Wall clock time and date at job start Fri Apr 10 2020 18:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86799 * 119.99992 * 2 1 4 4 H 1.48498 * 109.47320 * 270.00106 * 3 2 1 5 5 H 1.48502 * 109.47343 * 30.00179 * 3 2 1 6 6 H 1.48500 * 109.47317 * 150.00126 * 3 2 1 7 7 C 1.37883 * 120.00136 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99554 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99687 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.46890 * 180.02562 * 9 7 2 11 11 N 1.40065 * 125.87530 * 90.02279 * 10 9 7 12 12 C 1.30248 * 109.70055 * 179.97438 * 11 10 9 13 13 C 1.41170 * 108.46481 * 359.97438 * 12 11 10 14 14 C 1.36311 * 125.87496 * 270.02117 * 10 9 7 15 15 N 1.33202 * 134.61917 * 0.02562 * 14 10 9 16 16 C 1.31495 * 120.68362 * 179.97438 * 15 14 10 17 17 N 1.32124 * 122.65337 * 359.77283 * 16 15 14 18 18 C 1.32866 * 121.18601 * 0.47967 * 17 16 15 19 19 N 1.38105 * 120.80902 * 179.79984 * 18 17 16 20 20 C 1.46854 * 111.00139 * 235.50306 * 19 18 17 21 21 C 1.53029 * 109.52631 * 185.84457 * 20 19 18 22 22 C 1.53126 * 109.27776 * 300.81940 * 21 20 19 23 23 C 1.53119 * 109.15915 * 57.65686 * 22 21 20 24 24 H 1.08994 * 109.53841 * 62.30718 * 23 22 21 25 25 C 1.53000 * 109.50137 * 182.40853 * 23 22 21 26 26 O 1.42903 * 109.46726 * 294.80040 * 25 23 22 27 27 C 1.46848 * 111.00515 * 359.71735 * 19 18 17 28 28 H 0.96999 * 120.00294 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47552 * 60.00533 * 9 7 2 30 30 H 1.08996 * 109.47142 * 299.99775 * 9 7 2 31 31 H 1.07998 * 125.76800 * 180.02562 * 12 11 10 32 32 H 1.08006 * 118.67557 * 179.97438 * 16 15 14 33 33 H 1.09002 * 109.45859 * 305.86284 * 20 19 18 34 34 H 1.08997 * 109.45689 * 65.83167 * 20 19 18 35 35 H 1.09001 * 109.50823 * 60.76251 * 21 20 19 36 36 H 1.09000 * 109.50263 * 180.84341 * 21 20 19 37 37 H 1.09005 * 109.52192 * 297.75275 * 22 21 20 38 38 H 1.08999 * 109.52329 * 177.56336 * 22 21 20 39 39 H 1.09002 * 109.47398 * 54.80284 * 25 23 22 40 40 H 1.09001 * 109.47194 * 174.80465 * 25 23 22 41 41 H 0.96700 * 113.99509 * 180.02562 * 26 25 23 42 42 H 1.08995 * 109.46182 * 54.14136 * 27 19 18 43 43 H 1.09000 * 109.45649 * 294.17329 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 7 2.7360 -4.2368 1.1344 12 6 3.5486 -5.1878 0.7716 13 6 3.5850 -5.2310 -0.6390 14 6 2.7224 -4.2195 -1.1051 15 7 2.5801 -4.0517 -2.4188 16 6 3.2334 -4.8148 -3.2674 17 7 4.0570 -5.7716 -2.8776 18 6 4.2620 -6.0201 -1.5886 19 7 5.1215 -7.0249 -1.1899 20 6 4.4429 -7.9757 -0.3000 21 6 5.4575 -8.9881 0.2361 22 6 6.1007 -9.7299 -0.9389 23 6 6.7589 -8.7130 -1.8755 24 1 7.5506 -8.1862 -1.3430 25 6 7.3522 -9.4406 -3.0836 26 8 8.4147 -10.2930 -2.6515 27 6 5.7065 -7.7085 -2.3505 28 1 -0.4850 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5570 0.8897 31 1 4.1006 -5.8347 1.4373 32 1 3.0935 -4.6507 -4.3257 33 1 3.9934 -7.4357 0.5334 34 1 3.6649 -8.5002 -0.8547 35 1 6.2284 -8.4657 0.8025 36 1 4.9506 -9.7026 0.8847 37 1 5.3355 -10.2840 -1.4827 38 1 6.8552 -10.4215 -0.5640 39 1 6.5781 -10.0395 -3.5633 40 1 7.7388 -8.7099 -3.7940 41 1 8.8386 -10.7866 -3.3668 42 1 6.1748 -6.9745 -3.0062 43 1 4.9224 -8.2342 -2.8954 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065520588.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:18 Heat of formation + Delta-G solvation = 45.877422 kcal Electronic energy + Delta-G solvation = -26447.469961 eV Core-core repulsion = 22721.292042 eV Total energy + Delta-G solvation = -3726.177918 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.159 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.10215 -40.84588 -39.52513 -37.75949 -35.92553 -35.34080 -33.55140 -33.22813 -32.29332 -30.98336 -29.25804 -26.91295 -26.31950 -25.43529 -24.77039 -23.49554 -22.78754 -21.54858 -20.75772 -19.13484 -18.85777 -18.76758 -18.11982 -17.76501 -16.79966 -16.67750 -16.20319 -15.93452 -15.76134 -15.58848 -15.47638 -15.00424 -14.94298 -14.63421 -14.36379 -13.97197 -13.87293 -13.65401 -13.49113 -13.10109 -12.86955 -12.78584 -12.54620 -12.41770 -12.33790 -12.05371 -11.84920 -11.69777 -11.59183 -11.43988 -11.30796 -10.78237 -10.77309 -10.59526 -10.24406 -9.84822 -9.35560 -8.38393 -6.55244 -0.32540 0.28402 1.27527 1.34454 1.34882 1.47301 1.50502 2.18116 2.29860 2.79626 2.91657 3.08088 3.25465 3.41477 3.60268 3.62669 3.81212 3.87792 3.96942 3.99597 4.22337 4.27105 4.34406 4.50757 4.51119 4.57116 4.66030 4.76076 4.77885 4.81289 4.88085 4.92447 5.01963 5.12623 5.20659 5.34157 5.41156 5.44259 5.48454 5.52541 5.74401 5.80994 5.90520 6.18189 6.49619 6.58934 6.96829 7.13926 7.23929 8.69551 Molecular weight = 317.16amu Principal moments of inertia in cm(-1) A = 0.025848 B = 0.002922 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.999156 B = 9579.520042 C = 9917.442950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.021 3.979 3 Si 0.975 3.025 4 H -0.269 1.269 5 H -0.268 1.268 6 H -0.273 1.273 7 C -0.554 4.554 8 H 0.045 0.955 9 C 0.284 3.716 10 N -0.364 5.364 11 N -0.277 5.277 12 C 0.101 3.899 13 C -0.309 4.309 14 C 0.328 3.672 15 N -0.582 5.582 16 C 0.361 3.639 17 N -0.594 5.594 18 C 0.445 3.555 19 N -0.465 5.465 20 C 0.053 3.947 21 C -0.112 4.112 22 C -0.110 4.110 23 C -0.086 4.086 24 H 0.074 0.926 25 C 0.085 3.915 26 O -0.589 6.589 27 C 0.077 3.923 28 H 0.275 0.725 29 H 0.035 0.965 30 H 0.034 0.966 31 H 0.236 0.764 32 H 0.235 0.765 33 H 0.092 0.908 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.397 0.603 42 H 0.082 0.918 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.846 -22.949 -5.685 27.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.180 4.180 3 Si 0.798 3.202 4 H -0.194 1.194 5 H -0.192 1.192 6 H -0.197 1.197 7 C -0.593 4.593 8 H 0.063 0.937 9 C 0.166 3.834 10 N -0.150 5.150 11 N -0.092 5.092 12 C -0.094 4.094 13 C -0.325 4.325 14 C 0.081 3.919 15 N -0.306 5.306 16 C 0.068 3.932 17 N -0.319 5.319 18 C 0.194 3.806 19 N -0.181 5.181 20 C -0.072 4.072 21 C -0.150 4.150 22 C -0.147 4.147 23 C -0.105 4.105 24 H 0.092 0.908 25 C 0.007 3.993 26 O -0.398 6.398 27 C -0.049 4.049 28 H 0.084 0.916 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.252 0.748 32 H 0.251 0.749 33 H 0.110 0.890 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.115 0.885 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.247 0.753 42 H 0.101 0.899 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 13.048 -21.430 -4.668 25.520 hybrid contribution 0.011 0.459 -0.814 0.934 sum 13.059 -20.971 -5.481 25.306 Atomic orbital electron populations 1.69999 1.07339 1.28972 1.49291 1.25779 0.95911 1.02810 0.93491 0.85314 0.78328 0.77807 0.78775 1.19423 1.19213 1.19735 1.21376 0.92862 0.91190 1.53825 0.93690 1.19167 0.85863 0.80700 0.97697 1.49166 1.37168 1.28464 1.00250 1.76932 1.13411 1.09765 1.09085 1.24316 0.96372 0.96012 0.92717 1.19802 1.10265 1.06111 0.96319 1.19412 0.92473 0.91192 0.88863 1.67546 1.30866 1.31843 1.00333 1.25336 0.84304 0.83170 1.00382 1.68495 1.23917 1.24115 1.15382 1.19666 0.83457 0.90223 0.87241 1.58497 1.28104 1.12229 1.19292 1.22567 0.96208 0.92650 0.95775 1.21657 0.98159 0.96981 0.98179 1.21586 0.99891 0.97237 0.96022 1.21165 0.96957 0.95465 0.96863 0.90793 1.22051 0.89426 0.92810 0.94991 1.86407 1.51474 1.61762 1.40134 1.21950 0.97013 0.96161 0.89767 0.91619 0.94735 0.94792 0.74813 0.74914 0.89018 0.92995 0.90586 0.88473 0.91531 0.90635 0.92340 0.92868 0.75281 0.89949 0.92301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.31 13.28 21.45 0.28 -54.02 16 2 C 0.02 1.21 5.46 84.66 0.46 1.67 16 3 Si 0.97 45.07 29.54 68.60 2.03 47.09 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 5 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 6 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 7 C -0.55 -33.05 9.39 25.60 0.24 -32.81 16 8 H 0.04 2.76 7.81 -2.91 -0.02 2.74 16 9 C 0.28 16.09 6.19 85.63 0.53 16.62 16 10 N -0.36 -18.19 3.63 -348.96 -1.27 -19.46 16 11 N -0.28 -12.14 12.45 -56.46 -0.70 -12.85 16 12 C 0.10 3.40 10.70 85.65 0.92 4.31 16 13 C -0.31 -11.21 5.73 -21.29 -0.12 -11.34 16 14 C 0.33 14.83 8.04 134.15 1.08 15.91 16 15 N -0.58 -24.84 10.47 -198.10 -2.07 -26.92 16 16 C 0.36 11.64 12.24 180.87 2.21 13.85 16 17 N -0.59 -17.81 8.84 -197.01 -1.74 -19.55 16 18 C 0.44 13.43 6.43 133.64 0.86 14.29 16 19 N -0.47 -10.52 4.68 -700.74 -3.28 -13.80 16 20 C 0.05 0.93 5.23 86.32 0.45 1.38 16 21 C -0.11 -1.43 6.09 30.65 0.19 -1.24 16 22 C -0.11 -1.43 5.16 30.68 0.16 -1.27 16 23 C -0.09 -1.29 2.59 -10.74 -0.03 -1.32 16 24 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 25 C 0.09 1.01 6.43 71.98 0.46 1.48 16 26 O -0.59 -7.39 13.25 -148.98 -1.97 -9.36 16 27 C 0.08 1.44 3.96 86.33 0.34 1.79 16 28 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 29 H 0.03 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.03 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.24 5.25 6.88 -2.91 -0.02 5.23 16 32 H 0.24 5.32 8.06 -2.91 -0.02 5.30 16 33 H 0.09 1.63 4.97 -2.39 -0.01 1.62 16 34 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.07 1.02 7.90 -2.39 -0.02 1.00 16 39 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.40 1.45 9.12 -74.06 -0.68 0.78 16 42 H 0.08 1.71 7.72 -2.39 -0.02 1.69 16 43 H 0.06 1.08 8.13 -2.39 -0.02 1.06 16 Total: -1.00 -75.30 353.27 -0.61 -75.91 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: 0.37 Total: 9.63 kcal Atomic # 6 Polarization: 15.58 SS G_CDS: 7.75 Total: 23.33 kcal Atomic # 7 Polarization: -137.82 SS G_CDS: -8.78 Total: -146.60 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -1.97 Total: -9.36 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -75.30 -0.61 -75.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065520588.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.787 kcal (2) G-P(sol) polarization free energy of solvation -75.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds