Wall clock time and date at job start Fri Apr 10 2020 18:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00299 * 2 1 4 4 H 1.48492 * 109.47291 * 89.99875 * 3 2 1 5 5 H 1.48495 * 109.47317 * 210.00644 * 3 2 1 6 6 H 1.48507 * 109.46881 * 330.00056 * 3 2 1 7 7 C 1.38816 * 120.00049 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99699 * 359.97438 * 7 2 1 9 9 N 1.36931 * 120.00251 * 179.97438 * 7 2 1 10 10 C 1.46499 * 120.00114 * 175.17311 * 9 7 2 11 11 C 1.53003 * 115.55055 * 65.27431 * 10 9 7 12 12 N 1.46499 * 109.47255 * 80.39082 * 11 10 9 13 13 C 1.34776 * 119.99813 * 174.94756 * 12 11 10 14 14 O 1.21675 * 120.00054 * 359.97438 * 13 12 11 15 15 C 1.46819 * 119.99664 * 179.97438 * 13 12 11 16 16 C 1.41304 * 126.50612 * 359.69082 * 15 13 12 17 17 N 1.30369 * 108.46336 * 179.81515 * 16 15 13 18 18 N 1.39980 * 109.30727 * 0.44758 * 17 16 15 19 19 C 1.35992 * 108.16898 * 359.71348 * 18 17 16 20 20 N 1.37172 * 120.55508 * 179.97438 * 19 18 17 21 21 H 0.96996 * 119.88585 * 179.97438 * 20 19 18 22 22 C 1.36360 * 120.24146 * 359.97438 * 20 19 18 23 23 C 1.35235 * 119.82953 * 0.02562 * 22 20 19 24 24 C 1.34861 * 131.92712 * 179.68791 * 18 17 16 25 25 O 1.21816 * 120.11168 * 0.02562 * 24 18 17 26 26 C 1.52997 * 117.49661 * 279.60185 * 10 9 7 27 27 C 1.53002 * 117.49923 * 210.94298 * 10 9 7 28 28 H 0.97002 * 119.99905 * 359.97438 * 1 2 3 29 29 H 0.97001 * 119.99788 * 355.17003 * 9 7 2 30 30 H 1.08995 * 109.47043 * 200.39446 * 11 10 9 31 31 H 1.08997 * 109.46696 * 320.38714 * 11 10 9 32 32 H 0.96999 * 120.00088 * 354.94721 * 12 11 10 33 33 H 1.08005 * 125.76435 * 359.97438 * 16 15 13 34 34 H 1.07998 * 120.08364 * 179.97438 * 22 20 19 35 35 H 1.08005 * 120.15366 * 180.02562 * 23 22 20 36 36 H 1.09000 * 117.50034 * 359.97438 * 26 10 9 37 37 H 1.09008 * 117.49740 * 145.02175 * 26 10 9 38 38 H 1.08997 * 117.50134 * 214.98044 * 27 10 9 39 39 H 1.08999 * 117.49829 * 359.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 1.4000 5 1 3.5477 1.4402 -0.7001 6 1 1.4477 2.6527 -0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4665 0.1051 11 6 3.9415 -3.4289 -1.0720 12 7 4.8180 -3.0164 -2.1710 13 6 4.9128 -3.7774 -3.2793 14 8 4.2708 -4.8072 -3.3669 15 6 5.7908 -3.3636 -4.3809 16 6 6.5888 -2.1984 -4.4277 17 7 7.2281 -2.1811 -5.5637 18 7 6.8772 -3.3125 -6.3096 19 6 5.9908 -4.0425 -5.5810 20 7 5.4768 -5.2133 -6.0777 21 1 4.8455 -5.7265 -5.5496 22 6 5.8502 -5.6584 -7.3114 23 6 6.7309 -4.9425 -8.0467 24 6 7.2566 -3.7398 -7.5311 25 8 8.0504 -3.0889 -8.1870 26 6 4.2697 -3.0766 1.4993 27 6 5.4736 -2.4376 0.8025 28 1 -0.4850 0.8401 0.0004 29 1 3.8645 -0.3651 -0.0718 30 1 4.2045 -4.4386 -0.7569 31 1 2.9048 -3.4117 -1.4080 32 1 5.3301 -2.1955 -2.1010 33 1 6.6592 -1.4500 -3.6522 34 1 5.4443 -6.5807 -7.6998 35 1 7.0299 -5.2899 -9.0247 36 1 3.8289 -2.5371 2.3376 37 1 4.2524 -4.1637 1.5779 38 1 6.2477 -3.1045 0.4229 39 1 5.8245 -1.4780 1.1818 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699664774.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:15:27 Heat of formation + Delta-G solvation = 83.896633 kcal Electronic energy + Delta-G solvation = -25698.715132 eV Core-core repulsion = 21838.352757 eV Total energy + Delta-G solvation = -3860.362376 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.127 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.01432 -39.72324 -38.85915 -38.32215 -37.59463 -33.96571 -33.18691 -33.03384 -31.81758 -30.40709 -30.01041 -26.89104 -24.79820 -24.04637 -23.59011 -22.75240 -21.98372 -20.53197 -19.50070 -19.04545 -18.47111 -17.71822 -17.70294 -17.05350 -16.99005 -16.13991 -15.73520 -15.32276 -14.75368 -14.31027 -14.25082 -14.10590 -13.91422 -13.81770 -13.79699 -13.47483 -13.35781 -12.78235 -12.42109 -12.24663 -11.43999 -11.28363 -11.10694 -11.02202 -10.81947 -10.51817 -10.39806 -10.23866 -9.97662 -9.88428 -9.67998 -9.49267 -8.95271 -8.83630 -8.34706 -7.41975 -5.85799 -3.24467 0.43176 0.63122 1.54488 1.84770 2.15021 2.91601 3.24615 3.28977 3.32725 3.38184 3.39795 3.73785 4.06248 4.31947 4.33922 4.40069 4.49694 4.67094 4.92423 4.93641 5.04559 5.08843 5.22241 5.34128 5.47393 5.67353 5.69544 5.90313 5.94654 6.10209 6.25509 6.31576 6.34000 6.53131 6.54208 6.62644 6.68599 6.70730 7.47629 7.70007 7.89985 8.32286 8.33175 9.09278 9.80796 9.98335 11.31790 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.017099 B = 0.003188 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.156154 B = 8780.001887 C = 9220.981895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.009 3.991 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.277 1.277 6 H -0.291 1.291 7 C -0.245 4.245 8 H 0.093 0.907 9 N -0.715 5.715 10 C 0.131 3.869 11 C 0.149 3.851 12 N -0.703 5.703 13 C 0.597 3.403 14 O -0.567 6.567 15 C -0.301 4.301 16 C 0.129 3.871 17 N -0.263 5.263 18 N -0.358 5.358 19 C 0.369 3.631 20 N -0.586 5.586 21 H 0.448 0.552 22 C 0.191 3.809 23 C -0.307 4.307 24 C 0.563 3.437 25 O -0.490 6.490 26 C -0.180 4.180 27 C -0.188 4.188 28 H 0.261 0.739 29 H 0.365 0.635 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.400 0.600 33 H 0.208 0.792 34 H 0.192 0.808 35 H 0.180 0.820 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.636 -13.092 -10.441 21.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.187 4.187 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.204 1.204 6 H -0.217 1.217 7 C -0.375 4.375 8 H 0.111 0.889 9 N -0.356 5.356 10 C 0.038 3.962 11 C 0.024 3.976 12 N -0.351 5.351 13 C 0.384 3.616 14 O -0.448 6.448 15 C -0.319 4.319 16 C -0.061 4.061 17 N -0.079 5.079 18 N -0.158 5.158 19 C 0.144 3.856 20 N -0.204 5.204 21 H 0.291 0.709 22 C 0.062 3.938 23 C -0.337 4.337 24 C 0.362 3.638 25 O -0.361 6.361 26 C -0.220 4.220 27 C -0.226 4.226 28 H 0.071 0.929 29 H 0.200 0.800 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.234 0.766 33 H 0.224 0.776 34 H 0.209 0.791 35 H 0.197 0.803 36 H 0.116 0.884 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 14.277 -12.799 -11.755 22.491 hybrid contribution -0.141 1.109 0.775 1.360 sum 14.137 -11.690 -10.980 21.379 Atomic orbital electron populations 1.69691 1.05114 1.25960 1.56753 1.24674 0.95201 0.97166 1.01648 0.86575 0.79126 0.85092 0.77773 1.21066 1.20369 1.21697 1.18968 0.80022 0.94805 1.43657 0.88940 1.42154 1.03848 1.00977 1.88650 1.20060 0.94700 0.90221 0.91256 1.21279 0.94994 0.96107 0.85181 1.45611 1.46505 1.26003 1.16939 1.16775 0.80386 0.83346 0.81095 1.90715 1.47387 1.25538 1.81144 1.19584 1.14341 1.01136 0.96872 1.24321 0.90993 0.95640 0.95194 1.77603 1.23346 1.01648 1.05292 1.48094 1.33542 1.18280 1.15873 1.18731 0.90019 0.85521 0.91288 1.41164 1.42718 1.19589 1.16950 0.70891 1.22456 0.91304 0.97669 0.82405 1.21673 1.08577 0.97823 1.05604 1.17164 0.82342 0.86583 0.77746 1.90919 1.32429 1.56775 1.55951 1.23356 1.01164 0.99401 0.98083 1.23147 0.91343 1.02640 1.05507 0.92908 0.80025 0.91610 0.89937 0.76614 0.77561 0.79118 0.80300 0.88377 0.89532 0.89081 0.89082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.13 13.97 55.49 0.78 -27.35 16 2 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 3 Si 0.88 21.00 27.78 -169.99 -4.72 16.28 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.28 -6.05 6.45 56.52 0.36 -5.69 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.25 -6.43 10.04 -15.06 -0.15 -6.58 16 8 H 0.09 2.64 8.00 -52.49 -0.42 2.22 16 9 N -0.71 -15.19 5.29 -47.23 -0.25 -15.44 16 10 C 0.13 2.21 2.15 -131.82 -0.28 1.93 16 11 C 0.15 2.41 5.73 -4.04 -0.02 2.38 16 12 N -0.70 -9.67 5.50 -61.58 -0.34 -10.01 16 13 C 0.60 8.37 7.79 -12.79 -0.10 8.27 16 14 O -0.57 -9.04 15.81 5.21 0.08 -8.96 16 15 C -0.30 -3.71 6.15 -104.86 -0.64 -4.35 16 16 C 0.13 1.48 11.47 -17.01 -0.20 1.28 16 17 N -0.26 -3.71 12.54 30.85 0.39 -3.33 16 18 N -0.36 -4.78 3.79 -13.82 -0.05 -4.83 16 19 C 0.37 4.24 7.78 -153.53 -1.20 3.04 16 20 N -0.59 -4.41 5.39 -11.73 -0.06 -4.48 16 21 H 0.45 2.97 7.78 -40.82 -0.32 2.66 16 22 C 0.19 0.85 11.25 -16.61 -0.19 0.66 16 23 C -0.31 -2.25 9.95 -39.60 -0.39 -2.65 16 24 C 0.56 7.28 7.70 -15.17 -0.12 7.16 16 25 O -0.49 -8.14 17.90 5.08 0.09 -8.05 16 26 C -0.18 -2.77 10.11 -26.70 -0.27 -3.04 16 27 C -0.19 -2.54 10.14 -26.69 -0.27 -2.81 16 28 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.37 7.62 5.87 -40.82 -0.24 7.38 16 30 H 0.07 0.99 7.94 -51.93 -0.41 0.57 16 31 H 0.08 1.61 7.73 -51.93 -0.40 1.21 16 32 H 0.40 4.75 7.41 -40.82 -0.30 4.45 16 33 H 0.21 1.61 7.48 -52.48 -0.39 1.21 16 34 H 0.19 -0.17 8.06 -52.49 -0.42 -0.60 16 35 H 0.18 0.85 8.06 -52.48 -0.42 0.43 16 36 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 37 H 0.09 1.18 8.08 -51.92 -0.42 0.76 16 38 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 343.55 15.07 5.18 5.18 Total: -1.00 -37.11 343.55 -7.03 -44.14 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -4.19 Total: 11.38 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: -3.93 Total: 5.46 kcal Atomic # 7 Polarization: -65.89 SS G_CDS: 0.46 Total: -65.43 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: 0.17 Total: -17.00 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.72 Total: 16.28 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -37.11 -7.03 -44.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699664774.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.034 kcal (2) G-P(sol) polarization free energy of solvation -37.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds