Wall clock time and date at job start Fri Apr 10 2020 18:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38806 * 120.42969 * 2 1 4 4 C 1.39488 * 118.26776 * 180.02562 * 3 2 1 5 5 C 1.48457 * 120.55255 * 180.02562 * 4 3 2 6 6 O 1.21478 * 119.99564 * 359.97438 * 5 4 3 7 7 N 1.34774 * 120.00136 * 180.02562 * 5 4 3 8 8 C 1.47197 * 126.70575 * 359.96852 * 7 5 4 9 9 C 1.53740 * 106.43342 * 211.37695 * 8 7 5 10 10 H 1.08989 * 112.28783 * 103.78787 * 9 8 7 11 11 C 1.54819 * 109.36422 * 229.34877 * 9 8 7 12 12 N 1.48340 * 104.14333 * 137.74099 * 11 9 8 13 13 C 1.36930 * 128.20116 * 138.19900 * 12 11 9 14 14 H 1.08005 * 119.99893 * 343.89146 * 13 12 11 15 15 C 1.38809 * 120.00433 * 163.61818 * 13 12 11 16 16 N 1.31622 * 119.99797 * 351.17628 * 15 13 12 17 17 Si 1.86801 * 120.00288 * 171.17509 * 15 13 12 18 18 H 1.48500 * 109.46828 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46908 * 120.00081 * 17 15 13 20 20 H 1.48500 * 109.47272 * 240.00156 * 17 15 13 21 21 C 1.48340 * 103.60009 * 317.93074 * 12 11 9 22 22 C 1.54457 * 104.32225 * 42.03717 * 21 12 11 23 23 C 1.52992 * 112.30106 * 96.98555 * 22 21 12 24 24 C 1.48677 * 126.64010 * 179.71721 * 7 5 4 25 25 N 1.33108 * 118.89986 * 0.27763 * 4 3 2 26 26 C 1.31557 * 120.73763 * 359.43870 * 25 4 3 27 27 N 1.31909 * 121.91260 * 0.58043 * 26 25 4 28 28 H 1.09005 * 109.47291 * 89.99603 * 1 2 3 29 29 H 1.08999 * 109.47272 * 210.00081 * 1 2 3 30 30 H 1.08999 * 109.46995 * 329.99653 * 1 2 3 31 31 H 1.08003 * 120.86119 * 0.02562 * 3 2 1 32 32 H 1.09006 * 110.05979 * 92.13423 * 8 7 5 33 33 H 1.08998 * 110.06512 * 330.62152 * 8 7 5 34 34 H 1.09000 * 110.58016 * 19.07858 * 11 9 8 35 35 H 1.08997 * 110.51972 * 256.37768 * 11 9 8 36 36 H 0.96996 * 119.99873 * 179.97438 * 16 15 13 37 37 H 1.08996 * 110.45960 * 160.74233 * 21 12 11 38 38 H 1.08992 * 110.46169 * 283.19874 * 21 12 11 39 39 H 1.08997 * 109.47302 * 61.00827 * 23 22 21 40 40 H 1.08996 * 109.47540 * 181.01565 * 23 22 21 41 41 H 1.09005 * 109.47097 * 301.00953 * 23 22 21 42 42 H 1.09000 * 109.98323 * 29.81185 * 24 7 5 43 43 H 1.09008 * 110.85862 * 267.83304 * 24 7 5 44 44 H 1.07991 * 119.04009 * 180.28619 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2100 1.1969 0.0000 4 6 3.6039 1.1442 -0.0005 5 6 4.4062 2.3933 0.0000 6 8 3.8492 3.4729 0.0005 7 7 5.7524 2.3295 -0.0011 8 6 6.5754 1.1091 -0.0021 9 6 7.8629 1.4521 0.7648 10 1 7.8677 1.0353 1.7718 11 6 9.0901 1.0044 -0.0662 12 7 10.0510 2.1258 0.0733 13 6 11.4043 2.0617 0.2717 14 1 11.8586 1.1390 0.6016 15 6 12.1932 3.1808 0.0434 16 7 11.6733 4.2472 -0.5265 17 14 13.9926 3.1733 0.5451 18 1 14.3294 1.8644 1.1604 19 1 14.8416 3.3892 -0.6540 20 1 14.2372 4.2601 1.5270 21 6 9.1996 3.3333 -0.0596 22 6 7.9364 3.0028 0.7654 23 6 7.9982 3.5835 2.1795 24 6 6.6952 3.4792 -0.0066 25 7 4.2027 -0.0445 -0.0067 26 6 3.4954 -1.1538 -0.0011 27 7 2.1764 -1.1397 -0.0006 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.6912 2.1441 0.0004 32 1 6.8152 0.8208 -1.0257 33 1 6.0451 0.3001 0.5002 34 1 8.8150 0.8663 -1.1119 35 1 9.5136 0.0867 0.3418 36 1 12.2245 5.0293 -0.6857 37 1 9.7073 4.2048 0.3535 38 1 8.9408 3.5038 -1.1045 39 1 8.0724 4.6695 2.1235 40 1 7.0955 3.3086 2.7250 41 1 8.8710 3.1860 2.6977 42 1 6.2446 4.3328 0.4997 43 1 6.9701 3.7508 -1.0259 44 1 4.0097 -2.1034 -0.0016 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091603856.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:15:04 Heat of formation + Delta-G solvation = 57.321517 kcal Electronic energy + Delta-G solvation = -26687.201630 eV Core-core repulsion = 23026.945877 eV Total energy + Delta-G solvation = -3660.255754 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.51886 -39.96924 -38.31272 -35.21958 -34.62416 -32.92914 -32.40864 -31.28680 -29.53118 -28.99310 -26.99005 -26.01022 -25.07953 -24.48817 -23.81318 -22.22234 -20.52274 -19.87604 -18.47390 -18.08920 -16.97367 -16.58360 -16.11706 -15.81905 -15.74320 -15.14075 -15.06926 -14.67075 -14.30165 -13.81612 -13.70548 -13.48876 -13.34427 -13.16713 -12.79516 -12.72349 -12.39093 -12.15647 -11.70357 -11.58015 -11.44016 -11.09617 -10.91224 -10.83369 -10.76180 -10.73432 -10.47493 -10.03494 -9.97690 -9.96964 -9.91003 -9.79621 -9.58640 -9.27548 -8.69273 -8.50186 -6.86668 -5.80367 -3.15101 0.27124 0.59949 2.66498 2.82112 3.36724 3.43145 3.45268 3.57276 3.65692 3.71115 4.13426 4.45222 4.55233 4.63878 4.89008 5.00271 5.05299 5.11218 5.20176 5.28717 5.37900 5.47703 5.53535 5.59667 5.67845 5.69988 5.88970 5.96387 6.01196 6.07797 6.18098 6.29116 6.34352 6.39590 6.50314 6.56698 6.66403 6.71591 6.79811 6.97488 7.26849 7.52445 7.58592 7.67549 7.70924 8.05311 8.19551 9.09082 9.72480 10.50942 11.33396 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.031874 B = 0.002995 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.253534 B = 9345.934799 C = 9893.550409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.175 3.825 3 C -0.172 4.172 4 C 0.145 3.855 5 C 0.577 3.423 6 O -0.537 6.537 7 N -0.588 5.588 8 C 0.101 3.899 9 C -0.109 4.109 10 H 0.082 0.918 11 C 0.132 3.868 12 N -0.593 5.593 13 C -0.223 4.223 14 H 0.076 0.924 15 C -0.006 4.006 16 N -0.914 5.914 17 Si 0.910 3.090 18 H -0.279 1.279 19 H -0.291 1.291 20 H -0.290 1.290 21 C 0.167 3.833 22 C -0.097 4.097 23 C -0.117 4.117 24 C 0.116 3.884 25 N -0.493 5.493 26 C 0.296 3.704 27 N -0.512 5.512 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.159 0.841 32 H 0.069 0.931 33 H 0.106 0.894 34 H 0.027 0.973 35 H 0.049 0.951 36 H 0.253 0.747 37 H 0.092 0.908 38 H 0.024 0.976 39 H 0.053 0.947 40 H 0.040 0.960 41 H 0.063 0.937 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.627 -8.178 1.972 21.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.028 3.972 3 C -0.195 4.195 4 C -0.002 4.002 5 C 0.363 3.637 6 O -0.414 6.414 7 N -0.318 5.318 8 C -0.022 4.022 9 C -0.130 4.130 10 H 0.101 0.899 11 C 0.006 3.994 12 N -0.316 5.316 13 C -0.352 4.352 14 H 0.094 0.906 15 C -0.203 4.203 16 N -0.561 5.561 17 Si 0.741 3.259 18 H -0.204 1.204 19 H -0.218 1.218 20 H -0.217 1.217 21 C 0.041 3.959 22 C -0.099 4.099 23 C -0.174 4.174 24 C -0.005 4.005 25 N -0.210 5.210 26 C 0.009 3.991 27 N -0.228 5.228 28 H 0.106 0.894 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.177 0.823 32 H 0.087 0.913 33 H 0.124 0.876 34 H 0.045 0.955 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.110 0.890 38 H 0.041 0.959 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.082 0.918 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -19.241 -8.294 1.938 21.042 hybrid contribution 0.640 0.732 0.086 0.976 sum -18.601 -7.563 2.024 20.181 Atomic orbital electron populations 1.20814 0.87255 1.04365 1.03977 1.21834 0.97903 0.87755 0.89755 1.22794 0.94579 1.01370 1.00780 1.21689 0.91953 0.92635 0.93945 1.17386 0.81047 0.86938 0.78371 1.90783 1.70559 1.28331 1.51719 1.48876 1.03883 1.10462 1.68571 1.22694 0.90928 0.87377 1.01201 1.23190 0.94701 0.95619 0.99534 0.89919 1.21912 0.89296 0.92519 0.95720 1.45073 1.02641 1.00106 1.83787 1.19020 0.80415 0.97952 1.37778 0.90579 1.24893 0.98033 0.97306 1.00051 1.69886 1.35207 1.04811 1.46169 0.86076 0.84647 0.77441 0.77763 1.20401 1.21760 1.21659 1.21770 0.86529 0.92813 0.94808 1.22557 0.96179 0.94637 0.96575 1.21549 1.00819 1.00270 0.94755 1.22642 0.88223 0.88499 1.01128 1.68631 1.40745 0.98584 1.13022 1.25104 0.86519 0.97059 0.90464 1.68214 1.10630 1.30448 1.13484 0.89381 0.89654 0.89794 0.82326 0.91289 0.87580 0.95514 0.93271 0.93639 0.89003 0.95860 0.92829 0.94113 0.91797 0.90477 0.90409 0.78016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.60 10.22 36.00 0.37 -0.24 16 2 C 0.18 1.64 6.83 -82.23 -0.56 1.08 16 3 C -0.17 -1.87 9.41 -38.91 -0.37 -2.24 16 4 C 0.14 1.92 6.76 -82.64 -0.56 1.36 16 5 C 0.58 9.15 7.89 -12.05 -0.10 9.06 16 6 O -0.54 -9.65 16.68 5.38 0.09 -9.56 16 7 N -0.59 -9.37 3.35 -171.32 -0.57 -9.95 16 8 C 0.10 1.50 5.86 -3.28 -0.02 1.48 16 9 C -0.11 -1.85 3.73 -88.08 -0.33 -2.17 16 10 H 0.08 1.35 7.93 -51.94 -0.41 0.94 16 11 C 0.13 2.60 6.78 -2.07 -0.01 2.59 16 12 N -0.59 -14.47 3.37 -168.24 -0.57 -15.04 16 13 C -0.22 -6.01 10.37 -15.06 -0.16 -6.17 16 14 H 0.08 1.99 7.85 -52.48 -0.41 1.58 16 15 C -0.01 -0.16 5.41 -17.43 -0.09 -0.25 16 16 N -0.91 -26.15 10.87 55.49 0.60 -25.54 16 17 Si 0.91 21.57 29.56 -169.99 -5.03 16.54 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 C 0.17 3.81 5.10 -2.26 -0.01 3.80 16 22 C -0.10 -1.76 1.07 -152.17 -0.16 -1.92 16 23 C -0.12 -2.00 8.57 37.15 0.32 -1.68 16 24 C 0.12 1.97 6.32 -2.46 -0.02 1.96 16 25 N -0.49 -5.97 6.78 -11.14 -0.08 -6.05 16 26 C 0.30 2.96 12.28 -92.26 -1.13 1.82 16 27 N -0.51 -5.26 10.36 -10.81 -0.11 -5.37 16 28 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.35 8.10 -51.93 -0.42 -0.07 16 31 H 0.16 1.55 7.74 -52.48 -0.41 1.14 16 32 H 0.07 1.04 7.15 -51.93 -0.37 0.67 16 33 H 0.11 1.45 5.49 -51.93 -0.28 1.16 16 34 H 0.03 0.53 7.22 -51.93 -0.37 0.16 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.09 2.36 6.23 -51.93 -0.32 2.04 16 38 H 0.02 0.56 7.18 -51.93 -0.37 0.19 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.08 1.30 7.63 -51.93 -0.40 0.90 16 43 H 0.08 1.35 7.11 -51.92 -0.37 0.99 16 44 H 0.20 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 353.70 15.07 5.33 5.33 Total: -1.00 -31.62 353.70 -9.40 -41.01 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -6.24 Total: 0.15 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: -2.83 Total: 8.47 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: -0.72 Total: -61.95 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.56 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.62 -9.40 -41.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091603856.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.334 kcal (2) G-P(sol) polarization free energy of solvation -31.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds