Wall clock time and date at job start Fri Apr 10 2020 18:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 115.55287 * 2 1 4 4 C 1.53003 * 117.51686 * 145.69365 * 2 1 3 5 5 C 1.52998 * 117.50067 * 214.32263 * 2 1 3 6 6 H 1.09004 * 117.49881 * 359.97438 * 5 2 1 7 7 C 1.50693 * 117.50040 * 144.99830 * 5 2 1 8 8 O 1.21277 * 120.00008 * 0.02562 * 7 5 2 9 9 N 1.34783 * 120.00006 * 180.02562 * 7 5 2 10 10 C 1.46498 * 119.99614 * 180.02562 * 9 7 5 11 11 H 1.08996 * 110.51944 * 36.09975 * 10 9 7 12 12 C 1.54774 * 110.47214 * 158.64426 * 10 9 7 13 13 C 1.53375 * 101.46697 * 94.55182 * 12 10 9 14 14 C 1.52443 * 115.89211 * 252.95100 * 13 12 10 15 15 N 1.47264 * 87.72479 * 218.52057 * 14 13 12 16 16 C 1.36943 * 135.94230 * 206.22470 * 15 14 13 17 17 H 1.08002 * 119.99788 * 359.97438 * 16 15 14 18 18 C 1.38811 * 119.99622 * 180.27609 * 16 15 14 19 19 N 1.31614 * 120.00467 * 359.72375 * 18 16 15 20 20 Si 1.86801 * 119.99700 * 179.72266 * 18 16 15 21 21 H 1.48501 * 109.46896 * 89.99850 * 20 18 16 22 22 H 1.48499 * 109.47039 * 210.00011 * 20 18 16 23 23 H 1.48501 * 109.47275 * 329.99811 * 20 18 16 24 24 C 1.47258 * 88.11250 * 26.48192 * 15 14 13 25 25 N 1.46040 * 106.82923 * 24.68543 * 13 12 10 26 26 C 1.37277 * 142.29804 * 163.78478 * 25 13 12 27 27 C 1.34522 * 106.92444 * 180.18874 * 26 25 13 28 28 N 1.33974 * 108.04964 * 359.95989 * 27 26 25 29 29 C 1.30856 * 109.35903 * 359.93618 * 28 27 26 30 30 H 1.08998 * 109.47345 * 205.67495 * 1 2 3 31 31 H 1.08998 * 109.47036 * 325.67760 * 1 2 3 32 32 H 1.09002 * 109.47178 * 85.67679 * 1 2 3 33 33 H 1.09004 * 117.49776 * 359.97438 * 4 2 1 34 34 H 1.09003 * 117.50119 * 214.97427 * 4 2 1 35 35 H 0.97001 * 120.00094 * 359.97438 * 9 7 5 36 36 H 1.09000 * 111.01924 * 336.50802 * 12 10 9 37 37 H 1.08995 * 111.02829 * 212.59887 * 12 10 9 38 38 H 1.09002 * 113.51216 * 103.80778 * 14 13 12 39 39 H 1.09000 * 113.51114 * 333.23619 * 14 13 12 40 40 H 0.96995 * 120.00147 * 180.02562 * 19 18 16 41 41 H 1.09000 * 113.51114 * 88.23382 * 24 15 14 42 42 H 1.09007 * 113.50716 * 218.80893 * 24 15 14 43 43 H 1.07995 * 126.53581 * 0.16765 * 26 25 13 44 44 H 1.08004 * 125.97143 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2369 -1.1209 0.7648 5 6 2.2365 -1.1208 -0.7652 6 1 1.6112 -1.8585 -1.2683 7 6 3.5290 -0.7807 -1.4614 8 8 3.9715 0.3469 -1.4015 9 7 4.1932 -1.7296 -2.1506 10 6 5.4500 -1.3990 -2.8268 11 1 6.0227 -0.6815 -2.2393 12 6 6.2825 -2.6793 -3.0781 13 6 5.8625 -3.0403 -4.5084 14 6 4.9424 -4.2478 -4.6472 15 7 5.6951 -4.6080 -5.8606 16 6 5.4339 -5.3052 -7.0100 17 1 4.4592 -5.7435 -7.1661 18 6 6.4239 -5.4538 -7.9716 19 7 7.6118 -4.9201 -7.7812 20 14 6.0701 -6.4114 -9.5360 21 1 5.5472 -5.4874 -10.5743 22 1 7.3220 -7.0451 -10.0223 23 1 5.0599 -7.4630 -9.2550 24 6 6.8533 -3.8963 -5.2946 25 7 5.4157 -1.8031 -5.1429 26 6 5.1459 -1.2471 -6.3686 27 6 4.7565 0.0211 -6.1462 28 7 4.7849 0.2383 -4.8245 29 6 5.1773 -0.8507 -4.2143 30 1 -0.3634 -0.9262 0.4452 31 1 -0.3633 0.8487 0.5794 32 1 -0.3634 0.0775 -1.0248 33 1 1.6119 -1.8583 1.2685 34 1 3.1721 -0.8749 1.2679 35 1 3.8394 -2.6316 -2.1982 36 1 6.0069 -3.4685 -2.3786 37 1 7.3505 -2.4679 -3.0258 38 1 3.9033 -3.9825 -4.8428 39 1 5.0489 -4.9709 -3.8387 40 1 8.3034 -5.0237 -8.4534 41 1 7.4828 -4.5233 -4.6632 42 1 7.4232 -3.3351 -6.0352 43 1 5.2306 -1.7347 -7.3285 44 1 4.4706 0.7387 -6.9011 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092389381.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:15:51 Heat of formation + Delta-G solvation = 128.878173 kcal Electronic energy + Delta-G solvation = -26786.508414 eV Core-core repulsion = 23129.355590 eV Total energy + Delta-G solvation = -3657.152824 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.164 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -42.21612 -39.92686 -38.62374 -37.07547 -35.45989 -33.21083 -31.83614 -30.66077 -28.94498 -28.32155 -27.35550 -25.21779 -25.04532 -23.59215 -21.82758 -21.33408 -21.12676 -20.10838 -19.83090 -18.68887 -17.54409 -16.97376 -16.57224 -15.52829 -15.11313 -15.05573 -14.69397 -14.46548 -14.19248 -14.10987 -13.93512 -13.48851 -13.38506 -13.35790 -13.06066 -12.90516 -12.36908 -12.29505 -12.21300 -11.99044 -11.68496 -11.61872 -11.37409 -10.99403 -10.75225 -10.56613 -10.29559 -10.25581 -10.10678 -9.80912 -9.73321 -9.46450 -9.23976 -9.05618 -8.87647 -7.90782 -7.17062 -5.98198 -3.33064 2.36864 2.54251 3.06524 3.24428 3.28018 3.32640 3.34558 3.61470 3.73716 4.08731 4.26992 4.46397 4.54249 4.56880 4.61262 4.69969 4.84624 5.00796 5.05586 5.10313 5.32014 5.40500 5.47199 5.47481 5.53154 5.58831 5.69791 5.76042 5.78698 5.79992 5.83151 5.99550 6.08337 6.10938 6.19269 6.22637 6.40236 6.71250 6.88087 6.97355 7.23515 7.33334 7.45551 7.64761 7.73472 8.25179 8.62681 8.80691 9.47861 10.33182 11.18822 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.020451 B = 0.003346 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.791793 B = 8365.657049 C = 8674.072720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.122 4.122 3 H 0.118 0.882 4 C -0.149 4.149 5 C -0.190 4.190 6 H 0.122 0.878 7 C 0.546 3.454 8 O -0.524 6.524 9 N -0.714 5.714 10 C 0.232 3.768 11 H 0.112 0.888 12 C -0.116 4.116 13 C 0.093 3.907 14 C 0.119 3.881 15 N -0.602 5.602 16 C -0.226 4.226 17 H 0.083 0.917 18 C -0.002 4.002 19 N -0.918 5.918 20 Si 0.915 3.085 21 H -0.286 1.286 22 H -0.289 1.289 23 H -0.280 1.280 24 C 0.160 3.840 25 N -0.426 5.426 26 C 0.008 3.992 27 C -0.050 4.050 28 N -0.465 5.465 29 C 0.152 3.848 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.402 0.598 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.046 0.954 39 H 0.053 0.947 40 H 0.257 0.743 41 H 0.048 0.952 42 H 0.081 0.919 43 H 0.172 0.828 44 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.130 4.366 15.305 17.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.140 4.140 3 H 0.136 0.864 4 C -0.186 4.186 5 C -0.211 4.211 6 H 0.140 0.860 7 C 0.332 3.668 8 O -0.399 6.399 9 N -0.366 5.366 10 C 0.125 3.875 11 H 0.130 0.870 12 C -0.156 4.156 13 C 0.006 3.994 14 C -0.008 4.008 15 N -0.328 5.328 16 C -0.352 4.352 17 H 0.101 0.899 18 C -0.199 4.199 19 N -0.563 5.563 20 Si 0.745 3.255 21 H -0.213 1.213 22 H -0.215 1.215 23 H -0.206 1.206 24 C 0.033 3.967 25 N -0.107 5.107 26 C -0.126 4.126 27 C -0.198 4.198 28 N -0.184 5.184 29 C -0.112 4.112 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.237 0.763 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.099 0.901 43 H 0.189 0.811 44 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -7.873 5.555 15.251 18.039 hybrid contribution -0.053 -1.950 -1.742 2.615 sum -7.926 3.605 13.508 16.072 Atomic orbital electron populations 1.21402 0.92310 1.02089 1.02296 1.22374 0.95190 0.95181 1.01285 0.86424 1.23102 1.03138 1.01583 0.90825 1.22295 0.97802 1.05410 0.95605 0.85993 1.19631 0.84476 0.84654 0.78015 1.90730 1.67852 1.20474 1.60882 1.45913 1.24525 1.13610 1.52597 1.19679 0.85125 0.96236 0.86436 0.87031 1.22739 1.01334 0.96407 0.95106 1.22524 1.01315 0.84173 0.91379 1.22646 0.95815 0.91024 0.91348 1.45600 1.09161 1.63745 1.14263 1.18892 0.97539 1.27193 0.91608 0.89937 1.24803 0.95567 1.00670 0.98861 1.69789 1.03185 1.48130 1.35238 0.86080 0.77138 0.79445 0.82843 1.21289 1.21459 1.20560 1.22313 0.90722 0.90202 0.93422 1.45667 1.47182 1.11345 1.06499 1.22520 1.06245 0.94706 0.89171 1.22195 1.09637 0.95277 0.92703 1.69779 1.18646 1.24484 1.05536 1.24414 1.07034 0.86884 0.92826 0.92403 0.91715 0.91884 0.87861 0.88238 0.76311 0.87636 0.87714 0.93543 0.92927 0.93317 0.93478 0.90081 0.81109 0.81402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 10.19 37.16 0.38 -0.55 16 2 C -0.12 -1.16 5.92 -90.62 -0.54 -1.70 16 3 H 0.12 1.34 7.67 -51.93 -0.40 0.94 16 4 C -0.15 -1.20 9.88 -26.73 -0.26 -1.46 16 5 C -0.19 -1.91 5.91 -91.78 -0.54 -2.46 16 6 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 7 C 0.55 7.43 7.60 -10.99 -0.08 7.35 16 8 O -0.52 -9.25 15.97 5.56 0.09 -9.16 16 9 N -0.71 -8.82 5.13 -53.56 -0.27 -9.09 16 10 C 0.23 3.31 3.23 -67.68 -0.22 3.10 16 11 H 0.11 1.62 7.67 -51.93 -0.40 1.23 16 12 C -0.12 -1.45 6.15 -25.60 -0.16 -1.61 16 13 C 0.09 1.58 1.64 -133.40 -0.22 1.36 16 14 C 0.12 2.15 8.18 -7.92 -0.06 2.08 16 15 N -0.60 -14.08 3.79 -184.71 -0.70 -14.78 16 16 C -0.23 -5.93 10.74 -15.06 -0.16 -6.09 16 17 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 18 C 0.00 -0.04 5.50 -17.43 -0.10 -0.14 16 19 N -0.92 -25.71 11.51 55.49 0.64 -25.07 16 20 Si 0.92 21.18 29.55 -169.99 -5.02 16.16 16 21 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 C 0.16 3.38 6.94 -7.78 -0.05 3.33 16 25 N -0.43 -8.04 3.42 -100.94 -0.34 -8.39 16 26 C 0.01 0.16 12.03 -16.43 -0.20 -0.04 16 27 C -0.05 -0.94 11.86 -17.93 -0.21 -1.15 16 28 N -0.47 -9.48 11.25 -10.48 -0.12 -9.60 16 29 C 0.15 2.79 8.22 -154.56 -1.27 1.52 16 30 H 0.06 0.36 7.90 -51.93 -0.41 -0.05 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.10 0.62 8.05 -51.93 -0.42 0.21 16 34 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.40 3.99 8.57 -40.82 -0.35 3.64 16 36 H 0.11 1.00 7.75 -51.93 -0.40 0.59 16 37 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.05 0.83 7.98 -51.93 -0.41 0.41 16 40 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.08 2.00 7.16 -51.93 -0.37 1.63 16 43 H 0.17 3.47 8.06 -52.49 -0.42 3.05 16 44 H 0.17 2.64 8.06 -52.48 -0.42 2.22 16 LS Contribution 367.92 15.07 5.54 5.54 Total: -1.00 -33.83 367.92 -10.40 -44.23 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -6.51 Total: 6.60 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: -3.70 Total: 3.56 kcal Atomic # 7 Polarization: -66.13 SS G_CDS: -0.80 Total: -66.93 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.09 Total: -9.16 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.83 -10.40 -44.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092389381.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.110 kcal (2) G-P(sol) polarization free energy of solvation -33.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds