Wall clock time and date at job start Fri Apr 10 2020 18:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86799 * 119.99992 * 2 1 4 4 H 1.48498 * 109.47320 * 270.00106 * 3 2 1 5 5 H 1.48502 * 109.47343 * 30.00179 * 3 2 1 6 6 H 1.48500 * 109.47317 * 150.00126 * 3 2 1 7 7 C 1.37883 * 120.00136 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99554 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99687 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.46890 * 180.02562 * 9 7 2 11 11 N 1.40065 * 125.87530 * 90.02279 * 10 9 7 12 12 C 1.30248 * 109.70055 * 179.97438 * 11 10 9 13 13 C 1.41170 * 108.46481 * 359.97438 * 12 11 10 14 14 C 1.36311 * 125.87496 * 270.02117 * 10 9 7 15 15 N 1.33202 * 134.61917 * 0.02562 * 14 10 9 16 16 C 1.31495 * 120.68362 * 179.97438 * 15 14 10 17 17 N 1.32124 * 122.65337 * 359.77283 * 16 15 14 18 18 C 1.32866 * 121.18601 * 0.47967 * 17 16 15 19 19 N 1.38105 * 120.80902 * 179.79984 * 18 17 16 20 20 C 1.46854 * 111.00139 * 235.50306 * 19 18 17 21 21 C 1.53029 * 109.52631 * 185.84457 * 20 19 18 22 22 C 1.53126 * 109.27776 * 300.81940 * 21 20 19 23 23 C 1.53119 * 109.15915 * 57.65686 * 22 21 20 24 24 H 1.08994 * 109.53841 * 62.30718 * 23 22 21 25 25 C 1.53000 * 109.50137 * 182.40853 * 23 22 21 26 26 O 1.42903 * 109.46726 * 294.80040 * 25 23 22 27 27 C 1.46848 * 111.00515 * 359.71735 * 19 18 17 28 28 H 0.96999 * 120.00294 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47552 * 60.00533 * 9 7 2 30 30 H 1.08996 * 109.47142 * 299.99775 * 9 7 2 31 31 H 1.07998 * 125.76800 * 180.02562 * 12 11 10 32 32 H 1.08006 * 118.67557 * 179.97438 * 16 15 14 33 33 H 1.09002 * 109.45859 * 305.86284 * 20 19 18 34 34 H 1.08997 * 109.45689 * 65.83167 * 20 19 18 35 35 H 1.09001 * 109.50823 * 60.76251 * 21 20 19 36 36 H 1.09000 * 109.50263 * 180.84341 * 21 20 19 37 37 H 1.09005 * 109.52192 * 297.75275 * 22 21 20 38 38 H 1.08999 * 109.52329 * 177.56336 * 22 21 20 39 39 H 1.09002 * 109.47398 * 54.80284 * 25 23 22 40 40 H 1.09001 * 109.47194 * 174.80465 * 25 23 22 41 41 H 0.96700 * 113.99509 * 180.02562 * 26 25 23 42 42 H 1.08995 * 109.46182 * 54.14136 * 27 19 18 43 43 H 1.09000 * 109.45649 * 294.17329 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 7 2.7360 -4.2368 1.1344 12 6 3.5486 -5.1878 0.7716 13 6 3.5850 -5.2310 -0.6390 14 6 2.7224 -4.2195 -1.1051 15 7 2.5801 -4.0517 -2.4188 16 6 3.2334 -4.8148 -3.2674 17 7 4.0570 -5.7716 -2.8776 18 6 4.2620 -6.0201 -1.5886 19 7 5.1215 -7.0249 -1.1899 20 6 4.4429 -7.9757 -0.3000 21 6 5.4575 -8.9881 0.2361 22 6 6.1007 -9.7299 -0.9389 23 6 6.7589 -8.7130 -1.8755 24 1 7.5506 -8.1862 -1.3430 25 6 7.3522 -9.4406 -3.0836 26 8 8.4147 -10.2930 -2.6515 27 6 5.7065 -7.7085 -2.3505 28 1 -0.4850 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5570 0.8897 31 1 4.1006 -5.8347 1.4373 32 1 3.0935 -4.6507 -4.3257 33 1 3.9934 -7.4357 0.5334 34 1 3.6649 -8.5002 -0.8547 35 1 6.2284 -8.4657 0.8025 36 1 4.9506 -9.7026 0.8847 37 1 5.3355 -10.2840 -1.4827 38 1 6.8552 -10.4215 -0.5640 39 1 6.5781 -10.0395 -3.5633 40 1 7.7388 -8.7099 -3.7940 41 1 8.8386 -10.7866 -3.3668 42 1 6.1748 -6.9745 -3.0062 43 1 4.9224 -8.2342 -2.8954 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065520588.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:19 Heat of formation + Delta-G solvation = 68.967954 kcal Electronic energy + Delta-G solvation = -26446.468680 eV Core-core repulsion = 22721.292042 eV Total energy + Delta-G solvation = -3725.176637 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.69460 -39.78577 -38.26756 -37.05780 -34.60115 -33.66347 -32.19829 -31.87953 -31.16355 -29.63680 -27.37488 -26.12107 -25.18230 -23.90735 -23.21431 -22.21419 -21.93166 -20.12029 -19.97792 -17.86668 -17.49512 -17.35464 -16.72172 -16.40854 -15.56619 -15.35526 -14.96145 -14.84619 -14.68890 -14.54099 -14.21791 -13.96665 -13.64290 -13.32335 -13.05721 -13.00328 -12.78080 -12.20700 -12.14873 -11.72708 -11.34774 -11.27450 -11.15334 -11.04428 -10.85760 -10.82371 -10.67242 -10.61587 -10.30385 -10.24375 -10.18151 -9.82012 -9.30395 -8.83619 -8.62419 -8.35992 -7.89170 -6.24607 -4.31306 1.01415 1.73398 2.86871 2.96597 3.23545 3.24239 3.29074 3.34867 3.93513 4.20400 4.30908 4.36986 4.45423 4.57549 4.64338 4.67195 4.89957 4.95493 5.00210 5.11045 5.13021 5.14589 5.18224 5.19530 5.39047 5.45263 5.46719 5.58308 5.60365 5.70624 5.77598 5.86480 6.01633 6.12391 6.27728 6.46237 6.61409 6.98091 7.03079 7.08315 7.26512 7.29546 7.62120 7.77804 7.87426 8.11977 8.60680 8.72765 9.34016 10.83665 Molecular weight = 317.16amu Principal moments of inertia in cm(-1) A = 0.025848 B = 0.002922 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.999156 B = 9579.520042 C = 9917.442950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.067 3.933 3 Si 0.908 3.092 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.062 0.938 9 C 0.263 3.737 10 N -0.331 5.331 11 N -0.235 5.235 12 C 0.069 3.931 13 C -0.298 4.298 14 C 0.352 3.648 15 N -0.534 5.534 16 C 0.350 3.650 17 N -0.599 5.599 18 C 0.433 3.567 19 N -0.467 5.467 20 C 0.056 3.944 21 C -0.119 4.119 22 C -0.113 4.113 23 C -0.090 4.090 24 H 0.087 0.913 25 C 0.083 3.917 26 O -0.572 6.572 27 C 0.074 3.926 28 H 0.268 0.732 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.189 0.811 32 H 0.197 0.803 33 H 0.092 0.908 34 H 0.049 0.951 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.059 0.941 38 H 0.073 0.927 39 H 0.046 0.954 40 H 0.049 0.951 41 H 0.379 0.621 42 H 0.091 0.909 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.791 -21.145 -5.157 24.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.136 4.136 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.574 4.574 8 H 0.080 0.920 9 C 0.147 3.853 10 N -0.118 5.118 11 N -0.050 5.050 12 C -0.126 4.126 13 C -0.314 4.314 14 C 0.103 3.897 15 N -0.256 5.256 16 C 0.056 3.944 17 N -0.325 5.325 18 C 0.183 3.817 19 N -0.184 5.184 20 C -0.070 4.070 21 C -0.156 4.156 22 C -0.151 4.151 23 C -0.109 4.109 24 H 0.106 0.894 25 C 0.005 3.995 26 O -0.378 6.378 27 C -0.052 4.052 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.205 0.795 32 H 0.213 0.787 33 H 0.110 0.890 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.225 0.775 42 H 0.109 0.891 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.961 -19.563 -4.130 22.802 hybrid contribution 0.509 0.125 -0.883 1.027 sum 11.469 -19.438 -5.013 23.120 Atomic orbital electron populations 1.69910 1.06019 1.27700 1.49238 1.24897 0.94989 0.99390 0.94365 0.86335 0.79697 0.82128 0.78401 1.20260 1.20792 1.19721 1.21241 0.93575 0.89631 1.52909 0.92013 1.19825 0.85647 0.79813 1.00064 1.49527 1.35823 1.27723 0.98699 1.76980 1.11022 1.07689 1.09343 1.23565 0.98776 0.97781 0.92439 1.19668 1.10017 1.06177 0.95563 1.19026 0.91761 0.90352 0.88554 1.67519 1.28471 1.29430 1.00156 1.24509 0.85987 0.84623 0.99323 1.68322 1.24092 1.24456 1.15600 1.19391 0.84516 0.90051 0.87744 1.58457 1.29447 1.12057 1.18435 1.22411 0.95514 0.92783 0.96296 1.21655 0.98694 0.97289 0.98007 1.21606 0.99772 0.97510 0.96199 1.21228 0.97899 0.95694 0.96047 0.89436 1.22110 0.89038 0.92554 0.95834 1.86464 1.51274 1.61458 1.38565 1.21909 0.96602 0.96138 0.90589 0.92217 0.92243 0.92669 0.79453 0.78686 0.88954 0.93312 0.90498 0.90579 0.92239 0.90786 0.93560 0.93291 0.77470 0.89052 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.69 13.28 55.43 0.74 -24.95 16 2 C 0.07 1.88 5.46 -17.82 -0.10 1.79 16 3 Si 0.91 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.53 -15.27 9.39 -34.44 -0.32 -15.59 16 8 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 9 C 0.26 6.98 6.19 -5.20 -0.03 6.95 16 10 N -0.33 -7.89 3.63 -61.65 -0.22 -8.11 16 11 N -0.23 -5.01 12.45 30.80 0.38 -4.63 16 12 C 0.07 1.20 10.70 -17.11 -0.18 1.01 16 13 C -0.30 -5.48 5.73 -106.82 -0.61 -6.09 16 14 C 0.35 7.72 8.04 -156.23 -1.26 6.47 16 15 N -0.53 -11.15 10.47 -13.97 -0.15 -11.29 16 16 C 0.35 5.79 12.24 -92.13 -1.13 4.66 16 17 N -0.60 -9.46 8.84 -13.62 -0.12 -9.58 16 18 C 0.43 6.87 6.43 -154.85 -1.00 5.87 16 19 N -0.47 -5.83 4.68 -172.84 -0.81 -6.64 16 20 C 0.06 0.57 5.23 -3.83 -0.02 0.55 16 21 C -0.12 -0.95 6.09 -26.65 -0.16 -1.12 16 22 C -0.11 -0.92 5.16 -26.60 -0.14 -1.05 16 23 C -0.09 -0.79 2.59 -90.54 -0.23 -1.03 16 24 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 25 C 0.08 0.60 6.43 37.16 0.24 0.84 16 26 O -0.57 -4.34 13.25 -35.23 -0.47 -4.81 16 27 C 0.07 0.79 3.96 -3.83 -0.02 0.77 16 28 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.06 1.65 8.14 -51.93 -0.42 1.22 16 30 H 0.06 1.51 8.14 -51.93 -0.42 1.08 16 31 H 0.19 2.37 6.88 -52.49 -0.36 2.00 16 32 H 0.20 2.41 8.06 -52.48 -0.42 1.99 16 33 H 0.09 0.96 4.97 -51.93 -0.26 0.70 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.61 7.90 -51.93 -0.41 0.20 16 39 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.38 1.19 9.12 45.56 0.42 1.61 16 42 H 0.09 1.04 7.72 -51.93 -0.40 0.64 16 43 H 0.05 0.57 8.13 -51.93 -0.42 0.15 16 LS Contribution 353.27 15.07 5.32 5.32 Total: -1.00 -33.28 353.27 -10.51 -43.79 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -5.21 Total: 0.17 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: -4.96 Total: 4.04 kcal Atomic # 7 Polarization: -65.03 SS G_CDS: -0.18 Total: -65.21 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: -0.47 Total: -4.81 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.28 -10.51 -43.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065520588.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.756 kcal (2) G-P(sol) polarization free energy of solvation -33.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds