Wall clock time and date at job start Fri Apr 10 2020 18:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50691 * 115.55211 * 2 1 4 4 O 1.21283 * 120.00381 * 214.32684 * 3 2 1 5 5 N 1.34778 * 120.00069 * 34.32717 * 3 2 1 6 6 C 1.46507 * 120.00127 * 180.02562 * 5 3 2 7 7 H 1.08999 * 110.51204 * 327.55286 * 6 5 3 8 8 C 1.54759 * 110.46214 * 205.00093 * 6 5 3 9 9 C 1.53380 * 101.45142 * 265.48326 * 8 6 5 10 10 C 1.52462 * 115.84911 * 106.82888 * 9 8 6 11 11 N 1.47256 * 87.71357 * 90.72065 * 10 9 8 12 12 C 1.36945 * 135.93747 * 206.21363 * 11 10 9 13 13 H 1.07997 * 119.99756 * 0.02562 * 12 11 10 14 14 C 1.38805 * 119.99878 * 179.97438 * 12 11 10 15 15 N 1.31624 * 120.00257 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99929 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47174 * 270.00277 * 16 14 12 18 18 H 1.48501 * 109.47062 * 30.00228 * 16 14 12 19 19 H 1.48499 * 109.46981 * 150.00382 * 16 14 12 20 20 C 1.47261 * 88.12144 * 26.46986 * 11 10 9 21 21 N 1.46042 * 106.81071 * 335.19252 * 9 8 6 22 22 C 1.37275 * 142.31398 * 196.37648 * 21 9 8 23 23 C 1.34512 * 106.92777 * 179.88466 * 22 21 9 24 24 N 1.33982 * 108.04802 * 0.02562 * 23 22 21 25 25 C 1.30846 * 109.35564 * 0.04246 * 24 23 22 26 26 C 1.53006 * 117.51565 * 145.70293 * 2 1 3 27 27 C 1.52999 * 60.00301 * 107.48084 * 26 2 1 28 28 H 1.09001 * 109.46791 * 85.58580 * 1 2 3 29 29 H 1.08997 * 109.47473 * 205.58396 * 1 2 3 30 30 H 1.08990 * 109.47045 * 325.58690 * 1 2 3 31 31 H 0.96995 * 119.99758 * 359.97438 * 5 3 2 32 32 H 1.09001 * 111.02979 * 147.44012 * 8 6 5 33 33 H 1.08996 * 111.06245 * 23.53828 * 8 6 5 34 34 H 1.09002 * 113.50624 * 336.00892 * 10 9 8 35 35 H 1.08998 * 113.57232 * 205.44092 * 10 9 8 36 36 H 0.97001 * 119.99885 * 179.97438 * 15 14 12 37 37 H 1.08998 * 113.50776 * 88.23860 * 20 11 10 38 38 H 1.08992 * 113.51145 * 218.81078 * 20 11 10 39 39 H 1.08008 * 126.53641 * 359.86249 * 22 21 9 40 40 H 1.08005 * 125.97920 * 179.97438 * 23 22 21 41 41 H 1.09005 * 117.49521 * 214.97229 * 26 2 1 42 42 H 1.09002 * 117.49781 * 359.97438 * 26 2 1 43 43 H 1.08997 * 117.49780 * 252.51205 * 27 26 2 44 44 H 1.08993 * 117.49906 * 107.48300 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3595 0.0000 4 8 3.2241 1.5326 -0.5923 5 7 1.6010 2.3833 0.6582 6 6 2.2327 3.7052 0.6577 7 1 3.3180 3.6099 0.6239 8 6 1.7990 4.5125 1.9048 9 6 0.6172 5.3178 1.3504 10 6 -0.7662 4.8684 1.8072 11 7 -0.6376 5.8127 2.9297 12 6 -1.1491 5.9113 4.1962 13 1 -1.8289 5.1571 4.5643 14 6 -0.7931 6.9801 5.0072 15 7 0.0357 7.8990 4.5588 16 14 -1.4914 7.1150 6.7346 17 1 -2.7592 7.8872 6.6971 18 1 -1.7557 5.7550 7.2692 19 1 -0.5142 7.8100 7.6106 20 6 0.2763 6.6081 2.0927 21 7 0.8227 5.4314 -0.0910 22 6 0.4144 6.1391 -1.1941 23 6 1.0914 5.6476 -2.2474 24 7 1.8910 4.6674 -1.8061 25 6 1.7358 4.5296 -0.5142 26 6 2.2369 -1.1210 0.7646 27 6 2.2365 -1.1208 -0.7654 28 1 -0.3633 0.0791 -1.0246 29 1 -0.3634 -0.9269 0.4438 30 1 -0.3633 0.8477 0.5807 31 1 0.7658 2.2450 1.1316 32 1 2.5986 5.1724 2.2411 33 1 1.4779 3.8497 2.7083 34 1 -0.8032 3.8246 2.1190 35 1 -1.5617 5.1286 1.1089 36 1 0.2842 8.6461 5.1255 37 1 -0.2331 7.3451 1.4720 38 1 1.1165 7.0288 2.6449 39 1 -0.3122 6.9381 -1.2128 40 1 1.0048 5.9837 -3.2702 41 1 3.1721 -0.8751 1.2677 42 1 1.6119 -1.8586 1.2682 43 1 1.6113 -1.8583 -1.2685 44 1 3.1713 -0.8747 -1.2688 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092369542.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:15:31 Heat of formation + Delta-G solvation = 131.077721 kcal Electronic energy + Delta-G solvation = -27086.154685 eV Core-core repulsion = 23429.097240 eV Total energy + Delta-G solvation = -3657.057445 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.33637 -40.07596 -38.77203 -36.91536 -35.45899 -33.33571 -31.91187 -30.82578 -28.76555 -28.19994 -27.46247 -25.22953 -24.87776 -23.30117 -22.64858 -22.03879 -21.28604 -19.84156 -19.63636 -18.70997 -17.27901 -17.01695 -16.60787 -15.67896 -15.15760 -15.06913 -14.80236 -14.58498 -14.21962 -14.09728 -14.01552 -13.65954 -13.34112 -13.22704 -12.86771 -12.69546 -12.62941 -12.43004 -12.19154 -11.94010 -11.65771 -11.33492 -11.23917 -11.09925 -10.90292 -10.73287 -10.57020 -10.29872 -10.17835 -9.79556 -9.76397 -9.54641 -9.24582 -9.08926 -8.96318 -8.09282 -7.23205 -6.02771 -3.38693 2.24878 2.51085 2.98758 3.10087 3.25460 3.31149 3.32753 3.58648 3.67327 4.11198 4.24646 4.43418 4.51300 4.60675 4.65754 4.73131 4.78391 4.84432 5.01426 5.26220 5.36521 5.40181 5.44255 5.50743 5.53954 5.60180 5.65948 5.70868 5.78333 5.87447 5.92713 5.98134 5.98289 6.01775 6.06011 6.17290 6.42490 6.70524 6.75483 6.84235 7.16682 7.18019 7.42250 7.50027 7.68185 8.24485 8.47554 8.75736 9.42983 10.27051 11.14361 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.014001 B = 0.004114 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.391829 B = 6805.036311 C = 8138.021505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.166 4.166 3 C 0.554 3.446 4 O -0.526 6.526 5 N -0.712 5.712 6 C 0.226 3.774 7 H 0.116 0.884 8 C -0.092 4.092 9 C 0.092 3.908 10 C 0.123 3.877 11 N -0.595 5.595 12 C -0.228 4.228 13 H 0.087 0.913 14 C 0.000 4.000 15 N -0.916 5.916 16 Si 0.917 3.083 17 H -0.287 1.287 18 H -0.278 1.278 19 H -0.288 1.288 20 C 0.163 3.837 21 N -0.447 5.447 22 C -0.024 4.024 23 C -0.037 4.037 24 N -0.469 5.469 25 C 0.165 3.835 26 C -0.149 4.149 27 C -0.144 4.144 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.402 0.598 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.050 0.950 35 H 0.040 0.960 36 H 0.258 0.742 37 H 0.033 0.967 38 H 0.085 0.915 39 H 0.168 0.832 40 H 0.170 0.830 41 H 0.099 0.901 42 H 0.104 0.896 43 H 0.101 0.899 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.264 -12.988 -7.245 14.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.169 4.169 3 C 0.340 3.660 4 O -0.402 6.402 5 N -0.365 5.365 6 C 0.119 3.881 7 H 0.133 0.867 8 C -0.130 4.130 9 C 0.007 3.993 10 C -0.004 4.004 11 N -0.321 5.321 12 C -0.354 4.354 13 H 0.104 0.896 14 C -0.198 4.198 15 N -0.562 5.562 16 Si 0.747 3.253 17 H -0.214 1.214 18 H -0.203 1.203 19 H -0.214 1.214 20 C 0.037 3.963 21 N -0.129 5.129 22 C -0.158 4.158 23 C -0.186 4.186 24 N -0.188 5.188 25 C -0.099 4.099 26 C -0.187 4.187 27 C -0.181 4.181 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.239 0.761 32 H 0.124 0.876 33 H 0.129 0.871 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.051 0.949 38 H 0.104 0.896 39 H 0.185 0.815 40 H 0.187 0.813 41 H 0.118 0.882 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.347 -13.021 -7.644 15.280 hybrid contribution -1.715 1.021 1.332 2.400 sum 0.632 -11.999 -6.312 13.573 Atomic orbital electron populations 1.21347 0.90468 1.02596 1.02707 1.21472 0.95927 0.89497 1.10013 1.19462 0.84319 0.84588 0.77633 1.90719 1.23146 1.83813 1.42492 1.45942 1.27563 1.08562 1.54426 1.19827 0.99206 0.80471 0.88581 0.86653 1.22477 0.96801 0.98109 0.95644 1.23376 0.97548 1.03312 0.75030 1.22567 0.91961 0.95542 0.90341 1.45394 1.53488 1.24402 1.08855 1.18900 1.23400 1.07610 0.85526 0.89573 1.24837 0.99410 0.96619 0.98894 1.69800 1.36537 1.13267 1.36561 0.86050 0.78208 0.77847 0.83212 1.21384 1.20343 1.21379 1.22264 0.94862 0.89739 0.89439 1.46461 1.31347 1.27078 1.08026 1.22384 1.05980 1.02385 0.85022 1.22233 0.99197 0.98310 0.98840 1.69810 1.23329 1.18428 1.07247 1.24496 0.96762 0.96225 0.92378 1.23108 1.02071 0.98350 0.95152 1.23024 1.02688 0.98114 0.94315 0.91564 0.91400 0.91908 0.76147 0.87635 0.87132 0.93210 0.94258 0.93201 0.94915 0.89644 0.81496 0.81316 0.88244 0.87805 0.88038 0.87390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 9.79 37.16 0.36 -0.64 16 2 C -0.17 -1.78 2.62 -155.66 -0.41 -2.19 16 3 C 0.55 7.90 7.39 -10.99 -0.08 7.82 16 4 O -0.53 -9.46 15.91 5.55 0.09 -9.38 16 5 N -0.71 -9.51 5.00 -53.56 -0.27 -9.78 16 6 C 0.23 3.42 3.29 -67.68 -0.22 3.20 16 7 H 0.12 1.79 7.56 -51.93 -0.39 1.40 16 8 C -0.09 -1.38 6.13 -25.61 -0.16 -1.54 16 9 C 0.09 1.60 1.66 -133.41 -0.22 1.38 16 10 C 0.12 2.26 8.15 -7.89 -0.06 2.19 16 11 N -0.60 -13.61 3.76 -184.71 -0.69 -14.30 16 12 C -0.23 -5.77 10.74 -15.06 -0.16 -5.93 16 13 H 0.09 2.09 7.83 -52.49 -0.41 1.68 16 14 C 0.00 0.00 5.50 -17.43 -0.10 -0.09 16 15 N -0.92 -25.16 11.51 55.49 0.64 -24.52 16 16 Si 0.92 20.52 29.55 -169.99 -5.02 15.50 16 17 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 19 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 20 C 0.16 3.51 6.95 -7.77 -0.05 3.46 16 21 N -0.45 -7.67 3.41 -100.95 -0.34 -8.01 16 22 C -0.02 -0.38 12.03 -16.43 -0.20 -0.58 16 23 C -0.04 -0.59 11.86 -17.93 -0.21 -0.81 16 24 N -0.47 -8.90 11.25 -10.49 -0.12 -9.02 16 25 C 0.17 2.92 8.23 -154.57 -1.27 1.65 16 26 C -0.15 -1.31 9.88 -26.73 -0.26 -1.58 16 27 C -0.14 -1.40 9.76 -26.73 -0.26 -1.66 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.47 7.90 -51.93 -0.41 0.06 16 30 H 0.06 0.55 6.38 -51.93 -0.33 0.22 16 31 H 0.40 4.66 6.93 -40.82 -0.28 4.38 16 32 H 0.11 1.56 8.14 -51.93 -0.42 1.14 16 33 H 0.11 1.57 7.87 -51.93 -0.41 1.16 16 34 H 0.05 0.81 8.09 -51.93 -0.42 0.39 16 35 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 37 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 2.03 7.14 -51.93 -0.37 1.66 16 39 H 0.17 2.29 8.06 -52.48 -0.42 1.87 16 40 H 0.17 2.19 8.06 -52.48 -0.42 1.77 16 41 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.10 0.70 8.05 -51.93 -0.42 0.28 16 43 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.11 1.21 7.67 -51.93 -0.40 0.82 16 LS Contribution 364.37 15.07 5.49 5.49 Total: -1.00 -32.16 364.37 -9.90 -42.06 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -6.36 Total: 7.27 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: -3.31 Total: 4.69 kcal Atomic # 7 Polarization: -64.84 SS G_CDS: -0.78 Total: -65.63 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.09 Total: -9.38 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.16 -9.90 -42.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092369542.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.133 kcal (2) G-P(sol) polarization free energy of solvation -32.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds