Wall clock time and date at job start Fri Apr 10 2020 18:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21320 * 119.99762 * 2 1 4 4 C 1.46616 * 120.00000 * 179.97438 * 2 1 3 5 5 C 1.38613 * 126.51603 * 273.46073 * 4 2 1 6 6 C 1.50703 * 125.82932 * 359.71492 * 5 4 2 7 7 N 1.34112 * 108.34892 * 179.97438 * 5 4 2 8 8 H 0.96998 * 125.34817 * 180.02562 * 7 5 4 9 9 C 1.37842 * 109.30368 * 359.97438 * 7 5 4 10 10 C 1.46845 * 125.80274 * 180.02562 * 9 7 5 11 11 O 1.21673 * 120.00240 * 172.67505 * 10 9 7 12 12 N 1.34780 * 119.99593 * 352.68050 * 10 9 7 13 13 C 1.46496 * 120.00076 * 354.92756 * 12 10 9 14 14 C 1.50697 * 109.47225 * 87.77942 * 13 12 10 15 15 H 1.08007 * 119.99797 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00432 * 179.97438 * 14 13 12 17 17 N 1.31509 * 119.99975 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 119.99561 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47409 * 90.00102 * 18 16 14 20 20 H 1.48509 * 109.46801 * 209.99838 * 18 16 14 21 21 H 1.48503 * 109.47331 * 329.99765 * 18 16 14 22 22 C 1.46500 * 119.99524 * 174.93295 * 12 10 9 23 23 C 1.53003 * 109.47152 * 89.53828 * 22 12 10 24 24 C 1.47202 * 109.47183 * 179.97438 * 23 22 12 25 25 N 9.18224 * 148.94784 * 231.36011 * 4 1 2 26 26 C 1.36243 * 108.39593 * 0.02562 * 9 7 5 27 27 C 1.50703 * 126.50624 * 180.02562 * 26 9 7 28 28 H 1.08997 * 109.47292 * 274.85067 * 1 2 3 29 29 H 1.09005 * 109.47024 * 34.85595 * 1 2 3 30 30 H 1.09005 * 109.46851 * 154.85156 * 1 2 3 31 31 H 1.08999 * 109.47052 * 83.59240 * 6 5 4 32 32 H 1.08998 * 109.47141 * 203.59642 * 6 5 4 33 33 H 1.08998 * 109.46741 * 323.59344 * 6 5 4 34 34 H 1.09005 * 109.47306 * 207.77441 * 13 12 10 35 35 H 1.08998 * 109.47716 * 327.77844 * 13 12 10 36 36 H 0.96999 * 119.99935 * 180.02562 * 17 16 14 37 37 H 1.09004 * 109.46696 * 209.53669 * 22 12 10 38 38 H 1.08999 * 109.47340 * 329.53393 * 22 12 10 39 39 H 1.08999 * 109.46747 * 299.99405 * 23 22 12 40 40 H 1.08999 * 109.47353 * 59.99573 * 23 22 12 41 41 H 1.08997 * 109.46711 * 270.00183 * 27 26 9 42 42 H 1.08998 * 109.47152 * 30.00053 * 27 26 9 43 43 H 1.09000 * 109.47031 * 150.00177 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0507 0.0000 4 6 2.2401 -1.2697 0.0006 5 6 2.5942 -2.0172 1.1129 6 6 2.2959 -1.6610 2.5465 7 7 3.2527 -3.1086 0.6960 8 1 3.6121 -3.8014 1.2719 9 6 3.3376 -3.0917 -0.6797 10 6 3.9840 -4.1136 -1.5131 11 8 3.8831 -4.0636 -2.7246 12 7 4.6888 -5.1068 -0.9359 13 6 4.9039 -5.1060 0.5132 14 6 3.7537 -5.8038 1.1922 15 1 2.9432 -6.2072 0.6031 16 6 3.7359 -5.9274 2.5653 17 7 2.7318 -6.5359 3.1578 18 14 5.1372 -5.2291 3.5841 19 1 4.8278 -3.8248 3.9549 20 1 5.3057 -6.0408 4.8162 21 1 6.3923 -5.2665 2.7911 22 6 5.2400 -6.1871 -1.7577 23 6 6.6419 -5.8013 -2.2339 24 6 7.1959 -6.8870 -3.0591 25 7 7.6251 -7.7234 -3.6961 26 6 2.7199 -1.9659 -1.1349 27 6 2.5742 -1.5427 -2.5739 28 1 -0.3634 0.0869 1.0239 29 1 -0.3633 0.8433 -0.5874 30 1 -0.3633 -0.9303 -0.4367 31 1 1.2864 -1.9856 2.7990 32 1 3.0118 -2.1582 3.2010 33 1 2.3737 -0.5816 2.6764 34 1 5.8325 -5.6285 0.7431 35 1 4.9673 -4.0782 0.8707 36 1 2.7191 -6.6225 4.1238 37 1 5.2958 -7.1011 -1.1663 38 1 4.5955 -6.3518 -2.6211 39 1 6.5860 -4.8874 -2.8252 40 1 7.2864 -5.6366 -1.3704 41 1 3.4279 -0.9285 -2.8601 42 1 2.5330 -2.4267 -3.2102 43 1 1.6563 -0.9668 -2.6921 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058282943.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:09 Heat of formation + Delta-G solvation = -10.646942 kcal Electronic energy + Delta-G solvation = -27088.709077 eV Core-core repulsion = 23327.787327 eV Total energy + Delta-G solvation = -3760.921750 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.72088 -40.50533 -39.61125 -37.97647 -37.16563 -34.95432 -33.82875 -33.36690 -32.20493 -30.64260 -30.06352 -28.62598 -27.50129 -25.31976 -24.62149 -23.30482 -21.43700 -20.16119 -19.62777 -19.31653 -18.51702 -18.29073 -17.24233 -16.90740 -16.55231 -16.32425 -16.09314 -15.77335 -15.66696 -15.41387 -15.16055 -14.75746 -14.57329 -14.42791 -14.36125 -13.93015 -13.84392 -13.67615 -13.57765 -13.33483 -13.20625 -13.16048 -13.01856 -12.91538 -12.90459 -12.78481 -12.49387 -12.37737 -12.14954 -11.89536 -11.80101 -10.98265 -10.90448 -10.69846 -9.76415 -9.56553 -8.94449 -8.43467 -6.56108 0.58137 0.96433 1.29053 1.37234 1.42120 1.43107 1.62669 1.77659 2.07119 2.19647 2.34277 2.48677 2.88394 3.12914 3.37543 3.73485 3.86580 4.06710 4.11918 4.20265 4.24973 4.37343 4.45207 4.51810 4.53102 4.66066 4.68063 4.69796 4.80292 4.84944 4.87876 4.92093 4.97771 4.99804 5.15514 5.20476 5.21277 5.39878 5.51876 5.80595 5.98780 6.04706 6.42816 6.53781 6.57090 6.58893 6.64531 7.06047 7.20268 8.70563 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010065 B = 0.005704 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2781.180643 B = 4908.044636 C = 7080.460269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.449 3.551 3 O -0.495 6.495 4 C -0.283 4.283 5 C 0.080 3.920 6 C -0.097 4.097 7 N -0.513 5.513 8 H 0.438 0.562 9 C -0.075 4.075 10 C 0.590 3.410 11 O -0.560 6.560 12 N -0.592 5.592 13 C 0.193 3.807 14 C -0.559 4.559 15 H 0.042 0.958 16 C 0.039 3.961 17 N -0.914 5.914 18 Si 0.899 3.101 19 H -0.250 1.250 20 H -0.279 1.279 21 H -0.230 1.230 22 C 0.125 3.875 23 C -0.032 4.032 24 C 0.245 3.755 25 N -0.489 5.489 26 C -0.060 4.060 27 C -0.084 4.084 28 H 0.118 0.882 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.037 0.963 36 H 0.275 0.725 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.122 0.878 40 H 0.137 0.863 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.093 10.158 -0.476 10.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.327 3.673 3 O -0.371 6.371 4 C -0.291 4.291 5 C -0.045 4.045 6 C -0.154 4.154 7 N -0.120 5.120 8 H 0.295 0.705 9 C -0.188 4.188 10 C 0.381 3.619 11 O -0.441 6.441 12 N -0.322 5.322 13 C 0.071 3.929 14 C -0.598 4.598 15 H 0.060 0.940 16 C -0.165 4.165 17 N -0.550 5.550 18 Si 0.719 3.281 19 H -0.174 1.174 20 H -0.204 1.204 21 H -0.152 1.152 22 C 0.001 3.999 23 C -0.073 4.073 24 C -0.073 4.073 25 N -0.167 5.167 26 C -0.068 4.068 27 C -0.141 4.141 28 H 0.136 0.864 29 H 0.118 0.882 30 H 0.110 0.890 31 H 0.117 0.883 32 H 0.088 0.912 33 H 0.116 0.884 34 H 0.090 0.910 35 H 0.054 0.946 36 H 0.085 0.915 37 H 0.112 0.888 38 H 0.097 0.903 39 H 0.140 0.860 40 H 0.154 0.846 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.056 9.173 -1.791 9.406 hybrid contribution 0.235 -0.531 1.286 1.410 sum 1.291 8.643 -0.506 8.754 Atomic orbital electron populations 1.22267 0.90710 1.05621 1.06187 1.22096 0.92628 0.85292 0.67309 1.90508 1.73660 1.35281 1.37617 1.20030 1.14688 1.01604 0.92731 1.21265 0.97928 0.88478 0.96780 1.20623 1.03924 1.03529 0.87317 1.43795 1.41139 1.19747 1.07341 0.70515 1.19787 1.14545 1.01246 0.83191 1.17212 0.77655 0.80529 0.86544 1.90699 1.63416 1.76393 1.13568 1.47677 1.52334 1.23663 1.08482 1.20127 0.98209 0.97328 0.77256 1.21477 1.06897 1.39099 0.92319 0.94002 1.25671 0.97634 0.94610 0.98577 1.69994 1.32244 1.41512 1.11238 0.86444 0.81615 0.80097 0.79899 1.17424 1.20397 1.15223 1.21276 0.92845 0.89953 0.95863 1.19733 0.96368 0.92434 0.98772 1.29166 0.92096 0.93475 0.92513 1.81204 1.11105 1.12300 1.12063 1.19741 0.98420 0.92751 0.95882 1.20342 1.01954 1.01986 0.89860 0.86432 0.88224 0.89009 0.88315 0.91245 0.88398 0.91036 0.94589 0.91528 0.88772 0.90274 0.85995 0.84557 0.91344 0.90570 0.90767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.52 10.25 71.24 0.73 -2.79 16 2 C 0.45 12.45 6.55 27.87 0.18 12.64 16 3 O -0.49 -16.46 17.86 -3.15 -0.06 -16.52 16 4 C -0.28 -9.13 5.77 -20.18 -0.12 -9.25 16 5 C 0.08 2.64 7.22 42.30 0.31 2.95 16 6 C -0.10 -2.48 10.19 71.24 0.73 -1.75 16 7 N -0.51 -19.06 4.73 -171.47 -0.81 -19.87 16 8 H 0.44 16.93 2.81 -92.71 -0.26 16.67 16 9 C -0.08 -2.85 6.57 39.99 0.26 -2.59 16 10 C 0.59 22.15 7.62 86.49 0.66 22.81 16 11 O -0.56 -21.79 14.30 -4.26 -0.06 -21.85 16 12 N -0.59 -20.21 2.46 -830.68 -2.04 -22.26 16 13 C 0.19 6.97 3.76 85.63 0.32 7.29 16 14 C -0.56 -25.19 7.94 25.60 0.20 -24.98 16 15 H 0.04 2.26 8.06 -2.91 -0.02 2.24 16 16 C 0.04 1.77 5.18 84.66 0.44 2.21 16 17 N -0.91 -46.85 13.96 21.45 0.30 -46.55 16 18 Si 0.90 32.48 27.07 68.60 1.86 34.33 16 19 H -0.25 -8.38 7.11 99.48 0.71 -7.67 16 20 H -0.28 -10.43 7.11 99.48 0.71 -9.72 16 21 H -0.23 -7.30 6.54 99.48 0.65 -6.65 16 22 C 0.12 3.50 5.31 86.38 0.46 3.96 16 23 C -0.03 -0.68 6.03 28.79 0.17 -0.50 16 24 C 0.24 6.16 15.43 89.45 1.38 7.54 16 25 N -0.49 -15.05 18.53 20.00 0.37 -14.68 16 26 C -0.06 -2.09 6.21 -19.51 -0.12 -2.21 16 27 C -0.08 -2.54 9.72 71.24 0.69 -1.85 16 28 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 30 H 0.09 1.63 8.08 -2.38 -0.02 1.61 16 31 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.10 2.11 8.10 -2.39 -0.02 2.09 16 34 H 0.07 2.28 7.11 -2.38 -0.02 2.27 16 35 H 0.04 1.30 4.64 -2.39 -0.01 1.29 16 36 H 0.28 13.20 8.31 -92.71 -0.77 12.43 16 37 H 0.09 2.59 8.07 -2.39 -0.02 2.57 16 38 H 0.08 2.36 7.51 -2.39 -0.02 2.35 16 39 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.14 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.08 2.46 6.28 -2.39 -0.01 2.45 16 43 H 0.07 1.89 8.05 -2.39 -0.02 1.87 16 Total: -1.00 -62.96 367.42 6.59 -56.37 By element: Atomic # 1 Polarization: 36.80 SS G_CDS: 0.74 Total: 37.54 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: 6.30 Total: 13.48 kcal Atomic # 7 Polarization: -101.17 SS G_CDS: -2.18 Total: -103.35 kcal Atomic # 8 Polarization: -38.25 SS G_CDS: -0.12 Total: -38.37 kcal Atomic # 14 Polarization: 32.48 SS G_CDS: 1.86 Total: 34.33 kcal Total: -62.96 6.59 -56.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058282943.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.722 kcal (2) G-P(sol) polarization free energy of solvation -62.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds