Wall clock time and date at job start Fri Apr 10 2020 18:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99863 * 2 1 4 4 H 1.48495 * 109.47369 * 270.00086 * 3 2 1 5 5 H 1.48500 * 109.46845 * 30.00612 * 3 2 1 6 6 H 1.48503 * 109.46783 * 150.00165 * 3 2 1 7 7 C 1.38816 * 120.00046 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99649 * 359.97438 * 7 2 1 9 9 N 1.36930 * 119.99981 * 179.97438 * 7 2 1 10 10 C 1.46498 * 120.00119 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.47105 * 35.00079 * 10 9 7 12 12 C 1.52996 * 109.47204 * 275.00020 * 10 9 7 13 13 O 1.42907 * 109.47104 * 294.99679 * 12 10 9 14 14 C 1.53009 * 109.46988 * 154.99922 * 10 9 7 15 15 N 1.46496 * 109.46910 * 304.99879 * 14 10 9 16 16 C 1.34782 * 119.99852 * 179.97438 * 15 14 10 17 17 O 1.21559 * 119.99617 * 0.02562 * 16 15 14 18 18 C 1.47836 * 120.00208 * 180.02562 * 16 15 14 19 19 C 1.40597 * 120.28025 * 359.97438 * 18 16 15 20 20 N 1.30814 * 121.52537 * 179.97438 * 19 18 16 21 21 C 1.33757 * 121.79538 * 0.02562 * 20 19 18 22 22 N 1.33899 * 120.61965 * 179.97438 * 21 20 19 23 23 C 1.31330 * 119.84463 * 180.02562 * 22 21 20 24 24 C 1.39759 * 120.77705 * 359.97379 * 23 22 21 25 25 N 1.31308 * 120.55719 * 0.05024 * 24 23 22 26 26 C 1.33666 * 119.70505 * 359.97438 * 25 24 23 27 27 C 1.38911 * 120.27947 * 179.97438 * 18 16 15 28 28 H 0.97003 * 120.00227 * 359.97438 * 1 2 3 29 29 H 0.97005 * 119.99901 * 359.97438 * 9 7 2 30 30 H 1.08999 * 109.47150 * 54.99911 * 12 10 9 31 31 H 1.09001 * 109.47041 * 174.99782 * 12 10 9 32 32 H 0.96700 * 113.99810 * 179.97438 * 13 12 10 33 33 H 1.09004 * 109.46489 * 185.00027 * 14 10 9 34 34 H 1.08998 * 109.47020 * 65.00198 * 14 10 9 35 35 H 0.96998 * 120.00686 * 0.02562 * 15 14 10 36 36 H 1.07999 * 119.23804 * 359.97438 * 19 18 16 37 37 H 1.08000 * 119.60891 * 180.02562 * 23 22 21 38 38 H 1.08002 * 119.71994 * 180.02562 * 24 23 22 39 39 H 1.07995 * 120.99898 * 359.97438 * 27 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4708 -0.0011 11 1 3.5646 -3.2065 -0.5901 12 6 4.2588 -2.9751 1.4360 13 8 5.0754 -2.0671 2.1783 14 6 5.4991 -2.2589 -0.6113 15 7 5.3610 -1.6641 -1.9430 16 6 6.4587 -1.3861 -2.6740 17 8 7.5632 -1.6293 -2.2285 18 6 6.3194 -0.7854 -4.0176 19 6 5.0447 -0.5021 -4.5389 20 7 4.8932 0.0296 -5.7244 21 6 5.9399 0.3305 -6.5009 22 7 5.7576 0.8739 -7.7110 23 6 6.7963 1.1627 -8.4609 24 6 8.0953 0.9103 -8.0114 25 7 8.3008 0.3777 -6.8289 26 6 7.2586 0.0750 -6.0486 27 6 7.4468 -0.4960 -4.7758 28 1 -0.4850 0.8401 0.0004 29 1 3.8646 -0.3621 -0.0014 30 1 3.2748 -3.0414 1.9000 31 1 4.7246 -3.9605 1.4294 32 1 5.2112 -2.3243 3.1006 33 1 6.0105 -3.2181 -0.6930 34 1 6.0785 -1.5914 0.0265 35 1 4.4796 -1.4697 -2.2984 36 1 4.1703 -0.7289 -3.9468 37 1 6.6448 1.6013 -9.4362 38 1 8.9372 1.1550 -8.6421 39 1 8.4379 -0.7027 -4.4000 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676541762.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:15:14 Heat of formation + Delta-G solvation = 24.455128 kcal Electronic energy + Delta-G solvation = -25571.556248 eV Core-core repulsion = 21708.616295 eV Total energy + Delta-G solvation = -3862.939953 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.01067 -39.96847 -38.26472 -37.30601 -35.38661 -35.12893 -33.77017 -32.29804 -31.87054 -31.23681 -29.01362 -26.76022 -25.58518 -24.86425 -23.38283 -23.05883 -21.60909 -20.28860 -19.42831 -18.77194 -18.08088 -17.84611 -16.93681 -16.68764 -15.98197 -15.92448 -15.39335 -15.21964 -15.06003 -14.72084 -14.39507 -13.84219 -13.61409 -13.44185 -13.29796 -13.12263 -12.98085 -12.88175 -12.47104 -12.16409 -12.10017 -11.67303 -11.10261 -11.04734 -10.91613 -10.77576 -10.19305 -10.06426 -9.69259 -9.67554 -9.54434 -9.52412 -9.10526 -9.06269 -8.90928 -7.41397 -5.87443 -3.24876 -0.43782 -0.12538 1.38505 2.06934 2.98695 3.03760 3.16342 3.32804 3.40265 3.42779 3.61339 3.68364 3.69519 4.23555 4.27758 4.43634 4.51545 4.57677 4.65302 4.75573 4.87112 5.11882 5.15138 5.27545 5.41141 5.50346 5.55490 5.72466 5.83187 5.86319 5.96852 6.09965 6.30794 6.50750 6.55517 6.57648 7.05498 7.52622 7.57473 7.85140 8.05445 8.15314 8.31183 9.08483 9.80988 10.00108 11.29963 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.014302 B = 0.003677 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.334803 B = 7613.908586 C = 9003.260871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.014 3.986 3 Si 0.876 3.124 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.273 1.273 7 C -0.254 4.254 8 H 0.092 0.908 9 N -0.739 5.739 10 C 0.170 3.830 11 H 0.077 0.923 12 C 0.059 3.941 13 O -0.565 6.565 14 C 0.114 3.886 15 N -0.706 5.706 16 C 0.561 3.439 17 O -0.536 6.536 18 C -0.173 4.173 19 C 0.196 3.804 20 N -0.452 5.452 21 C 0.272 3.728 22 N -0.417 5.417 23 C 0.112 3.888 24 C 0.070 3.930 25 N -0.405 5.405 26 C 0.016 3.984 27 C 0.037 3.963 28 H 0.261 0.739 29 H 0.366 0.634 30 H 0.055 0.945 31 H 0.031 0.969 32 H 0.367 0.633 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.409 0.591 36 H 0.182 0.818 37 H 0.185 0.815 38 H 0.183 0.817 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.881 -2.341 -12.392 20.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.183 4.183 3 Si 0.706 3.294 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.199 1.199 7 C -0.384 4.384 8 H 0.109 0.891 9 N -0.383 5.383 10 C 0.060 3.940 11 H 0.095 0.905 12 C -0.022 4.022 13 O -0.369 6.369 14 C -0.009 4.009 15 N -0.358 5.358 16 C 0.345 3.655 17 O -0.415 6.415 18 C -0.180 4.180 19 C 0.018 3.982 20 N -0.161 5.161 21 C 0.033 3.967 22 N -0.131 5.131 23 C -0.068 4.068 24 C -0.107 4.107 25 N -0.120 5.120 26 C -0.110 4.110 27 C 0.009 3.991 28 H 0.071 0.929 29 H 0.199 0.801 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.212 0.788 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.247 0.753 36 H 0.199 0.801 37 H 0.202 0.798 38 H 0.200 0.800 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 15.465 -2.146 -12.835 20.211 hybrid contribution 0.766 0.924 0.748 1.414 sum 16.231 -1.222 -12.087 20.274 Atomic orbital electron populations 1.69689 1.05136 1.26062 1.56559 1.24631 0.95117 0.97141 1.01397 0.86677 0.79636 0.85101 0.77998 1.20894 1.21677 1.19928 1.19030 0.80325 0.94728 1.44305 0.89056 1.42763 1.03948 1.01746 1.89797 1.20593 0.90275 0.90722 0.92418 0.90523 1.22992 0.93955 0.90424 0.94862 1.86519 1.72315 1.52036 1.26023 1.21714 0.98793 0.98632 0.81804 1.45963 1.09065 1.62473 1.18317 1.17769 0.85000 0.78812 0.83889 1.90787 1.25455 1.53524 1.71704 1.21253 0.94848 1.04623 0.97326 1.23519 0.96573 0.88046 0.90027 1.67540 1.31852 1.11754 1.04935 1.20154 0.88461 0.95564 0.92535 1.68359 1.33928 1.08049 1.02794 1.24346 0.88708 0.93774 0.99983 1.24227 0.98533 0.94854 0.93048 1.68595 1.32423 1.06838 1.04104 1.20203 0.91355 1.02668 0.96756 1.21772 1.00495 0.87854 0.88973 0.92887 0.80087 0.92671 0.95043 0.78799 0.91131 0.90141 0.75329 0.80138 0.79844 0.79989 0.81598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.81 13.97 55.49 0.78 -27.04 16 2 C 0.01 0.39 5.50 -17.43 -0.10 0.29 16 3 Si 0.88 21.44 27.73 -169.99 -4.71 16.73 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.27 -6.53 6.52 56.52 0.37 -6.16 16 7 C -0.25 -6.53 10.41 -15.06 -0.16 -6.69 16 8 H 0.09 2.50 8.06 -52.49 -0.42 2.07 16 9 N -0.74 -15.74 4.31 -53.43 -0.23 -15.97 16 10 C 0.17 2.87 2.84 -67.93 -0.19 2.68 16 11 H 0.08 1.24 8.08 -51.93 -0.42 0.82 16 12 C 0.06 0.92 6.86 37.16 0.25 1.17 16 13 O -0.57 -8.98 12.64 -35.23 -0.45 -9.43 16 14 C 0.11 1.75 5.12 -4.04 -0.02 1.73 16 15 N -0.71 -10.35 5.34 -61.25 -0.33 -10.68 16 16 C 0.56 8.38 7.78 -12.33 -0.10 8.29 16 17 O -0.54 -9.36 16.38 5.31 0.09 -9.27 16 18 C -0.17 -2.32 5.88 -104.83 -0.62 -2.94 16 19 C 0.20 2.64 10.69 -17.10 -0.18 2.46 16 20 N -0.45 -6.90 10.39 -12.28 -0.13 -7.03 16 21 C 0.27 3.90 7.60 -157.59 -1.20 2.70 16 22 N -0.42 -5.32 10.55 -12.39 -0.13 -5.45 16 23 C 0.11 0.86 11.21 -17.20 -0.19 0.67 16 24 C 0.07 0.51 11.22 -17.21 -0.19 0.32 16 25 N -0.41 -4.48 10.46 -10.77 -0.11 -4.59 16 26 C 0.02 0.21 6.59 -84.78 -0.56 -0.35 16 27 C 0.04 0.47 9.68 -38.38 -0.37 0.10 16 28 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 29 H 0.37 8.12 5.66 -40.82 -0.23 7.88 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.37 4.10 9.12 45.56 0.42 4.52 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.08 1.39 7.39 -51.93 -0.38 1.00 16 35 H 0.41 5.80 6.17 -40.82 -0.25 5.55 16 36 H 0.18 2.15 6.38 -52.49 -0.33 1.81 16 37 H 0.18 0.56 8.06 -52.49 -0.42 0.14 16 38 H 0.18 0.48 8.06 -52.49 -0.42 0.05 16 39 H 0.17 1.98 7.70 -52.49 -0.40 1.58 16 LS Contribution 341.30 15.07 5.14 5.14 Total: -1.00 -35.95 341.30 -7.02 -42.97 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -3.31 Total: 14.17 kcal Atomic # 6 Polarization: 14.06 SS G_CDS: -3.62 Total: 10.44 kcal Atomic # 7 Polarization: -70.60 SS G_CDS: -0.15 Total: -70.75 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.36 Total: -18.70 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.71 Total: 16.73 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.95 -7.02 -42.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676541762.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.422 kcal (2) G-P(sol) polarization free energy of solvation -35.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds