Wall clock time and date at job start Fri Apr 10 2020 18:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50691 * 115.55211 * 2 1 4 4 O 1.21283 * 120.00381 * 214.32684 * 3 2 1 5 5 N 1.34778 * 120.00069 * 34.32717 * 3 2 1 6 6 C 1.46507 * 120.00127 * 180.02562 * 5 3 2 7 7 H 1.08999 * 110.51204 * 327.55286 * 6 5 3 8 8 C 1.54759 * 110.46214 * 205.00093 * 6 5 3 9 9 C 1.53380 * 101.45142 * 265.48326 * 8 6 5 10 10 C 1.52462 * 115.84911 * 106.82888 * 9 8 6 11 11 N 1.47256 * 87.71357 * 90.72065 * 10 9 8 12 12 C 1.36945 * 135.93747 * 206.21363 * 11 10 9 13 13 H 1.07997 * 119.99756 * 0.02562 * 12 11 10 14 14 C 1.38805 * 119.99878 * 179.97438 * 12 11 10 15 15 N 1.31624 * 120.00257 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99929 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47174 * 270.00277 * 16 14 12 18 18 H 1.48501 * 109.47062 * 30.00228 * 16 14 12 19 19 H 1.48499 * 109.46981 * 150.00382 * 16 14 12 20 20 C 1.47261 * 88.12144 * 26.46986 * 11 10 9 21 21 N 1.46042 * 106.81071 * 335.19252 * 9 8 6 22 22 C 1.37275 * 142.31398 * 196.37648 * 21 9 8 23 23 C 1.34512 * 106.92777 * 179.88466 * 22 21 9 24 24 N 1.33982 * 108.04802 * 0.02562 * 23 22 21 25 25 C 1.30846 * 109.35564 * 0.04246 * 24 23 22 26 26 C 1.53006 * 117.51565 * 145.70293 * 2 1 3 27 27 C 1.52999 * 60.00301 * 107.48084 * 26 2 1 28 28 H 1.09001 * 109.46791 * 85.58580 * 1 2 3 29 29 H 1.08997 * 109.47473 * 205.58396 * 1 2 3 30 30 H 1.08990 * 109.47045 * 325.58690 * 1 2 3 31 31 H 0.96995 * 119.99758 * 359.97438 * 5 3 2 32 32 H 1.09001 * 111.02979 * 147.44012 * 8 6 5 33 33 H 1.08996 * 111.06245 * 23.53828 * 8 6 5 34 34 H 1.09002 * 113.50624 * 336.00892 * 10 9 8 35 35 H 1.08998 * 113.57232 * 205.44092 * 10 9 8 36 36 H 0.97001 * 119.99885 * 179.97438 * 15 14 12 37 37 H 1.08998 * 113.50776 * 88.23860 * 20 11 10 38 38 H 1.08992 * 113.51145 * 218.81078 * 20 11 10 39 39 H 1.08008 * 126.53641 * 359.86249 * 22 21 9 40 40 H 1.08005 * 125.97920 * 179.97438 * 23 22 21 41 41 H 1.09005 * 117.49521 * 214.97229 * 26 2 1 42 42 H 1.09002 * 117.49781 * 359.97438 * 26 2 1 43 43 H 1.08997 * 117.49780 * 252.51205 * 27 26 2 44 44 H 1.08993 * 117.49906 * 107.48300 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3595 0.0000 4 8 3.2241 1.5326 -0.5923 5 7 1.6010 2.3833 0.6582 6 6 2.2327 3.7052 0.6577 7 1 3.3180 3.6099 0.6239 8 6 1.7990 4.5125 1.9048 9 6 0.6172 5.3178 1.3504 10 6 -0.7662 4.8684 1.8072 11 7 -0.6376 5.8127 2.9297 12 6 -1.1491 5.9113 4.1962 13 1 -1.8289 5.1571 4.5643 14 6 -0.7931 6.9801 5.0072 15 7 0.0357 7.8990 4.5588 16 14 -1.4914 7.1150 6.7346 17 1 -2.7592 7.8872 6.6971 18 1 -1.7557 5.7550 7.2692 19 1 -0.5142 7.8100 7.6106 20 6 0.2763 6.6081 2.0927 21 7 0.8227 5.4314 -0.0910 22 6 0.4144 6.1391 -1.1941 23 6 1.0914 5.6476 -2.2474 24 7 1.8910 4.6674 -1.8061 25 6 1.7358 4.5296 -0.5142 26 6 2.2369 -1.1210 0.7646 27 6 2.2365 -1.1208 -0.7654 28 1 -0.3633 0.0791 -1.0246 29 1 -0.3634 -0.9269 0.4438 30 1 -0.3633 0.8477 0.5807 31 1 0.7658 2.2450 1.1316 32 1 2.5986 5.1724 2.2411 33 1 1.4779 3.8497 2.7083 34 1 -0.8032 3.8246 2.1190 35 1 -1.5617 5.1286 1.1089 36 1 0.2842 8.6461 5.1255 37 1 -0.2331 7.3451 1.4720 38 1 1.1165 7.0288 2.6449 39 1 -0.3122 6.9381 -1.2128 40 1 1.0048 5.9837 -3.2702 41 1 3.1721 -0.8751 1.2677 42 1 1.6119 -1.8586 1.2682 43 1 1.6113 -1.8583 -1.2685 44 1 3.1713 -0.8747 -1.2688 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092369542.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:15:31 Heat of formation + Delta-G solvation = 111.397245 kcal Electronic energy + Delta-G solvation = -27087.008095 eV Core-core repulsion = 23429.097240 eV Total energy + Delta-G solvation = -3657.910854 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.69068 -41.13041 -40.28706 -37.85351 -36.75521 -34.86583 -33.60906 -32.08396 -29.75210 -29.56220 -28.90644 -26.82957 -26.28452 -24.55637 -23.44490 -23.32271 -22.71022 -21.19830 -20.68521 -20.13317 -18.88007 -18.12550 -17.88139 -17.21396 -16.60875 -16.27152 -16.20326 -15.79925 -15.53790 -15.34497 -15.23283 -14.96750 -14.72129 -14.29698 -14.22999 -13.93703 -13.70307 -13.44623 -13.31424 -13.22693 -12.98439 -12.91495 -12.70878 -12.41323 -12.34433 -12.17845 -12.03418 -11.57315 -11.49629 -10.98840 -10.94715 -10.92723 -10.83528 -10.47233 -10.36163 -9.39820 -9.09461 -7.97881 -5.34234 0.94523 1.44178 1.48903 1.49301 1.58495 1.70463 1.89122 2.34747 2.45558 2.79227 2.89000 3.15624 3.20707 3.31023 3.48198 3.56761 3.66015 3.74317 3.93241 4.02602 4.05622 4.16683 4.32863 4.52085 4.54161 4.61409 4.64093 4.72513 4.74371 4.79463 4.82181 4.84615 4.92299 5.00932 5.02786 5.10283 5.25031 5.27165 5.29299 5.35063 5.42966 5.76819 5.87820 6.09277 6.42432 6.80428 7.14281 7.17169 7.51171 8.41903 9.19231 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.014001 B = 0.004114 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.391829 B = 6805.036311 C = 8138.021505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.178 4.178 3 C 0.548 3.452 4 O -0.571 6.571 5 N -0.702 5.702 6 C 0.234 3.766 7 H 0.109 0.891 8 C -0.083 4.083 9 C 0.116 3.884 10 C 0.129 3.871 11 N -0.617 5.617 12 C -0.230 4.230 13 H 0.097 0.903 14 C -0.056 4.056 15 N -0.950 5.950 16 Si 0.979 3.021 17 H -0.291 1.291 18 H -0.261 1.261 19 H -0.297 1.297 20 C 0.162 3.838 21 N -0.452 5.452 22 C -0.031 4.031 23 C -0.038 4.038 24 N -0.504 5.504 25 C 0.156 3.844 26 C -0.131 4.131 27 C -0.148 4.148 28 H 0.060 0.940 29 H 0.093 0.907 30 H 0.062 0.938 31 H 0.413 0.587 32 H 0.105 0.895 33 H 0.124 0.876 34 H 0.080 0.920 35 H 0.041 0.959 36 H 0.250 0.750 37 H 0.017 0.983 38 H 0.057 0.943 39 H 0.188 0.812 40 H 0.198 0.802 41 H 0.090 0.910 42 H 0.134 0.866 43 H 0.125 0.875 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.121 -15.211 -6.914 16.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.182 4.182 3 C 0.337 3.663 4 O -0.450 6.450 5 N -0.355 5.355 6 C 0.126 3.874 7 H 0.127 0.873 8 C -0.121 4.121 9 C 0.031 3.969 10 C 0.002 3.998 11 N -0.343 5.343 12 C -0.357 4.357 13 H 0.115 0.885 14 C -0.250 4.250 15 N -0.598 5.598 16 Si 0.807 3.193 17 H -0.218 1.218 18 H -0.186 1.186 19 H -0.223 1.223 20 C 0.035 3.965 21 N -0.135 5.135 22 C -0.164 4.164 23 C -0.186 4.186 24 N -0.223 5.223 25 C -0.108 4.108 26 C -0.169 4.169 27 C -0.185 4.185 28 H 0.079 0.921 29 H 0.111 0.889 30 H 0.081 0.919 31 H 0.251 0.749 32 H 0.124 0.876 33 H 0.143 0.857 34 H 0.098 0.902 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.034 0.966 38 H 0.075 0.925 39 H 0.205 0.795 40 H 0.215 0.785 41 H 0.109 0.891 42 H 0.152 0.848 43 H 0.144 0.856 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.924 -15.278 -7.330 16.971 hybrid contribution -1.276 1.729 1.114 2.421 sum -0.352 -13.549 -6.216 14.911 Atomic orbital electron populations 1.21368 0.88696 1.03970 1.02694 1.21517 0.97065 0.87659 1.11913 1.20161 0.83775 0.85878 0.76535 1.90697 1.25228 1.84684 1.44370 1.45857 1.27770 1.07701 1.54194 1.19697 0.98946 0.81120 0.87650 0.87334 1.22469 0.95854 0.97948 0.95848 1.22986 0.98118 1.00634 0.75165 1.22644 0.92207 0.96194 0.88718 1.45588 1.53775 1.25709 1.09272 1.19310 1.22529 1.07323 0.86536 0.88544 1.25606 1.00241 0.96766 1.02387 1.69979 1.38364 1.13880 1.37574 0.85074 0.76847 0.78220 0.79149 1.21775 1.18569 1.22327 1.22122 0.93757 0.91131 0.89463 1.46481 1.31643 1.27475 1.07911 1.22832 1.06275 1.02645 0.84650 1.22745 0.98252 0.97384 1.00218 1.69813 1.24584 1.19855 1.08093 1.24873 0.96761 0.96600 0.92569 1.23227 1.01755 0.97339 0.94531 1.23087 1.02030 0.98121 0.95256 0.92080 0.88866 0.91902 0.74891 0.87644 0.85741 0.90243 0.94177 0.94055 0.96576 0.92487 0.79523 0.78516 0.89099 0.84801 0.85640 0.89678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 9.79 71.98 0.70 -0.91 16 2 C -0.18 -3.47 2.62 -52.92 -0.14 -3.61 16 3 C 0.55 15.23 7.39 87.65 0.65 15.87 16 4 O -0.57 -20.80 15.91 -3.04 -0.05 -20.85 16 5 N -0.70 -17.84 5.00 -441.77 -2.21 -20.05 16 6 C 0.23 6.93 3.29 45.15 0.15 7.07 16 7 H 0.11 3.40 7.56 -2.39 -0.02 3.39 16 8 C -0.08 -2.41 6.13 31.32 0.19 -2.22 16 9 C 0.12 3.94 1.66 3.93 0.01 3.94 16 10 C 0.13 4.48 8.15 83.47 0.68 5.16 16 11 N -0.62 -27.80 3.76 -738.30 -2.77 -30.57 16 12 C -0.23 -11.43 10.74 84.03 0.90 -10.52 16 13 H 0.10 4.49 7.83 -2.91 -0.02 4.47 16 14 C -0.06 -2.91 5.50 84.86 0.47 -2.45 16 15 N -0.95 -53.22 11.51 21.65 0.25 -52.97 16 16 Si 0.98 41.97 29.55 68.60 2.03 44.00 16 17 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 18 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 19 H -0.30 -13.02 7.11 99.48 0.71 -12.31 16 20 C 0.16 7.05 6.95 83.55 0.58 7.63 16 21 N -0.45 -15.16 3.41 -473.30 -1.61 -16.77 16 22 C -0.03 -0.96 12.03 82.99 1.00 0.04 16 23 C -0.04 -1.19 11.86 83.51 0.99 -0.20 16 24 N -0.50 -18.87 11.25 -187.09 -2.11 -20.97 16 25 C 0.16 5.42 8.23 138.30 1.14 6.55 16 26 C -0.13 -1.96 9.88 30.60 0.30 -1.66 16 27 C -0.15 -2.61 9.76 30.60 0.30 -2.31 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.09 0.90 7.90 -2.39 -0.02 0.88 16 30 H 0.06 0.91 6.38 -2.39 -0.02 0.89 16 31 H 0.41 8.61 6.93 -92.71 -0.64 7.97 16 32 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 33 H 0.12 3.30 7.87 -2.39 -0.02 3.28 16 34 H 0.08 2.32 8.09 -2.39 -0.02 2.30 16 35 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 37 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.06 2.80 7.14 -2.39 -0.02 2.78 16 39 H 0.19 4.88 8.06 -2.91 -0.02 4.86 16 40 H 0.20 4.74 8.06 -2.91 -0.02 4.72 16 41 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 42 H 0.13 1.22 8.05 -2.39 -0.02 1.20 16 43 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.08 1.91 7.67 -2.39 -0.02 1.89 16 Total: -1.00 -70.49 364.37 1.83 -68.66 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: 0.38 Total: 27.12 kcal Atomic # 6 Polarization: 14.48 SS G_CDS: 7.92 Total: 22.40 kcal Atomic # 7 Polarization: -132.88 SS G_CDS: -8.45 Total: -141.33 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.05 Total: -20.85 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -70.49 1.83 -68.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092369542.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.060 kcal (2) G-P(sol) polarization free energy of solvation -70.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds