4.45019 4.58318 4.64238 4.77692 4.80925 4.83550 4.87421 4.93420 4.96508 5.08142 5.10779 5.19246 5.25977 5.32639 5.33163 5.45411 5.55388 5.65911 5.72816 5.94926 6.43839 6.86078 6.92600 7.09382 7.60852 8.56244 9.25985 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.020443 B = 0.002483 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.318041 B =11275.374281 C =12196.602701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.163 3.837 3 H 0.066 0.934 4 N -0.698 5.698 5 C 0.573 3.427 6 O -0.569 6.569 7 C -0.252 4.252 8 C 0.198 3.802 9 N -0.526 5.526 10 C 0.358 3.642 11 C -0.127 4.127 12 C -0.141 4.141 13 C -0.147 4.147 14 N -0.533 5.533 15 C 0.206 3.794 16 C -0.109 4.109 17 C 0.170 3.830 18 N -0.644 5.644 19 C -0.234 4.234 20 H 0.083 0.917 21 C -0.069 4.069 22 N -0.953 5.953 23 Si 0.977 3.023 24 H -0.265 1.265 25 H -0.295 1.295 26 H -0.290 1.290 27 C 0.125 3.875 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.413 0.587 32 H 0.204 0.796 33 H 0.140 0.860 34 H 0.102 0.898 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.086 0.914 38 H 0.186 0.814 39 H 0.109 0.891 40 H 0.011 0.989 41 H 0.047 0.953 42 H 0.249 0.751 43 H 0.064 0.936 44 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.474 -9.502 -25.141 26.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.058 3.942 3 H 0.084 0.916 4 N -0.349 5.349 5 C 0.359 3.641 6 O -0.449 6.449 7 C -0.259 4.259 8 C 0.030 3.970 9 N -0.239 5.239 10 C 0.094 3.906 11 C -0.147 4.147 12 C -0.179 4.179 13 C -0.185 4.185 14 N -0.246 5.246 15 C 0.039 3.961 16 C -0.128 4.128 17 C 0.044 3.956 18 N -0.371 5.371 19 C -0.362 4.362 20 H 0.101 0.899 21 C -0.261 4.261 22 N -0.602 5.602 23 Si 0.806 3.194 24 H -0.190 1.190 25 H -0.222 1.222 26 H -0.217 1.217 27 C 0.001 3.999 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.251 0.749 32 H 0.221 0.779 33 H 0.158 0.842 34 H 0.120 0.880 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.105 0.895 38 H 0.203 0.797 39 H 0.127 0.873 40 H 0.029 0.971 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.082 0.918 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 0.672 -9.146 -25.646 27.237 hybrid contribution 0.114 0.766 2.154 2.289 sum 0.786 -8.380 -23.492 24.954 Atomic orbital electron populations 1.22059 0.93833 1.03099 1.02147 1.20826 0.94850 0.96059 0.82461 0.91614 1.45796 1.65970 1.14608 1.08519 1.17902 0.77208 0.85933 0.83019 1.90786 1.51979 1.16863 1.85319 1.21643 1.09660 0.97875 0.96767 1.23961 0.85428 0.90152 0.97440 1.68261 1.16417 1.39681 0.99583 1.22952 0.87910 0.86645 0.93111 1.20894 1.03402 0.96749 0.93676 1.23118 1.00132 0.89502 1.05098 1.23084 0.89303 1.01664 1.04417 1.68348 1.14484 1.09871 1.31941 1.23660 0.85535 1.00911 0.85966 1.23472 0.95934 1.00546 0.92894 1.22104 0.88243 0.93741 0.91524 1.46379 1.17322 1.72146 1.01220 1.19452 0.98684 1.33921 0.84138 0.89914 1.25625 0.98155 1.01688 1.00680 1.69997 1.16753 1.48893 1.24580 0.85026 0.78154 0.76827 0.79416 1.18963 1.22235 1.21651 1.22714 0.94890 0.98554 0.83785 0.91661 0.92814 0.90540 0.74880 0.77905 0.84226 0.87960 0.85855 0.85686 0.89518 0.79750 0.87257 0.97099 0.93478 0.94244 0.91799 0.95016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.81 9.46 71.98 0.68 -3.13 16 2 C 0.16 4.49 2.29 44.99 0.10 4.60 16 3 H 0.07 2.20 7.48 -2.39 -0.02 2.19 16 4 N -0.70 -14.96 4.91 -445.42 -2.18 -17.15 16 5 C 0.57 14.06 7.75 86.78 0.67 14.73 16 6 O -0.57 -18.38 16.11 -3.87 -0.06 -18.45 16 7 C -0.25 -5.14 5.91 -19.91 -0.12 -5.25 16 8 C 0.20 3.27 10.81 85.06 0.92 4.19 16 9 N -0.53 -9.88 9.32 -186.81 -1.74 -11.62 16 10 C 0.36 7.09 7.31 138.70 1.01 8.10 16 11 C -0.13 -1.81 6.23 -11.55 -0.07 -1.88 16 12 C -0.14 -1.48 10.01 30.59 0.31 -1.18 16 13 C -0.15 -1.61 10.23 30.59 0.31 -1.30 16 14 N -0.53 -11.68 10.31 -186.80 -1.93 -13.61 16 15 C 0.21 4.43 10.88 85.06 0.93 5.36 16 16 C -0.11 -3.53 3.36 -10.13 -0.03 -3.56 16 17 C 0.17 7.78 6.90 86.48 0.60 8.38 16 18 N -0.64 -32.39 3.70 -716.74 -2.65 -35.04 16 19 C -0.23 -13.02 10.70 84.03 0.90 -12.12 16 20 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 21 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 22 N -0.95 -57.31 11.38 21.65 0.25 -57.07 16 23 Si 0.98 45.60 29.55 68.60 2.03 47.63 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 25 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 26 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 27 C 0.13 4.68 8.37 86.48 0.72 5.41 16 28 H 0.06 1.74 7.99 -2.39 -0.02 1.72 16 29 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 30 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.41 6.16 6.74 -92.71 -0.62 5.53 16 32 H 0.20 1.91 6.54 -2.91 -0.02 1.90 16 33 H 0.14 1.69 8.14 -2.38 -0.02 1.67 16 34 H 0.10 1.30 7.53 -2.39 -0.02 1.29 16 35 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.12 0.85 8.14 -2.39 -0.02 0.84 16 37 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.19 3.71 7.74 -2.91 -0.02 3.69 16 39 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 40 H 0.01 0.54 8.03 -2.39 -0.02 0.52 16 41 H 0.05 2.41 7.15 -2.39 -0.02 2.40 16 42 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 43 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 44 H 0.03 1.22 8.10 -2.39 -0.02 1.20 16 Total: -1.00 -73.49 370.89 1.50 -71.99 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.40 Total: 14.38 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: 7.40 Total: 18.93 kcal Atomic # 7 Polarization: -126.23 SS G_CDS: -8.26 Total: -134.48 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.06 Total: -18.45 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -73.49 1.50 -71.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970534344.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.375 kcal (2) G-P(sol) polarization free energy of solvation -73.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds