Wall clock time and date at job start Fri Apr 10 2020 18:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99863 * 2 1 4 4 H 1.48495 * 109.47369 * 270.00086 * 3 2 1 5 5 H 1.48500 * 109.46845 * 30.00612 * 3 2 1 6 6 H 1.48503 * 109.46783 * 150.00165 * 3 2 1 7 7 C 1.38816 * 120.00046 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99649 * 359.97438 * 7 2 1 9 9 N 1.36930 * 119.99981 * 179.97438 * 7 2 1 10 10 C 1.46498 * 120.00119 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.47105 * 35.00079 * 10 9 7 12 12 C 1.52996 * 109.47204 * 275.00020 * 10 9 7 13 13 O 1.42907 * 109.47104 * 294.99679 * 12 10 9 14 14 C 1.53009 * 109.46988 * 154.99922 * 10 9 7 15 15 N 1.46496 * 109.46910 * 304.99879 * 14 10 9 16 16 C 1.34782 * 119.99852 * 179.97438 * 15 14 10 17 17 O 1.21559 * 119.99617 * 0.02562 * 16 15 14 18 18 C 1.47836 * 120.00208 * 180.02562 * 16 15 14 19 19 C 1.40597 * 120.28025 * 359.97438 * 18 16 15 20 20 N 1.30814 * 121.52537 * 179.97438 * 19 18 16 21 21 C 1.33757 * 121.79538 * 0.02562 * 20 19 18 22 22 N 1.33899 * 120.61965 * 179.97438 * 21 20 19 23 23 C 1.31330 * 119.84463 * 180.02562 * 22 21 20 24 24 C 1.39759 * 120.77705 * 359.97379 * 23 22 21 25 25 N 1.31308 * 120.55719 * 0.05024 * 24 23 22 26 26 C 1.33666 * 119.70505 * 359.97438 * 25 24 23 27 27 C 1.38911 * 120.27947 * 179.97438 * 18 16 15 28 28 H 0.97003 * 120.00227 * 359.97438 * 1 2 3 29 29 H 0.97005 * 119.99901 * 359.97438 * 9 7 2 30 30 H 1.08999 * 109.47150 * 54.99911 * 12 10 9 31 31 H 1.09001 * 109.47041 * 174.99782 * 12 10 9 32 32 H 0.96700 * 113.99810 * 179.97438 * 13 12 10 33 33 H 1.09004 * 109.46489 * 185.00027 * 14 10 9 34 34 H 1.08998 * 109.47020 * 65.00198 * 14 10 9 35 35 H 0.96998 * 120.00686 * 0.02562 * 15 14 10 36 36 H 1.07999 * 119.23804 * 359.97438 * 19 18 16 37 37 H 1.08000 * 119.60891 * 180.02562 * 23 22 21 38 38 H 1.08002 * 119.71994 * 180.02562 * 24 23 22 39 39 H 1.07995 * 120.99898 * 359.97438 * 27 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4708 -0.0011 11 1 3.5646 -3.2065 -0.5901 12 6 4.2588 -2.9751 1.4360 13 8 5.0754 -2.0671 2.1783 14 6 5.4991 -2.2589 -0.6113 15 7 5.3610 -1.6641 -1.9430 16 6 6.4587 -1.3861 -2.6740 17 8 7.5632 -1.6293 -2.2285 18 6 6.3194 -0.7854 -4.0176 19 6 5.0447 -0.5021 -4.5389 20 7 4.8932 0.0296 -5.7244 21 6 5.9399 0.3305 -6.5009 22 7 5.7576 0.8739 -7.7110 23 6 6.7963 1.1627 -8.4609 24 6 8.0953 0.9103 -8.0114 25 7 8.3008 0.3777 -6.8289 26 6 7.2586 0.0750 -6.0486 27 6 7.4468 -0.4960 -4.7758 28 1 -0.4850 0.8401 0.0004 29 1 3.8646 -0.3621 -0.0014 30 1 3.2748 -3.0414 1.9000 31 1 4.7246 -3.9605 1.4294 32 1 5.2112 -2.3243 3.1006 33 1 6.0105 -3.2181 -0.6930 34 1 6.0785 -1.5914 0.0265 35 1 4.4796 -1.4697 -2.2984 36 1 4.1703 -0.7289 -3.9468 37 1 6.6448 1.6013 -9.4362 38 1 8.9372 1.1550 -8.6421 39 1 8.4379 -0.7027 -4.4000 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676541762.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:15:13 Heat of formation + Delta-G solvation = -7.140300 kcal Electronic energy + Delta-G solvation = -25572.926329 eV Core-core repulsion = 21708.616295 eV Total energy + Delta-G solvation = -3864.310034 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.127 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.87293 -41.09052 -39.27587 -38.63299 -36.50045 -36.17769 -35.35815 -33.57348 -33.16226 -32.35625 -30.57469 -27.75933 -26.51377 -25.93266 -25.22583 -24.02383 -22.64901 -21.71532 -20.46317 -19.97314 -19.43677 -18.98338 -18.26727 -17.72742 -17.13681 -16.89038 -16.61434 -16.25726 -16.15885 -15.93223 -15.78532 -15.05612 -15.00334 -14.73326 -14.51566 -14.40322 -14.26030 -13.98824 -13.91461 -13.22411 -13.05283 -12.89457 -12.82261 -12.64237 -12.38692 -12.04958 -11.83161 -11.78728 -11.27851 -11.01074 -10.73307 -10.66060 -10.42021 -10.11500 -9.95752 -9.32310 -8.00230 -5.32280 -1.29424 -0.97868 0.50286 1.16716 1.37464 1.41343 1.46287 1.89214 1.99691 2.33479 2.48625 2.76973 2.79448 2.89067 3.30048 3.31985 3.41604 3.48381 3.57166 3.71751 3.73155 3.86088 3.96364 4.26194 4.30125 4.40130 4.54844 4.57362 4.64071 4.74909 4.81875 4.98666 5.18528 5.19895 5.33050 5.76766 5.80597 6.23388 6.26610 6.34864 6.69574 6.96332 7.05010 7.10562 7.84880 8.02951 9.20681 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.014302 B = 0.003677 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.334803 B = 7613.908586 C = 9003.260871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.978 5.978 2 C -0.050 4.050 3 Si 0.935 3.065 4 H -0.278 1.278 5 H -0.303 1.303 6 H -0.263 1.263 7 C -0.219 4.219 8 H 0.071 0.929 9 N -0.741 5.741 10 C 0.164 3.836 11 H 0.086 0.914 12 C 0.065 3.935 13 O -0.584 6.584 14 C 0.125 3.875 15 N -0.705 5.705 16 C 0.567 3.433 17 O -0.563 6.563 18 C -0.181 4.181 19 C 0.191 3.809 20 N -0.483 5.483 21 C 0.251 3.749 22 N -0.460 5.460 23 C 0.134 3.866 24 C 0.094 3.906 25 N -0.430 5.430 26 C 0.004 3.996 27 C 0.041 3.959 28 H 0.255 0.745 29 H 0.363 0.637 30 H 0.035 0.965 31 H 0.071 0.929 32 H 0.388 0.612 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.411 0.589 36 H 0.187 0.813 37 H 0.237 0.763 38 H 0.238 0.762 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.674 -2.093 -14.325 23.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.629 5.629 2 C -0.242 4.242 3 Si 0.764 3.236 4 H -0.204 1.204 5 H -0.230 1.230 6 H -0.188 1.188 7 C -0.350 4.350 8 H 0.089 0.911 9 N -0.384 5.384 10 C 0.055 3.945 11 H 0.104 0.896 12 C -0.016 4.016 13 O -0.391 6.391 14 C 0.002 3.998 15 N -0.356 5.356 16 C 0.353 3.647 17 O -0.443 6.443 18 C -0.188 4.188 19 C 0.014 3.986 20 N -0.192 5.192 21 C 0.012 3.988 22 N -0.175 5.175 23 C -0.046 4.046 24 C -0.084 4.084 25 N -0.144 5.144 26 C -0.120 4.120 27 C 0.013 3.987 28 H 0.065 0.935 29 H 0.196 0.804 30 H 0.053 0.947 31 H 0.089 0.911 32 H 0.236 0.764 33 H 0.109 0.891 34 H 0.083 0.917 35 H 0.249 0.751 36 H 0.204 0.796 37 H 0.253 0.747 38 H 0.254 0.746 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 18.298 -1.956 -14.711 23.559 hybrid contribution 0.064 0.818 1.117 1.386 sum 18.362 -1.139 -13.594 22.874 Atomic orbital electron populations 1.69835 1.06806 1.26295 1.59956 1.25226 0.95668 1.00184 1.03154 0.85717 0.78520 0.81367 0.77984 1.20419 1.23039 1.18846 1.19020 0.82129 0.93489 1.40352 0.91132 1.42751 1.02430 1.03463 1.89806 1.20874 0.90750 0.88908 0.93948 0.89603 1.22811 0.93521 0.92072 0.93212 1.86464 1.72096 1.52716 1.27829 1.21573 0.97384 0.99271 0.81608 1.45938 1.09199 1.62380 1.18120 1.17882 0.84459 0.78134 0.84177 1.90766 1.26299 1.54831 1.72437 1.21015 0.95170 1.05854 0.96730 1.23541 0.96818 0.88285 0.89940 1.67488 1.33163 1.12858 1.05711 1.20358 0.88716 0.96389 0.93309 1.68415 1.36299 1.09911 1.02922 1.25356 0.87931 0.90622 1.00717 1.25231 1.00141 0.91224 0.91797 1.68688 1.31635 1.08471 1.05628 1.20170 0.91480 1.03277 0.97106 1.21868 1.00395 0.87305 0.89154 0.93546 0.80411 0.94703 0.91119 0.76384 0.89079 0.91675 0.75077 0.79584 0.74733 0.74585 0.81165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.34 13.97 21.65 0.30 -60.04 16 2 C -0.05 -2.81 5.50 84.86 0.47 -2.35 16 3 Si 0.93 45.07 27.73 68.60 1.90 46.97 16 4 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 5 H -0.30 -15.15 7.11 99.48 0.71 -14.44 16 6 H -0.26 -12.06 6.52 99.48 0.65 -11.41 16 7 C -0.22 -11.32 10.41 84.04 0.87 -10.44 16 8 H 0.07 3.92 8.06 -2.91 -0.02 3.90 16 9 N -0.74 -31.09 4.31 -322.94 -1.39 -32.48 16 10 C 0.16 5.30 2.84 44.99 0.13 5.43 16 11 H 0.09 2.65 8.08 -2.39 -0.02 2.63 16 12 C 0.06 1.88 6.86 71.98 0.49 2.37 16 13 O -0.58 -17.42 12.64 -148.98 -1.88 -19.30 16 14 C 0.13 3.66 5.12 86.38 0.44 4.11 16 15 N -0.71 -20.27 5.34 -465.96 -2.49 -22.76 16 16 C 0.57 16.87 7.78 86.78 0.67 17.55 16 17 O -0.56 -19.43 16.38 -3.90 -0.06 -19.50 16 18 C -0.18 -4.90 5.88 -20.00 -0.12 -5.01 16 19 C 0.19 5.29 10.69 85.42 0.91 6.20 16 20 N -0.48 -15.10 10.39 -192.75 -2.00 -17.10 16 21 C 0.25 7.11 7.60 134.96 1.03 8.13 16 22 N -0.46 -11.02 10.55 -193.10 -2.04 -13.06 16 23 C 0.13 1.54 11.21 85.14 0.95 2.49 16 24 C 0.09 0.95 11.22 85.14 0.96 1.91 16 25 N -0.43 -8.48 10.46 -187.98 -1.97 -10.45 16 26 C 0.00 0.10 6.59 40.34 0.27 0.36 16 27 C 0.04 1.04 9.68 23.05 0.22 1.27 16 28 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 29 H 0.36 15.76 5.66 -92.70 -0.52 15.23 16 30 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.39 7.83 9.12 -74.06 -0.68 7.15 16 33 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.06 2.15 7.39 -2.39 -0.02 2.14 16 35 H 0.41 11.58 6.17 -92.71 -0.57 11.00 16 36 H 0.19 4.62 6.38 -2.91 -0.02 4.60 16 37 H 0.24 0.04 8.06 -2.91 -0.02 0.02 16 38 H 0.24 -0.32 8.06 -2.91 -0.02 -0.35 16 39 H 0.17 4.07 7.70 -2.91 -0.02 4.05 16 Total: -1.00 -81.03 341.30 -3.02 -84.05 By element: Atomic # 1 Polarization: 32.34 SS G_CDS: -0.69 Total: 31.65 kcal Atomic # 6 Polarization: 24.71 SS G_CDS: 7.30 Total: 32.01 kcal Atomic # 7 Polarization: -146.30 SS G_CDS: -9.58 Total: -155.88 kcal Atomic # 8 Polarization: -36.85 SS G_CDS: -1.95 Total: -38.80 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.90 Total: 46.97 kcal Total: -81.03 -3.02 -84.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676541762.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.909 kcal (2) G-P(sol) polarization free energy of solvation -81.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds