Wall clock time and date at job start Fri Apr 10 2020 18:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21320 * 119.99762 * 2 1 4 4 C 1.46616 * 120.00000 * 179.97438 * 2 1 3 5 5 C 1.38613 * 126.51603 * 273.46073 * 4 2 1 6 6 C 1.50703 * 125.82932 * 359.71492 * 5 4 2 7 7 N 1.34112 * 108.34892 * 179.97438 * 5 4 2 8 8 H 0.96998 * 125.34817 * 180.02562 * 7 5 4 9 9 C 1.37842 * 109.30368 * 359.97438 * 7 5 4 10 10 C 1.46845 * 125.80274 * 180.02562 * 9 7 5 11 11 O 1.21673 * 120.00240 * 172.67505 * 10 9 7 12 12 N 1.34780 * 119.99593 * 352.68050 * 10 9 7 13 13 C 1.46496 * 120.00076 * 354.92756 * 12 10 9 14 14 C 1.50697 * 109.47225 * 87.77942 * 13 12 10 15 15 H 1.08007 * 119.99797 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00432 * 179.97438 * 14 13 12 17 17 N 1.31509 * 119.99975 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 119.99561 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47409 * 90.00102 * 18 16 14 20 20 H 1.48509 * 109.46801 * 209.99838 * 18 16 14 21 21 H 1.48503 * 109.47331 * 329.99765 * 18 16 14 22 22 C 1.46500 * 119.99524 * 174.93295 * 12 10 9 23 23 C 1.53003 * 109.47152 * 89.53828 * 22 12 10 24 24 C 1.47202 * 109.47183 * 179.97438 * 23 22 12 25 25 N 9.18224 * 148.94784 * 231.36011 * 4 1 2 26 26 C 1.36243 * 108.39593 * 0.02562 * 9 7 5 27 27 C 1.50703 * 126.50624 * 180.02562 * 26 9 7 28 28 H 1.08997 * 109.47292 * 274.85067 * 1 2 3 29 29 H 1.09005 * 109.47024 * 34.85595 * 1 2 3 30 30 H 1.09005 * 109.46851 * 154.85156 * 1 2 3 31 31 H 1.08999 * 109.47052 * 83.59240 * 6 5 4 32 32 H 1.08998 * 109.47141 * 203.59642 * 6 5 4 33 33 H 1.08998 * 109.46741 * 323.59344 * 6 5 4 34 34 H 1.09005 * 109.47306 * 207.77441 * 13 12 10 35 35 H 1.08998 * 109.47716 * 327.77844 * 13 12 10 36 36 H 0.96999 * 119.99935 * 180.02562 * 17 16 14 37 37 H 1.09004 * 109.46696 * 209.53669 * 22 12 10 38 38 H 1.08999 * 109.47340 * 329.53393 * 22 12 10 39 39 H 1.08999 * 109.46747 * 299.99405 * 23 22 12 40 40 H 1.08999 * 109.47353 * 59.99573 * 23 22 12 41 41 H 1.08997 * 109.46711 * 270.00183 * 27 26 9 42 42 H 1.08998 * 109.47152 * 30.00053 * 27 26 9 43 43 H 1.09000 * 109.47031 * 150.00177 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0507 0.0000 4 6 2.2401 -1.2697 0.0006 5 6 2.5942 -2.0172 1.1129 6 6 2.2959 -1.6610 2.5465 7 7 3.2527 -3.1086 0.6960 8 1 3.6121 -3.8014 1.2719 9 6 3.3376 -3.0917 -0.6797 10 6 3.9840 -4.1136 -1.5131 11 8 3.8831 -4.0636 -2.7246 12 7 4.6888 -5.1068 -0.9359 13 6 4.9039 -5.1060 0.5132 14 6 3.7537 -5.8038 1.1922 15 1 2.9432 -6.2072 0.6031 16 6 3.7359 -5.9274 2.5653 17 7 2.7318 -6.5359 3.1578 18 14 5.1372 -5.2291 3.5841 19 1 4.8278 -3.8248 3.9549 20 1 5.3057 -6.0408 4.8162 21 1 6.3923 -5.2665 2.7911 22 6 5.2400 -6.1871 -1.7577 23 6 6.6419 -5.8013 -2.2339 24 6 7.1959 -6.8870 -3.0591 25 7 7.6251 -7.7234 -3.6961 26 6 2.7199 -1.9659 -1.1349 27 6 2.5742 -1.5427 -2.5739 28 1 -0.3634 0.0869 1.0239 29 1 -0.3633 0.8433 -0.5874 30 1 -0.3633 -0.9303 -0.4367 31 1 1.2864 -1.9856 2.7990 32 1 3.0118 -2.1582 3.2010 33 1 2.3737 -0.5816 2.6764 34 1 5.8325 -5.6285 0.7431 35 1 4.9673 -4.0782 0.8707 36 1 2.7191 -6.6225 4.1238 37 1 5.2958 -7.1011 -1.1663 38 1 4.5955 -6.3518 -2.6211 39 1 6.5860 -4.8874 -2.8252 40 1 7.2864 -5.6366 -1.3704 41 1 3.4279 -0.9285 -2.8601 42 1 2.5330 -2.4267 -3.2102 43 1 1.6563 -0.9668 -2.6921 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058282943.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:10 Heat of formation + Delta-G solvation = 4.579528 kcal Electronic energy + Delta-G solvation = -27088.048808 eV Core-core repulsion = 23327.787327 eV Total energy + Delta-G solvation = -3760.261480 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.36771 -39.16539 -38.34420 -36.76714 -35.75251 -33.37501 -32.49059 -32.05691 -31.00710 -29.61161 -28.51107 -27.41349 -26.19873 -24.04759 -23.04443 -22.07327 -20.10867 -18.78519 -18.35182 -17.79863 -17.21846 -16.90572 -15.88006 -15.56705 -15.24459 -15.01885 -14.82853 -14.53403 -14.39540 -14.17298 -13.93130 -13.39300 -13.22498 -13.10586 -12.95051 -12.72865 -12.62153 -12.50599 -12.35623 -12.21561 -12.00051 -11.96309 -11.90490 -11.80031 -11.61007 -11.40245 -11.13037 -11.02858 -10.80216 -10.63778 -10.07182 -9.63873 -9.38483 -9.20693 -8.36079 -8.18105 -7.59701 -6.67497 -4.75820 1.98478 2.12537 2.70334 2.76735 2.79888 2.85260 2.92120 2.95995 3.38889 3.71252 3.81533 3.87487 4.22976 4.51248 4.59639 5.00865 5.08338 5.17119 5.26161 5.30435 5.39253 5.47850 5.52415 5.57435 5.69266 5.70442 5.80832 5.88137 5.92256 6.04442 6.07260 6.10059 6.12812 6.19537 6.21846 6.39848 6.67237 6.84302 6.92494 7.11165 7.34356 7.60797 7.71077 7.72858 7.96565 8.03992 8.43904 8.61708 8.84648 10.42728 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010065 B = 0.005704 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2781.180643 B = 4908.044636 C = 7080.460269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.445 3.555 3 O -0.465 6.465 4 C -0.275 4.275 5 C 0.086 3.914 6 C -0.096 4.096 7 N -0.499 5.499 8 H 0.442 0.558 9 C -0.045 4.045 10 C 0.595 3.405 11 O -0.547 6.547 12 N -0.593 5.593 13 C 0.188 3.812 14 C -0.567 4.567 15 H 0.090 0.910 16 C 0.081 3.919 17 N -0.862 5.862 18 Si 0.847 3.153 19 H -0.266 1.266 20 H -0.271 1.271 21 H -0.256 1.256 22 C 0.129 3.871 23 C -0.047 4.047 24 C 0.220 3.780 25 N -0.446 5.446 26 C -0.053 4.053 27 C -0.089 4.089 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.049 0.951 35 H 0.029 0.971 36 H 0.275 0.725 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.063 0.937 42 H 0.087 0.913 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.613 8.356 -1.126 8.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.320 3.680 3 O -0.338 6.338 4 C -0.283 4.283 5 C -0.040 4.040 6 C -0.153 4.153 7 N -0.107 5.107 8 H 0.301 0.699 9 C -0.158 4.158 10 C 0.386 3.614 11 O -0.426 6.426 12 N -0.323 5.323 13 C 0.066 3.934 14 C -0.606 4.606 15 H 0.108 0.892 16 C -0.127 4.127 17 N -0.496 5.496 18 Si 0.672 3.328 19 H -0.191 1.191 20 H -0.195 1.195 21 H -0.180 1.180 22 C 0.004 3.996 23 C -0.089 4.089 24 C -0.098 4.098 25 N -0.123 5.123 26 C -0.060 4.060 27 C -0.146 4.146 28 H 0.112 0.888 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.067 0.933 35 H 0.046 0.954 36 H 0.085 0.915 37 H 0.110 0.890 38 H 0.106 0.894 39 H 0.131 0.869 40 H 0.127 0.873 41 H 0.082 0.918 42 H 0.105 0.895 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.343 7.371 -2.405 7.761 hybrid contribution 0.569 0.040 1.524 1.628 sum 0.913 7.411 -0.881 7.519 Atomic orbital electron populations 1.22261 0.94323 1.04593 1.04327 1.21681 0.90920 0.86734 0.68618 1.90511 1.72687 1.34736 1.35915 1.19668 1.14652 1.00829 0.93154 1.20654 0.98963 0.89176 0.95162 1.20479 1.03152 1.02272 0.89442 1.43824 1.40227 1.19201 1.07442 0.69882 1.19569 1.13087 1.00331 0.82854 1.17091 0.77569 0.80184 0.86581 1.90718 1.62841 1.75896 1.13187 1.47693 1.52437 1.23444 1.08753 1.20223 0.99004 0.97269 0.76893 1.21515 1.07042 1.39558 0.92440 0.89170 1.24990 0.95525 0.94584 0.97619 1.69853 1.29753 1.39110 1.10907 0.87280 0.83664 0.80243 0.81650 1.19090 1.19542 1.17960 1.21171 0.91393 0.90574 0.96436 1.19788 0.98019 0.93039 0.98006 1.29019 0.93220 0.94124 0.93469 1.81173 1.09594 1.11004 1.10571 1.19357 0.99095 0.92965 0.94626 1.20347 1.00752 1.02213 0.91281 0.88794 0.89934 0.89490 0.89869 0.90992 0.90327 0.93310 0.95380 0.91496 0.88981 0.89377 0.86898 0.87284 0.91834 0.89451 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.12 10.25 36.00 0.37 -1.75 16 2 C 0.44 6.63 6.55 -30.93 -0.20 6.43 16 3 O -0.46 -8.14 17.86 5.52 0.10 -8.04 16 4 C -0.28 -4.62 5.77 -105.11 -0.61 -5.23 16 5 C 0.09 1.46 7.22 -81.46 -0.59 0.87 16 6 C -0.10 -1.33 10.19 36.01 0.37 -0.96 16 7 N -0.50 -9.39 4.73 -5.55 -0.03 -9.42 16 8 H 0.44 8.67 2.81 -40.82 -0.11 8.56 16 9 C -0.05 -0.86 6.57 -82.40 -0.54 -1.40 16 10 C 0.60 11.21 7.62 -12.78 -0.10 11.11 16 11 O -0.55 -10.64 14.30 5.21 0.07 -10.56 16 12 N -0.59 -10.32 2.46 -176.54 -0.43 -10.76 16 13 C 0.19 3.51 3.76 -5.20 -0.02 3.49 16 14 C -0.57 -12.64 7.94 -34.44 -0.27 -12.92 16 15 H 0.09 2.33 8.06 -52.48 -0.42 1.91 16 16 C 0.08 1.85 5.18 -17.82 -0.09 1.76 16 17 N -0.86 -21.61 13.96 55.43 0.77 -20.84 16 18 Si 0.85 16.46 27.07 -169.99 -4.60 11.86 16 19 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 20 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 21 H -0.26 -4.67 6.54 56.52 0.37 -4.30 16 22 C 0.13 1.87 5.31 -4.04 -0.02 1.85 16 23 C -0.05 -0.55 6.03 -29.52 -0.18 -0.73 16 24 C 0.22 2.93 15.43 -20.78 -0.32 2.61 16 25 N -0.45 -7.04 18.53 42.13 0.78 -6.26 16 26 C -0.05 -0.93 6.21 -104.07 -0.65 -1.58 16 27 C -0.09 -1.38 9.72 36.01 0.35 -1.03 16 28 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.09 0.89 8.08 -51.93 -0.42 0.47 16 31 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 34 H 0.05 0.85 7.11 -51.93 -0.37 0.48 16 35 H 0.03 0.53 4.64 -51.93 -0.24 0.29 16 36 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 37 H 0.09 1.30 8.07 -51.93 -0.42 0.88 16 38 H 0.09 1.31 7.51 -51.93 -0.39 0.92 16 39 H 0.11 1.28 8.14 -51.93 -0.42 0.85 16 40 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.09 1.42 6.28 -51.93 -0.33 1.10 16 43 H 0.05 0.73 8.05 -51.93 -0.42 0.31 16 LS Contribution 367.42 15.07 5.54 5.54 Total: -1.00 -28.24 367.42 -5.97 -34.21 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -5.67 Total: 11.74 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -2.50 Total: 2.54 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: 1.09 Total: -47.28 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: 0.17 Total: -18.60 kcal Atomic # 14 Polarization: 16.46 SS G_CDS: -4.60 Total: 11.86 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.24 -5.97 -34.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058282943.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.787 kcal (2) G-P(sol) polarization free energy of solvation -28.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds