Wall clock time and date at job start Fri Apr 10 2020 18:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00424 * 2 1 4 4 H 1.48505 * 109.46746 * 270.00068 * 3 2 1 5 5 H 1.48503 * 109.46825 * 29.99765 * 3 2 1 6 6 H 1.48492 * 109.47350 * 150.00176 * 3 2 1 7 7 C 1.38811 * 119.99529 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99983 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00499 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00507 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47070 * 34.98890 * 10 9 7 12 12 C 1.52999 * 109.47593 * 154.99758 * 10 9 7 13 13 N 1.46499 * 109.46727 * 304.99740 * 12 10 9 14 14 C 1.34780 * 119.99813 * 179.97438 * 13 12 10 15 15 O 1.21280 * 120.00102 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.99981 * 180.02562 * 14 13 12 17 17 H 1.09000 * 110.21534 * 318.07055 * 16 14 13 18 18 C 1.54483 * 110.24911 * 79.99872 * 16 14 13 19 19 C 1.54628 * 101.76290 * 93.58529 * 18 16 14 20 20 C 1.51274 * 104.19622 * 24.79820 * 19 18 16 21 21 O 1.21283 * 124.94267 * 163.70754 * 20 19 18 22 22 N 1.34424 * 110.11979 * 343.74709 * 20 19 18 23 23 C 1.50706 * 109.46867 * 274.99798 * 10 9 7 24 24 C 1.38234 * 120.00196 * 140.00054 * 23 10 9 25 25 C 1.38235 * 119.99814 * 179.97438 * 24 23 10 26 26 C 1.38230 * 120.00326 * 359.97438 * 25 24 23 27 27 C 1.38243 * 120.00092 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99618 * 359.97438 * 27 26 25 29 29 H 0.97003 * 119.99624 * 359.97438 * 1 2 3 30 30 H 0.97006 * 119.99524 * 359.97438 * 9 7 2 31 31 H 1.08999 * 109.47400 * 64.99382 * 12 10 9 32 32 H 1.08996 * 109.47027 * 184.99955 * 12 10 9 33 33 H 0.97008 * 120.00349 * 0.02562 * 13 12 10 34 34 H 1.09001 * 110.97204 * 211.70631 * 18 16 14 35 35 H 1.08996 * 110.96700 * 335.43110 * 18 16 14 36 36 H 1.08997 * 110.48391 * 143.47871 * 19 18 16 37 37 H 1.09001 * 110.48500 * 266.11926 * 19 18 16 38 38 H 0.96995 * 124.35049 * 179.59112 * 22 20 19 39 39 H 1.08000 * 119.99516 * 0.24808 * 24 23 10 40 40 H 1.08000 * 119.99297 * 179.97438 * 25 24 23 41 41 H 1.08001 * 120.00350 * 179.97438 * 26 25 24 42 42 H 1.07999 * 120.00235 * 179.97438 * 27 26 25 43 43 H 1.08005 * 119.99804 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0017 11 1 2.9682 -3.5504 0.5916 12 6 1.1802 -4.7519 0.6111 13 7 0.7328 -4.3346 1.9422 14 6 -0.0576 -5.1461 2.6726 15 8 -0.3980 -6.2219 2.2280 16 6 -0.5184 -4.7166 4.0416 17 1 0.3009 -4.2447 4.5840 18 6 -1.7118 -3.7429 3.9230 19 6 -2.9166 -4.7054 4.0373 20 6 -2.3718 -5.8926 4.8004 21 8 -3.0492 -6.7403 5.3422 22 7 -1.0278 -5.8709 4.7913 23 6 2.4173 -4.0306 -1.4134 24 6 3.6549 -4.5808 -1.6899 25 6 3.9843 -4.9241 -2.9878 26 6 3.0759 -4.7177 -4.0091 27 6 1.8378 -4.1685 -3.7324 28 6 1.5080 -3.8262 -2.4344 29 1 -0.4850 0.8401 0.0004 30 1 0.3554 -2.3880 0.0005 31 1 0.3131 -4.9201 -0.0275 32 1 1.7551 -5.6743 0.6937 33 1 1.0047 -3.4740 2.2977 34 1 -1.7097 -3.0217 4.7404 35 1 -1.7071 -3.2358 2.9582 36 1 -3.7289 -4.2356 4.5919 37 1 -3.2559 -5.0111 3.0476 38 1 -0.4668 -6.5330 5.2246 39 1 4.3627 -4.7465 -0.8912 40 1 4.9514 -5.3535 -3.2037 41 1 3.3334 -4.9856 -5.0232 42 1 1.1283 -4.0069 -4.5304 43 1 0.5409 -3.3967 -2.2183 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691778424.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:15:20 Heat of formation + Delta-G solvation = -34.156966 kcal Electronic energy + Delta-G solvation = -26249.751173 eV Core-core repulsion = 22487.809952 eV Total energy + Delta-G solvation = -3761.941221 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.82817 -39.20080 -38.63011 -36.33752 -35.77593 -33.72230 -32.13035 -31.37635 -30.46982 -29.64501 -28.88038 -26.95578 -23.98775 -23.16016 -22.40989 -21.95876 -20.67618 -20.26493 -19.94834 -17.81636 -17.53463 -17.24738 -16.44237 -15.91467 -15.55307 -15.13248 -15.02147 -14.63640 -14.53598 -14.22465 -13.79429 -13.67337 -13.53732 -13.30228 -13.02245 -12.91767 -12.82532 -12.71328 -12.39965 -12.08124 -11.57469 -11.38059 -11.20372 -11.02353 -10.91521 -10.77781 -10.52930 -10.22351 -10.21648 -9.92106 -9.88036 -9.19801 -9.04486 -8.82487 -8.46391 -8.24834 -7.22297 -5.95586 -3.26940 1.80279 1.87154 2.51767 2.65257 3.05137 3.32312 3.38765 3.40049 3.54563 4.24566 4.25345 4.35250 4.43200 4.66550 4.82855 5.02743 5.16773 5.25892 5.28991 5.35608 5.39012 5.47959 5.53982 5.59826 5.69227 5.77362 5.78469 5.81135 5.97471 6.02901 6.17784 6.33400 6.42245 6.56340 6.60879 6.66791 6.87903 6.89799 6.96238 7.21499 7.47085 7.56118 7.71867 8.16710 8.20668 8.35791 9.34186 9.82908 10.19842 11.25683 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010146 B = 0.004144 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2759.172845 B = 6754.850725 C = 8833.964028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.003 4.003 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.713 5.713 10 C 0.198 3.802 11 H 0.066 0.934 12 C 0.121 3.879 13 N -0.707 5.707 14 C 0.496 3.504 15 O -0.540 6.540 16 C 0.114 3.886 17 H 0.114 0.886 18 C -0.121 4.121 19 C -0.157 4.157 20 C 0.529 3.471 21 O -0.538 6.538 22 N -0.708 5.708 23 C -0.082 4.082 24 C -0.120 4.120 25 C -0.130 4.130 26 C -0.134 4.134 27 C -0.128 4.128 28 C -0.083 4.083 29 H 0.257 0.743 30 H 0.387 0.613 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.412 0.588 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.412 0.588 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.114 0.886 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.579 -7.046 3.402 8.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.736 3.264 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.354 5.354 10 C 0.087 3.913 11 H 0.084 0.916 12 C -0.004 4.004 13 N -0.360 5.360 14 C 0.279 3.721 15 O -0.417 6.417 16 C 0.004 3.996 17 H 0.131 0.869 18 C -0.159 4.159 19 C -0.197 4.197 20 C 0.316 3.684 21 O -0.415 6.415 22 N -0.363 5.363 23 C -0.086 4.086 24 C -0.139 4.139 25 C -0.148 4.148 26 C -0.152 4.152 27 C -0.146 4.146 28 C -0.102 4.102 29 H 0.067 0.933 30 H 0.221 0.779 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.249 0.751 34 H 0.115 0.885 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.251 0.749 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.129 0.871 42 H 0.132 0.868 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.998 -8.008 3.351 8.907 hybrid contribution 0.804 1.245 -0.111 1.486 sum 2.802 -6.763 3.240 8.005 Atomic orbital electron populations 1.69644 1.05035 1.25929 1.56914 1.24698 0.95444 0.97595 1.02288 0.86240 0.78727 0.83831 0.77640 1.21708 1.21751 1.20713 1.19178 0.91025 0.83675 1.43663 0.91112 1.42448 1.05754 0.99211 1.88018 1.19480 0.95014 0.86475 0.90312 0.91630 1.21603 0.98688 0.97217 0.82860 1.45953 1.50281 1.21850 1.17893 1.20885 0.78913 0.84980 0.87276 1.90716 1.56403 1.22554 1.72027 1.21572 0.99422 0.87598 0.91051 0.86863 1.22621 0.91039 0.96417 1.05811 1.22360 0.99451 0.95029 1.02870 1.20849 0.82351 0.86494 0.78714 1.90738 1.62294 1.41486 1.46992 1.45860 1.07713 1.28689 1.54023 1.20963 0.93589 0.95886 0.98168 1.21008 0.96662 0.99867 0.96382 1.20988 0.99051 1.01474 0.93289 1.20992 0.94519 1.01141 0.98554 1.21115 0.96747 0.99877 0.96825 1.21002 1.00040 0.97102 0.92026 0.93341 0.77870 0.91508 0.91498 0.75091 0.88524 0.87742 0.87645 0.87437 0.74938 0.86763 0.86986 0.87069 0.86842 0.85918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -24.72 13.06 55.49 0.72 -23.99 16 2 C 0.00 -0.09 5.50 -17.43 -0.10 -0.18 16 3 Si 0.90 20.51 29.55 -169.99 -5.02 15.49 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.24 -5.85 9.92 -15.06 -0.15 -6.00 16 8 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 9 N -0.71 -14.63 3.80 -54.55 -0.21 -14.84 16 10 C 0.20 3.31 2.64 -69.08 -0.18 3.13 16 11 H 0.07 1.09 7.94 -51.93 -0.41 0.67 16 12 C 0.12 1.82 5.21 -4.04 -0.02 1.80 16 13 N -0.71 -9.62 5.39 -60.30 -0.32 -9.95 16 14 C 0.50 6.83 7.01 -10.98 -0.08 6.75 16 15 O -0.54 -9.54 16.56 5.56 0.09 -9.45 16 16 C 0.11 1.18 3.93 -68.16 -0.27 0.91 16 17 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 18 C -0.12 -1.16 6.69 -25.10 -0.17 -1.32 16 19 C -0.16 -1.71 6.85 -26.75 -0.18 -1.89 16 20 C 0.53 7.30 8.43 -10.86 -0.09 7.21 16 21 O -0.54 -9.47 18.03 5.56 0.10 -9.37 16 22 N -0.71 -8.19 5.45 -53.88 -0.29 -8.48 16 23 C -0.08 -1.39 4.92 -104.62 -0.51 -1.90 16 24 C -0.12 -1.82 9.67 -39.58 -0.38 -2.21 16 25 C -0.13 -1.83 10.05 -39.59 -0.40 -2.22 16 26 C -0.13 -1.90 10.05 -39.58 -0.40 -2.30 16 27 C -0.13 -1.98 10.05 -39.58 -0.40 -2.38 16 28 C -0.08 -1.45 9.32 -39.58 -0.37 -1.82 16 29 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 30 H 0.39 8.56 7.80 -40.82 -0.32 8.24 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.41 5.45 8.14 -40.82 -0.33 5.12 16 34 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.10 1.11 7.89 -51.93 -0.41 0.70 16 36 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.11 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.41 4.26 8.96 -40.82 -0.37 3.89 16 39 H 0.11 1.50 8.04 -52.49 -0.42 1.08 16 40 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 41 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 42 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 43 H 0.12 2.28 7.72 -52.48 -0.41 1.88 16 LS Contribution 369.05 15.07 5.56 5.56 Total: -1.00 -31.39 369.05 -9.08 -40.48 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: -6.02 Total: 16.99 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -3.70 Total: -2.43 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: -0.10 Total: -57.26 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: 0.19 Total: -18.81 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.39 -9.08 -40.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691778424.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.320 kcal (2) G-P(sol) polarization free energy of solvation -31.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds