Wall clock time and date at job start Fri Apr 10 2020 18:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00066 * 2 1 4 4 H 1.48499 * 109.47189 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47427 * 300.00397 * 3 2 1 6 6 H 1.48505 * 109.47065 * 60.00500 * 3 2 1 7 7 C 1.38815 * 119.99811 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99855 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00174 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99940 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.46832 * 180.02562 * 10 9 7 12 12 C 1.31002 * 120.00222 * 127.09940 * 11 10 9 13 13 C 1.50706 * 119.99727 * 7.54708 * 12 11 10 14 14 N 1.46491 * 109.47255 * 127.11556 * 13 12 11 15 15 C 1.34777 * 119.99942 * 179.97438 * 14 13 12 16 16 O 1.21703 * 120.00109 * 0.02562 * 15 14 13 17 17 C 1.46604 * 119.99962 * 179.97438 * 15 14 13 18 18 C 1.38028 * 126.00921 * 180.02562 * 17 15 14 19 19 C 1.39394 * 107.43179 * 180.02562 * 18 17 15 20 20 C 1.37755 * 107.65084 * 0.02562 * 19 18 17 21 21 C 1.47920 * 125.81726 * 179.97438 * 20 19 18 22 22 N 1.34203 * 126.70056 * 179.71092 * 21 20 19 23 23 N 1.28979 * 107.25316 * 179.83608 * 22 21 20 24 24 N 1.28725 * 108.99252 * 0.43401 * 23 22 21 25 25 H 0.97001 * 125.31893 * 179.75936 * 24 23 22 26 26 N 1.28875 * 109.36397 * 359.72372 * 24 23 22 27 27 N 1.36382 * 108.36314 * 359.73233 * 20 19 18 28 28 H 0.97003 * 125.71907 * 180.28795 * 27 20 19 29 29 H 0.96999 * 119.99986 * 359.97438 * 1 2 3 30 30 H 0.97005 * 119.99880 * 0.02562 * 9 7 2 31 31 H 1.08994 * 109.46993 * 60.00469 * 10 9 7 32 32 H 1.08995 * 109.47251 * 299.99718 * 10 9 7 33 33 H 1.08001 * 120.00028 * 307.09390 * 11 10 9 34 34 H 1.07994 * 119.99999 * 187.26295 * 12 11 10 35 35 H 1.08996 * 109.46489 * 247.11440 * 13 12 11 36 36 H 1.09002 * 109.46660 * 7.10961 * 13 12 11 37 37 H 0.97002 * 119.99929 * 359.97438 * 14 13 12 38 38 H 1.08004 * 126.28904 * 359.96682 * 18 17 15 39 39 H 1.07997 * 126.17618 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0787 -4.8022 -0.0012 12 6 1.1734 -5.7446 -0.9062 13 6 2.3568 -5.7773 -1.8388 14 7 2.9791 -7.1027 -1.7918 15 6 4.0619 -7.3660 -2.5499 16 8 4.5229 -6.5026 -3.2732 17 6 4.6850 -8.6922 -2.5024 18 6 5.7920 -9.0949 -3.2218 19 6 6.0502 -10.4221 -2.8828 20 6 5.1000 -10.8110 -1.9643 21 6 4.9990 -12.1463 -1.3359 22 7 4.0853 -12.5423 -0.4363 23 7 4.3429 -13.7721 -0.1453 24 7 5.3754 -14.1532 -0.8130 25 1 5.7759 -15.0357 -0.7713 26 7 5.7934 -13.1793 -1.5462 27 7 4.2717 -9.7535 -1.7290 28 1 3.5165 -9.7501 -1.1202 29 1 -0.4850 0.8400 0.0004 30 1 0.3555 -2.3880 -0.0005 31 1 2.6846 -3.7145 0.8894 32 1 2.6846 -3.7146 -0.8905 33 1 0.2987 -4.8462 0.7446 34 1 0.4059 -6.5006 -0.9810 35 1 2.0240 -5.5681 -2.8554 36 1 3.0823 -5.0240 -1.5317 37 1 2.6119 -7.7907 -1.2150 38 1 6.3544 -8.4926 -3.9200 39 1 6.8506 -11.0349 -3.2703 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592678683.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:14:46 Heat of formation + Delta-G solvation = 142.781079 kcal Electronic energy + Delta-G solvation = -24036.297012 eV Core-core repulsion = 20210.780808 eV Total energy + Delta-G solvation = -3825.516204 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.52334 -42.37654 -40.29531 -37.97704 -36.16602 -35.44035 -34.60867 -34.37479 -32.51187 -32.12468 -30.55897 -28.15482 -26.69782 -25.72273 -25.25720 -24.39677 -23.06826 -21.62858 -21.21495 -20.74260 -20.20322 -19.49583 -18.59740 -18.22500 -17.56961 -17.20855 -16.62883 -16.51692 -15.89623 -15.52113 -15.42652 -15.10224 -15.08045 -14.91848 -14.82274 -14.20586 -13.96511 -13.88805 -13.70484 -13.26882 -13.16769 -12.94012 -12.74036 -12.49329 -12.28308 -12.13709 -12.04223 -11.91432 -11.67328 -11.43178 -11.02969 -10.44812 -10.16050 -10.00256 -9.21334 -8.99144 -7.97783 -5.27104 -0.27654 0.13693 0.87244 1.01561 1.20026 1.47158 1.48067 1.58501 1.82297 1.88337 2.21145 2.26029 2.56206 2.61976 3.16949 3.35926 3.71721 3.82521 4.04028 4.11431 4.17547 4.19324 4.27758 4.34205 4.39397 4.60278 4.84399 4.89409 4.91637 5.04102 5.13059 5.24830 5.46330 5.47814 5.56789 5.57855 5.71813 5.84269 6.13232 6.25103 6.44359 7.02466 7.04579 7.31164 8.04856 8.29410 9.25757 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.025767 B = 0.001914 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.413106 B =14626.825865 C =15242.377786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.075 4.075 3 Si 0.975 3.025 4 H -0.267 1.267 5 H -0.292 1.292 6 H -0.290 1.290 7 C -0.249 4.249 8 H 0.074 0.926 9 N -0.741 5.741 10 C 0.159 3.841 11 C -0.132 4.132 12 C -0.161 4.161 13 C 0.141 3.859 14 N -0.707 5.707 15 C 0.584 3.416 16 O -0.566 6.566 17 C -0.027 4.027 18 C -0.115 4.115 19 C -0.138 4.138 20 C 0.106 3.894 21 C 0.230 3.770 22 N -0.297 5.297 23 N -0.051 5.051 24 N -0.194 5.194 25 H 0.497 0.503 26 N -0.275 5.275 27 N -0.505 5.505 28 H 0.433 0.567 29 H 0.252 0.748 30 H 0.376 0.624 31 H 0.025 0.975 32 H 0.035 0.965 33 H 0.125 0.875 34 H 0.151 0.849 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.411 0.589 38 H 0.161 0.839 39 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.037 -34.722 -3.175 36.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.804 3.196 4 H -0.192 1.192 5 H -0.219 1.219 6 H -0.217 1.217 7 C -0.381 4.381 8 H 0.092 0.908 9 N -0.384 5.384 10 C 0.034 3.966 11 C -0.151 4.151 12 C -0.180 4.180 13 C 0.019 3.981 14 N -0.358 5.358 15 C 0.372 3.628 16 O -0.444 6.444 17 C -0.144 4.144 18 C -0.141 4.141 19 C -0.165 4.165 20 C -0.013 4.013 21 C -0.050 4.050 22 N -0.170 5.170 23 N -0.046 5.046 24 N -0.046 5.046 25 H 0.357 0.643 26 N -0.128 5.128 27 N -0.103 5.103 28 H 0.273 0.727 29 H 0.061 0.939 30 H 0.208 0.792 31 H 0.043 0.957 32 H 0.053 0.947 33 H 0.142 0.858 34 H 0.168 0.832 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.248 0.752 38 H 0.179 0.821 39 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 11.085 -34.424 -3.145 36.301 hybrid contribution -0.332 0.692 0.418 0.874 sum 10.754 -33.732 -2.727 35.509 Atomic orbital electron populations 1.69818 1.06560 1.26145 1.59272 1.25598 0.96498 1.01164 1.03448 0.85049 0.78163 0.79580 0.76819 1.19187 1.21866 1.21687 1.19678 0.91513 0.85338 1.41548 0.90783 1.42481 1.05700 1.00785 1.89442 1.20105 0.93781 0.84381 0.98352 1.23055 0.99413 0.94601 0.98054 1.22784 0.98303 1.01457 0.95502 1.20442 0.93968 0.84044 0.99679 1.45718 1.29865 1.15268 1.44983 1.17251 0.79928 0.85803 0.79784 1.90878 1.64177 1.47326 1.42038 1.20294 1.02461 0.88161 1.03473 1.21478 0.95905 0.95773 1.00947 1.21357 1.00455 0.95537 0.99198 1.16995 0.97302 0.83849 1.03198 1.22469 0.91707 0.94042 0.96776 1.76157 1.23148 1.03337 1.14393 1.78863 1.03516 1.06726 1.15480 1.47846 1.18022 1.14858 1.23907 0.64284 1.74976 1.23828 0.96627 1.17392 1.41777 1.25871 1.08464 1.34206 0.72683 0.93868 0.79226 0.95748 0.94738 0.85760 0.83171 0.91226 0.91420 0.75209 0.82135 0.80696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.98 13.06 21.65 0.28 -59.70 16 2 C -0.07 -4.39 5.50 84.86 0.47 -3.92 16 3 Si 0.98 47.11 29.55 68.60 2.03 49.14 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 7 C -0.25 -14.35 9.99 84.03 0.84 -13.51 16 8 H 0.07 4.13 7.83 -2.91 -0.02 4.11 16 9 N -0.74 -38.70 5.59 -347.19 -1.94 -40.65 16 10 C 0.16 6.48 6.35 85.63 0.54 7.03 16 11 C -0.13 -4.04 9.63 25.64 0.25 -3.79 16 12 C -0.16 -3.86 9.63 25.65 0.25 -3.62 16 13 C 0.14 3.75 5.76 85.64 0.49 4.24 16 14 N -0.71 -14.72 5.54 -470.90 -2.61 -17.33 16 15 C 0.58 14.68 7.78 86.43 0.67 15.36 16 16 O -0.57 -19.32 16.87 -4.36 -0.07 -19.39 16 17 C -0.03 -0.53 7.04 40.36 0.28 -0.24 16 18 C -0.11 -2.08 10.60 22.50 0.24 -1.84 16 19 C -0.14 -2.00 10.79 22.43 0.24 -1.76 16 20 C 0.11 1.63 7.12 40.89 0.29 1.92 16 21 C 0.23 3.46 8.21 137.11 1.13 4.59 16 22 N -0.30 -4.85 12.54 -52.41 -0.66 -5.51 16 23 N -0.05 -0.65 13.46 37.02 0.50 -0.15 16 24 N -0.19 -1.28 7.90 37.02 0.29 -0.98 16 25 H 0.50 -1.72 8.96 -347.50 -3.11 -4.84 16 26 N -0.27 -3.15 12.39 -52.36 -0.65 -3.80 16 27 N -0.51 -7.41 6.03 -172.28 -1.04 -8.45 16 28 H 0.43 4.51 8.17 -92.71 -0.76 3.75 16 29 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 30 H 0.38 20.60 7.66 -92.70 -0.71 19.89 16 31 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.04 1.44 5.29 -2.39 -0.01 1.43 16 33 H 0.12 3.57 8.06 -2.91 -0.02 3.54 16 34 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 35 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.07 2.18 5.30 -2.39 -0.01 2.17 16 37 H 0.41 5.58 7.57 -92.71 -0.70 4.88 16 38 H 0.16 2.80 8.06 -2.91 -0.02 2.77 16 39 H 0.18 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -78.80 350.26 -2.29 -81.10 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: -4.11 Total: 21.25 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: 5.69 Total: 4.46 kcal Atomic # 7 Polarization: -130.73 SS G_CDS: -5.82 Total: -136.55 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.07 Total: -19.39 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -78.80 -2.29 -81.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592678683.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 223.876 kcal (2) G-P(sol) polarization free energy of solvation -78.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds