Wall clock time and date at job start Fri Apr 10 2020 18:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00424 * 2 1 4 4 H 1.48505 * 109.46746 * 270.00068 * 3 2 1 5 5 H 1.48503 * 109.46825 * 29.99765 * 3 2 1 6 6 H 1.48492 * 109.47350 * 150.00176 * 3 2 1 7 7 C 1.38811 * 119.99529 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99983 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00499 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00507 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47070 * 34.98890 * 10 9 7 12 12 C 1.52999 * 109.47593 * 154.99758 * 10 9 7 13 13 N 1.46499 * 109.46727 * 304.99740 * 12 10 9 14 14 C 1.34780 * 119.99813 * 179.97438 * 13 12 10 15 15 O 1.21280 * 120.00102 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.99981 * 180.02562 * 14 13 12 17 17 H 1.09000 * 110.21534 * 318.07055 * 16 14 13 18 18 C 1.54483 * 110.24911 * 79.99872 * 16 14 13 19 19 C 1.54628 * 101.76290 * 93.58529 * 18 16 14 20 20 C 1.51274 * 104.19622 * 24.79820 * 19 18 16 21 21 O 1.21283 * 124.94267 * 163.70754 * 20 19 18 22 22 N 1.34424 * 110.11979 * 343.74709 * 20 19 18 23 23 C 1.50706 * 109.46867 * 274.99798 * 10 9 7 24 24 C 1.38234 * 120.00196 * 140.00054 * 23 10 9 25 25 C 1.38235 * 119.99814 * 179.97438 * 24 23 10 26 26 C 1.38230 * 120.00326 * 359.97438 * 25 24 23 27 27 C 1.38243 * 120.00092 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99618 * 359.97438 * 27 26 25 29 29 H 0.97003 * 119.99624 * 359.97438 * 1 2 3 30 30 H 0.97006 * 119.99524 * 359.97438 * 9 7 2 31 31 H 1.08999 * 109.47400 * 64.99382 * 12 10 9 32 32 H 1.08996 * 109.47027 * 184.99955 * 12 10 9 33 33 H 0.97008 * 120.00349 * 0.02562 * 13 12 10 34 34 H 1.09001 * 110.97204 * 211.70631 * 18 16 14 35 35 H 1.08996 * 110.96700 * 335.43110 * 18 16 14 36 36 H 1.08997 * 110.48391 * 143.47871 * 19 18 16 37 37 H 1.09001 * 110.48500 * 266.11926 * 19 18 16 38 38 H 0.96995 * 124.35049 * 179.59112 * 22 20 19 39 39 H 1.08000 * 119.99516 * 0.24808 * 24 23 10 40 40 H 1.08000 * 119.99297 * 179.97438 * 25 24 23 41 41 H 1.08001 * 120.00350 * 179.97438 * 26 25 24 42 42 H 1.07999 * 120.00235 * 179.97438 * 27 26 25 43 43 H 1.08005 * 119.99804 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0017 11 1 2.9682 -3.5504 0.5916 12 6 1.1802 -4.7519 0.6111 13 7 0.7328 -4.3346 1.9422 14 6 -0.0576 -5.1461 2.6726 15 8 -0.3980 -6.2219 2.2280 16 6 -0.5184 -4.7166 4.0416 17 1 0.3009 -4.2447 4.5840 18 6 -1.7118 -3.7429 3.9230 19 6 -2.9166 -4.7054 4.0373 20 6 -2.3718 -5.8926 4.8004 21 8 -3.0492 -6.7403 5.3422 22 7 -1.0278 -5.8709 4.7913 23 6 2.4173 -4.0306 -1.4134 24 6 3.6549 -4.5808 -1.6899 25 6 3.9843 -4.9241 -2.9878 26 6 3.0759 -4.7177 -4.0091 27 6 1.8378 -4.1685 -3.7324 28 6 1.5080 -3.8262 -2.4344 29 1 -0.4850 0.8401 0.0004 30 1 0.3554 -2.3880 0.0005 31 1 0.3131 -4.9201 -0.0275 32 1 1.7551 -5.6743 0.6937 33 1 1.0047 -3.4740 2.2977 34 1 -1.7097 -3.0217 4.7404 35 1 -1.7071 -3.2358 2.9582 36 1 -3.7289 -4.2356 4.5919 37 1 -3.2559 -5.0111 3.0476 38 1 -0.4668 -6.5330 5.2246 39 1 4.3627 -4.7465 -0.8912 40 1 4.9514 -5.3535 -3.2037 41 1 3.3334 -4.9856 -5.0232 42 1 1.1283 -4.0069 -4.5304 43 1 0.5409 -3.3967 -2.2183 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691778424.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:15:20 Heat of formation + Delta-G solvation = -56.145286 kcal Electronic energy + Delta-G solvation = -26250.704658 eV Core-core repulsion = 22487.809952 eV Total energy + Delta-G solvation = -3762.894706 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.87158 -40.41833 -39.81866 -37.55820 -37.03942 -35.20136 -33.65329 -32.28624 -31.68231 -31.14720 -30.02311 -28.17979 -25.61795 -24.42532 -23.48062 -23.14623 -21.68868 -21.46949 -21.12499 -19.32687 -18.64242 -18.50843 -17.68462 -17.06622 -16.88525 -16.37274 -16.25736 -15.86621 -15.77211 -15.61199 -15.19687 -14.80614 -14.70722 -14.62258 -14.19940 -14.14358 -14.02342 -13.76891 -13.59526 -13.38362 -12.89186 -12.75620 -12.45206 -12.39452 -12.26855 -12.11053 -11.98137 -11.79761 -11.59908 -11.37168 -11.03806 -10.95192 -10.13338 -10.04466 -9.66336 -9.49988 -8.97949 -7.87209 -5.15640 0.60248 0.66357 1.43281 1.52100 1.54922 1.55949 1.60949 2.04639 2.51698 2.61007 3.03922 3.32187 3.46888 3.50216 3.72886 3.84536 3.93210 4.08883 4.18641 4.20439 4.24359 4.36999 4.40861 4.43211 4.45664 4.73894 4.78420 4.81505 4.86643 4.98070 5.02858 5.06844 5.24594 5.32610 5.46295 5.61616 5.67422 5.71156 5.75075 5.91419 5.95585 6.27838 6.33183 6.58913 7.13299 7.24262 7.42505 8.08927 8.36436 9.34446 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010146 B = 0.004144 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2759.172845 B = 6754.850725 C = 8833.964028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.056 4.056 3 Si 0.955 3.045 4 H -0.301 1.301 5 H -0.298 1.298 6 H -0.270 1.270 7 C -0.228 4.228 8 H 0.072 0.928 9 N -0.715 5.715 10 C 0.205 3.795 11 H 0.074 0.926 12 C 0.132 3.868 13 N -0.700 5.700 14 C 0.496 3.504 15 O -0.582 6.582 16 C 0.119 3.881 17 H 0.154 0.846 18 C -0.113 4.113 19 C -0.155 4.155 20 C 0.520 3.480 21 O -0.584 6.584 22 N -0.700 5.700 23 C -0.101 4.101 24 C -0.127 4.127 25 C -0.128 4.128 26 C -0.133 4.133 27 C -0.138 4.138 28 C -0.110 4.110 29 H 0.249 0.751 30 H 0.377 0.623 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.417 0.583 34 H 0.127 0.873 35 H 0.095 0.905 36 H 0.125 0.875 37 H 0.097 0.903 38 H 0.417 0.583 39 H 0.135 0.865 40 H 0.145 0.855 41 H 0.141 0.859 42 H 0.126 0.874 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.828 -6.991 3.542 9.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.609 5.609 2 C -0.250 4.250 3 Si 0.787 3.213 4 H -0.230 1.230 5 H -0.225 1.225 6 H -0.194 1.194 7 C -0.360 4.360 8 H 0.090 0.910 9 N -0.355 5.355 10 C 0.095 3.905 11 H 0.092 0.908 12 C 0.007 3.993 13 N -0.352 5.352 14 C 0.282 3.718 15 O -0.462 6.462 16 C 0.009 3.991 17 H 0.172 0.828 18 C -0.151 4.151 19 C -0.195 4.195 20 C 0.308 3.692 21 O -0.464 6.464 22 N -0.354 5.354 23 C -0.104 4.104 24 C -0.145 4.145 25 C -0.146 4.146 26 C -0.151 4.151 27 C -0.157 4.157 28 C -0.128 4.128 29 H 0.058 0.942 30 H 0.210 0.790 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.255 0.745 34 H 0.146 0.854 35 H 0.113 0.887 36 H 0.143 0.857 37 H 0.115 0.885 38 H 0.257 0.743 39 H 0.153 0.847 40 H 0.163 0.837 41 H 0.159 0.841 42 H 0.144 0.856 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.320 -7.956 3.492 9.703 hybrid contribution 0.193 1.116 -0.258 1.162 sum 4.514 -6.839 3.234 8.810 Atomic orbital electron populations 1.69765 1.06085 1.25713 1.59291 1.25235 0.95997 0.99940 1.03796 0.85419 0.78147 0.81053 0.76725 1.22950 1.22511 1.19448 1.19412 0.91140 0.84655 1.40811 0.90975 1.42451 1.05292 0.99822 1.87953 1.19542 0.94959 0.85170 0.90801 0.90805 1.21388 0.97697 0.96959 0.83222 1.45885 1.50111 1.21964 1.17269 1.21498 0.77910 0.84141 0.88271 1.90705 1.57852 1.24442 1.73233 1.21758 1.00940 0.87232 0.89124 0.82850 1.22669 0.89602 0.96253 1.06555 1.22393 1.00694 0.94338 1.02098 1.21341 0.82928 0.86639 0.78256 1.90706 1.63396 1.43283 1.49065 1.45900 1.07242 1.29040 1.53173 1.20922 0.94581 0.97373 0.97562 1.21293 0.96080 0.99342 0.97825 1.21409 1.00272 1.00284 0.92601 1.21379 0.93633 0.99834 1.00255 1.21347 0.98009 0.99952 0.96344 1.20962 0.99517 0.98819 0.93515 0.94199 0.79019 0.93470 0.90667 0.74544 0.85428 0.88688 0.85664 0.88452 0.74346 0.84687 0.83734 0.84073 0.85611 0.88429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -51.70 13.06 21.65 0.28 -51.42 16 2 C -0.06 -2.84 5.50 84.86 0.47 -2.38 16 3 Si 0.96 41.98 29.55 68.60 2.03 44.01 16 4 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 5 H -0.30 -13.34 7.11 99.48 0.71 -12.63 16 6 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.23 -10.79 9.92 84.03 0.83 -9.95 16 8 H 0.07 3.36 7.83 -2.91 -0.02 3.34 16 9 N -0.72 -29.36 3.80 -326.50 -1.24 -30.60 16 10 C 0.20 6.72 2.64 44.25 0.12 6.83 16 11 H 0.07 2.31 7.94 -2.39 -0.02 2.30 16 12 C 0.13 3.97 5.21 86.38 0.45 4.42 16 13 N -0.70 -18.46 5.39 -463.07 -2.50 -20.95 16 14 C 0.50 13.24 7.01 87.66 0.61 13.86 16 15 O -0.58 -20.63 16.56 -3.03 -0.05 -20.68 16 16 C 0.12 2.22 3.93 44.70 0.18 2.39 16 17 H 0.15 1.74 8.14 -2.39 -0.02 1.72 16 18 C -0.11 -1.93 6.69 31.65 0.21 -1.72 16 19 C -0.16 -3.25 6.85 30.58 0.21 -3.04 16 20 C 0.52 14.17 8.43 87.89 0.74 14.91 16 21 O -0.58 -20.87 18.03 -3.04 -0.05 -20.93 16 22 N -0.70 -15.37 5.45 -442.97 -2.41 -17.79 16 23 C -0.10 -3.34 4.92 -19.86 -0.10 -3.43 16 24 C -0.13 -3.54 9.67 22.27 0.22 -3.33 16 25 C -0.13 -3.17 10.05 22.27 0.22 -2.95 16 26 C -0.13 -3.41 10.05 22.27 0.22 -3.19 16 27 C -0.14 -4.19 10.05 22.27 0.22 -3.96 16 28 C -0.11 -3.87 9.32 22.27 0.21 -3.66 16 29 H 0.25 13.35 8.31 -92.71 -0.77 12.58 16 30 H 0.38 17.03 7.80 -92.70 -0.72 16.31 16 31 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.08 2.14 8.14 -2.39 -0.02 2.13 16 33 H 0.42 10.42 8.14 -92.70 -0.75 9.66 16 34 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.09 1.89 7.89 -2.39 -0.02 1.87 16 36 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.42 8.18 8.96 -92.71 -0.83 7.35 16 39 H 0.14 3.13 8.04 -2.91 -0.02 3.11 16 40 H 0.14 2.64 8.06 -2.91 -0.02 2.61 16 41 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 42 H 0.13 3.34 8.06 -2.91 -0.02 3.32 16 43 H 0.10 3.84 7.72 -2.91 -0.02 3.82 16 Total: -1.00 -69.04 369.05 -0.38 -69.42 By element: Atomic # 1 Polarization: 45.39 SS G_CDS: -1.25 Total: 44.13 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: 4.82 Total: 4.80 kcal Atomic # 7 Polarization: -114.89 SS G_CDS: -5.87 Total: -120.76 kcal Atomic # 8 Polarization: -41.50 SS G_CDS: -0.10 Total: -41.61 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -69.04 -0.38 -69.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691778424.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.279 kcal (2) G-P(sol) polarization free energy of solvation -69.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds