Wall clock time and date at job start Fri Apr 10 2020 18:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38806 * 120.42969 * 2 1 4 4 C 1.39488 * 118.26776 * 180.02562 * 3 2 1 5 5 C 1.48457 * 120.55255 * 180.02562 * 4 3 2 6 6 O 1.21478 * 119.99564 * 359.97438 * 5 4 3 7 7 N 1.34774 * 120.00136 * 180.02562 * 5 4 3 8 8 C 1.47197 * 126.70575 * 359.96852 * 7 5 4 9 9 C 1.53740 * 106.43342 * 211.37695 * 8 7 5 10 10 H 1.08989 * 112.28783 * 103.78787 * 9 8 7 11 11 C 1.54819 * 109.36422 * 229.34877 * 9 8 7 12 12 N 1.48340 * 104.14333 * 137.74099 * 11 9 8 13 13 C 1.36930 * 128.20116 * 138.19900 * 12 11 9 14 14 H 1.08005 * 119.99893 * 343.89146 * 13 12 11 15 15 C 1.38809 * 120.00433 * 163.61818 * 13 12 11 16 16 N 1.31622 * 119.99797 * 351.17628 * 15 13 12 17 17 Si 1.86801 * 120.00288 * 171.17509 * 15 13 12 18 18 H 1.48500 * 109.46828 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46908 * 120.00081 * 17 15 13 20 20 H 1.48500 * 109.47272 * 240.00156 * 17 15 13 21 21 C 1.48340 * 103.60009 * 317.93074 * 12 11 9 22 22 C 1.54457 * 104.32225 * 42.03717 * 21 12 11 23 23 C 1.52992 * 112.30106 * 96.98555 * 22 21 12 24 24 C 1.48677 * 126.64010 * 179.71721 * 7 5 4 25 25 N 1.33108 * 118.89986 * 0.27763 * 4 3 2 26 26 C 1.31557 * 120.73763 * 359.43870 * 25 4 3 27 27 N 1.31909 * 121.91260 * 0.58043 * 26 25 4 28 28 H 1.09005 * 109.47291 * 89.99603 * 1 2 3 29 29 H 1.08999 * 109.47272 * 210.00081 * 1 2 3 30 30 H 1.08999 * 109.46995 * 329.99653 * 1 2 3 31 31 H 1.08003 * 120.86119 * 0.02562 * 3 2 1 32 32 H 1.09006 * 110.05979 * 92.13423 * 8 7 5 33 33 H 1.08998 * 110.06512 * 330.62152 * 8 7 5 34 34 H 1.09000 * 110.58016 * 19.07858 * 11 9 8 35 35 H 1.08997 * 110.51972 * 256.37768 * 11 9 8 36 36 H 0.96996 * 119.99873 * 179.97438 * 16 15 13 37 37 H 1.08996 * 110.45960 * 160.74233 * 21 12 11 38 38 H 1.08992 * 110.46169 * 283.19874 * 21 12 11 39 39 H 1.08997 * 109.47302 * 61.00827 * 23 22 21 40 40 H 1.08996 * 109.47540 * 181.01565 * 23 22 21 41 41 H 1.09005 * 109.47097 * 301.00953 * 23 22 21 42 42 H 1.09000 * 109.98323 * 29.81185 * 24 7 5 43 43 H 1.09008 * 110.85862 * 267.83304 * 24 7 5 44 44 H 1.07991 * 119.04009 * 180.28619 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2100 1.1969 0.0000 4 6 3.6039 1.1442 -0.0005 5 6 4.4062 2.3933 0.0000 6 8 3.8492 3.4729 0.0005 7 7 5.7524 2.3295 -0.0011 8 6 6.5754 1.1091 -0.0021 9 6 7.8629 1.4521 0.7648 10 1 7.8677 1.0353 1.7718 11 6 9.0901 1.0044 -0.0662 12 7 10.0510 2.1258 0.0733 13 6 11.4043 2.0617 0.2717 14 1 11.8586 1.1390 0.6016 15 6 12.1932 3.1808 0.0434 16 7 11.6733 4.2472 -0.5265 17 14 13.9926 3.1733 0.5451 18 1 14.3294 1.8644 1.1604 19 1 14.8416 3.3892 -0.6540 20 1 14.2372 4.2601 1.5270 21 6 9.1996 3.3333 -0.0596 22 6 7.9364 3.0028 0.7654 23 6 7.9982 3.5835 2.1795 24 6 6.6952 3.4792 -0.0066 25 7 4.2027 -0.0445 -0.0067 26 6 3.4954 -1.1538 -0.0011 27 7 2.1764 -1.1397 -0.0006 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.6912 2.1441 0.0004 32 1 6.8152 0.8208 -1.0257 33 1 6.0451 0.3001 0.5002 34 1 8.8150 0.8663 -1.1119 35 1 9.5136 0.0867 0.3418 36 1 12.2245 5.0293 -0.6857 37 1 9.7073 4.2048 0.3535 38 1 8.9408 3.5038 -1.1045 39 1 8.0724 4.6695 2.1235 40 1 7.0955 3.3086 2.7250 41 1 8.8710 3.1860 2.6977 42 1 6.2446 4.3328 0.4997 43 1 6.9701 3.7508 -1.0259 44 1 4.0097 -2.1034 -0.0016 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091603856.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:15:02 Heat of formation + Delta-G solvation = 39.079766 kcal Electronic energy + Delta-G solvation = -26687.992652 eV Core-core repulsion = 23026.945877 eV Total energy + Delta-G solvation = -3661.046776 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.164 amu Computer time = 2.88 seconds Orbital eigenvalues (eV) -42.40956 -41.28091 -39.67967 -36.66154 -35.61067 -34.22205 -33.66463 -32.87346 -31.16283 -29.64582 -28.29391 -27.78101 -26.63342 -25.56416 -24.74863 -23.64741 -22.17684 -21.00645 -19.93414 -19.16993 -18.62353 -17.76423 -17.29129 -16.99441 -16.66951 -16.54985 -16.11493 -16.01547 -15.81865 -15.35679 -15.17793 -14.83326 -14.29083 -14.10216 -13.89853 -13.84132 -13.62068 -13.28890 -13.19363 -13.14292 -13.00598 -12.75181 -12.49123 -12.39661 -12.00017 -11.93358 -11.73292 -11.64311 -11.58015 -11.53105 -11.41198 -11.20536 -10.72183 -10.69328 -10.24474 -9.79466 -8.84779 -7.87242 -5.23188 -0.64472 -0.14623 1.47827 1.48706 1.56509 1.58978 1.64254 2.50538 2.70822 2.75490 3.03418 3.25019 3.32406 3.50635 3.54561 3.70505 3.90825 3.95022 3.96928 4.21482 4.27703 4.33181 4.42576 4.50288 4.52395 4.64374 4.74641 4.77354 4.82930 4.85959 4.93399 4.97402 5.01328 5.12480 5.17203 5.21362 5.28050 5.39254 5.46474 5.49162 5.55478 5.73837 5.75949 6.22368 6.35432 6.74585 6.95218 7.04338 7.72076 8.52300 9.25965 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.031874 B = 0.002995 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.253534 B = 9345.934799 C = 9893.550409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.181 3.819 3 C -0.173 4.173 4 C 0.124 3.876 5 C 0.577 3.423 6 O -0.563 6.563 7 N -0.591 5.591 8 C 0.113 3.887 9 C -0.097 4.097 10 H 0.097 0.903 11 C 0.131 3.869 12 N -0.617 5.617 13 C -0.230 4.230 14 H 0.081 0.919 15 C -0.063 4.063 16 N -0.946 5.946 17 Si 0.974 3.026 18 H -0.264 1.264 19 H -0.295 1.295 20 H -0.293 1.293 21 C 0.175 3.825 22 C -0.088 4.088 23 C -0.109 4.109 24 C 0.122 3.878 25 N -0.507 5.507 26 C 0.297 3.703 27 N -0.519 5.519 28 H 0.102 0.898 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.166 0.834 32 H 0.068 0.932 33 H 0.127 0.873 34 H 0.028 0.972 35 H 0.060 0.940 36 H 0.248 0.752 37 H 0.057 0.943 38 H 0.000 1.000 39 H 0.052 0.948 40 H 0.062 0.938 41 H 0.048 0.952 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.553 -10.366 2.824 24.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.033 3.967 3 C -0.196 4.196 4 C -0.022 4.022 5 C 0.364 3.636 6 O -0.442 6.442 7 N -0.321 5.321 8 C -0.009 4.009 9 C -0.118 4.118 10 H 0.115 0.885 11 C 0.005 3.995 12 N -0.341 5.341 13 C -0.359 4.359 14 H 0.099 0.901 15 C -0.256 4.256 16 N -0.595 5.595 17 Si 0.803 3.197 18 H -0.189 1.189 19 H -0.222 1.222 20 H -0.220 1.220 21 C 0.049 3.951 22 C -0.091 4.091 23 C -0.167 4.167 24 C 0.000 4.000 25 N -0.225 5.225 26 C 0.010 3.990 27 N -0.234 5.234 28 H 0.121 0.879 29 H 0.111 0.889 30 H 0.119 0.881 31 H 0.184 0.816 32 H 0.086 0.914 33 H 0.144 0.856 34 H 0.046 0.954 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.018 0.982 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.097 0.903 43 H 0.085 0.915 44 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -21.187 -10.526 2.797 23.822 hybrid contribution 1.137 1.342 -0.225 1.774 sum -20.049 -9.184 2.571 22.202 Atomic orbital electron populations 1.20960 0.84493 1.05588 1.05199 1.22410 0.99565 0.86863 0.87884 1.22945 0.93703 1.02460 1.00473 1.21360 0.92492 0.91985 0.96323 1.17808 0.80791 0.87741 0.77269 1.90758 1.70975 1.29724 1.52786 1.48867 1.04127 1.10134 1.68945 1.22633 0.89834 0.87389 1.01045 1.23094 0.94459 0.94244 1.00018 0.88508 1.22069 0.89370 0.91683 0.96340 1.45352 1.02735 1.02032 1.83958 1.19378 0.81855 0.97988 1.36687 0.90083 1.25670 1.01931 0.97220 1.00800 1.70076 1.36315 1.05255 1.47810 0.85075 0.79965 0.77714 0.76954 1.18862 1.22224 1.22028 1.21547 0.88031 0.91507 0.94033 1.22369 0.94289 0.95937 0.96461 1.21471 1.01090 1.00146 0.93955 1.22414 0.88096 0.89165 1.00321 1.68512 1.41338 0.98671 1.13962 1.25741 0.86689 0.97422 0.89158 1.68340 1.10803 1.30706 1.13576 0.87935 0.88906 0.88116 0.81611 0.91395 0.85588 0.95431 0.92144 0.94323 0.92460 0.98164 0.92910 0.91942 0.93288 0.90350 0.91469 0.74939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.22 71.23 0.73 -0.11 16 2 C 0.18 2.89 6.83 42.64 0.29 3.18 16 3 C -0.17 -3.41 9.41 22.71 0.21 -3.20 16 4 C 0.12 3.08 6.76 41.98 0.28 3.36 16 5 C 0.58 17.77 7.89 86.97 0.69 18.46 16 6 O -0.56 -20.02 16.68 -3.65 -0.06 -20.08 16 7 N -0.59 -18.32 3.35 -814.24 -2.73 -21.05 16 8 C 0.11 3.18 5.86 86.50 0.51 3.69 16 9 C -0.10 -3.16 3.73 -9.15 -0.03 -3.20 16 10 H 0.10 2.92 7.93 -2.39 -0.02 2.90 16 11 C 0.13 5.07 6.78 86.65 0.59 5.65 16 12 N -0.62 -30.57 3.37 -686.18 -2.31 -32.88 16 13 C -0.23 -12.50 10.37 84.03 0.87 -11.63 16 14 H 0.08 4.22 7.85 -2.91 -0.02 4.19 16 15 C -0.06 -3.49 5.41 84.86 0.46 -3.03 16 16 N -0.95 -56.08 10.87 21.65 0.24 -55.85 16 17 Si 0.97 45.01 29.56 68.60 2.03 47.04 16 18 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 19 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 20 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 21 C 0.18 8.28 5.10 86.52 0.44 8.72 16 22 C -0.09 -3.20 1.07 -50.67 -0.05 -3.25 16 23 C -0.11 -3.71 8.57 71.98 0.62 -3.09 16 24 C 0.12 4.16 6.32 86.21 0.54 4.71 16 25 N -0.51 -11.13 6.78 -189.17 -1.28 -12.41 16 26 C 0.30 5.07 12.28 180.92 2.22 7.29 16 27 N -0.52 -9.13 10.36 -188.11 -1.95 -11.08 16 28 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 29 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.10 0.49 8.10 -2.39 -0.02 0.48 16 31 H 0.17 2.95 7.74 -2.91 -0.02 2.93 16 32 H 0.07 1.95 7.15 -2.38 -0.02 1.93 16 33 H 0.13 3.11 5.49 -2.39 -0.01 3.10 16 34 H 0.03 1.08 7.22 -2.39 -0.02 1.06 16 35 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 37 H 0.06 3.10 6.23 -2.39 -0.01 3.08 16 38 H 0.00 0.02 7.18 -2.39 -0.02 0.01 16 39 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 42 H 0.08 2.65 7.63 -2.39 -0.02 2.63 16 43 H 0.07 2.42 7.11 -2.38 -0.02 2.41 16 44 H 0.23 2.22 8.06 -2.92 -0.02 2.19 16 Total: -1.00 -69.55 353.70 3.31 -66.25 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 1.01 Total: 12.51 kcal Atomic # 6 Polarization: 19.18 SS G_CDS: 8.36 Total: 27.55 kcal Atomic # 7 Polarization: -125.23 SS G_CDS: -8.03 Total: -133.26 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.06 Total: -20.08 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -69.55 3.31 -66.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091603856.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.325 kcal (2) G-P(sol) polarization free energy of solvation -69.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.89 seconds