Wall clock time and date at job start Fri Apr 10 2020 18:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00299 * 2 1 4 4 H 1.48492 * 109.47291 * 89.99875 * 3 2 1 5 5 H 1.48495 * 109.47317 * 210.00644 * 3 2 1 6 6 H 1.48507 * 109.46881 * 330.00056 * 3 2 1 7 7 C 1.38816 * 120.00049 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99699 * 359.97438 * 7 2 1 9 9 N 1.36931 * 120.00251 * 179.97438 * 7 2 1 10 10 C 1.46499 * 120.00114 * 175.17311 * 9 7 2 11 11 C 1.53003 * 115.55055 * 65.27431 * 10 9 7 12 12 N 1.46499 * 109.47255 * 80.39082 * 11 10 9 13 13 C 1.34776 * 119.99813 * 174.94756 * 12 11 10 14 14 O 1.21675 * 120.00054 * 359.97438 * 13 12 11 15 15 C 1.46819 * 119.99664 * 179.97438 * 13 12 11 16 16 C 1.41304 * 126.50612 * 359.69082 * 15 13 12 17 17 N 1.30369 * 108.46336 * 179.81515 * 16 15 13 18 18 N 1.39980 * 109.30727 * 0.44758 * 17 16 15 19 19 C 1.35992 * 108.16898 * 359.71348 * 18 17 16 20 20 N 1.37172 * 120.55508 * 179.97438 * 19 18 17 21 21 H 0.96996 * 119.88585 * 179.97438 * 20 19 18 22 22 C 1.36360 * 120.24146 * 359.97438 * 20 19 18 23 23 C 1.35235 * 119.82953 * 0.02562 * 22 20 19 24 24 C 1.34861 * 131.92712 * 179.68791 * 18 17 16 25 25 O 1.21816 * 120.11168 * 0.02562 * 24 18 17 26 26 C 1.52997 * 117.49661 * 279.60185 * 10 9 7 27 27 C 1.53002 * 117.49923 * 210.94298 * 10 9 7 28 28 H 0.97002 * 119.99905 * 359.97438 * 1 2 3 29 29 H 0.97001 * 119.99788 * 355.17003 * 9 7 2 30 30 H 1.08995 * 109.47043 * 200.39446 * 11 10 9 31 31 H 1.08997 * 109.46696 * 320.38714 * 11 10 9 32 32 H 0.96999 * 120.00088 * 354.94721 * 12 11 10 33 33 H 1.08005 * 125.76435 * 359.97438 * 16 15 13 34 34 H 1.07998 * 120.08364 * 179.97438 * 22 20 19 35 35 H 1.08005 * 120.15366 * 180.02562 * 23 22 20 36 36 H 1.09000 * 117.50034 * 359.97438 * 26 10 9 37 37 H 1.09008 * 117.49740 * 145.02175 * 26 10 9 38 38 H 1.08997 * 117.50134 * 214.98044 * 27 10 9 39 39 H 1.08999 * 117.49829 * 359.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 1.4000 5 1 3.5477 1.4402 -0.7001 6 1 1.4477 2.6527 -0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4665 0.1051 11 6 3.9415 -3.4289 -1.0720 12 7 4.8180 -3.0164 -2.1710 13 6 4.9128 -3.7774 -3.2793 14 8 4.2708 -4.8072 -3.3669 15 6 5.7908 -3.3636 -4.3809 16 6 6.5888 -2.1984 -4.4277 17 7 7.2281 -2.1811 -5.5637 18 7 6.8772 -3.3125 -6.3096 19 6 5.9908 -4.0425 -5.5810 20 7 5.4768 -5.2133 -6.0777 21 1 4.8455 -5.7265 -5.5496 22 6 5.8502 -5.6584 -7.3114 23 6 6.7309 -4.9425 -8.0467 24 6 7.2566 -3.7398 -7.5311 25 8 8.0504 -3.0889 -8.1870 26 6 4.2697 -3.0766 1.4993 27 6 5.4736 -2.4376 0.8025 28 1 -0.4850 0.8401 0.0004 29 1 3.8645 -0.3651 -0.0718 30 1 4.2045 -4.4386 -0.7569 31 1 2.9048 -3.4117 -1.4080 32 1 5.3301 -2.1955 -2.1010 33 1 6.6592 -1.4500 -3.6522 34 1 5.4443 -6.5807 -7.6998 35 1 7.0299 -5.2899 -9.0247 36 1 3.8289 -2.5371 2.3376 37 1 4.2524 -4.1637 1.5779 38 1 6.2477 -3.1045 0.4229 39 1 5.8245 -1.4780 1.1818 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699664774.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:15:27 Heat of formation + Delta-G solvation = 54.147617 kcal Electronic energy + Delta-G solvation = -25700.005147 eV Core-core repulsion = 21838.352757 eV Total energy + Delta-G solvation = -3861.652390 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.127 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.87880 -40.77795 -39.88325 -39.12546 -38.88577 -35.31025 -34.80021 -34.06880 -32.53438 -32.31390 -30.92974 -28.05822 -25.65064 -25.55099 -24.85966 -23.66915 -23.15012 -21.53160 -20.75474 -20.05506 -19.67923 -19.20217 -18.58151 -18.05263 -17.90251 -17.20233 -16.86406 -16.52994 -16.22508 -15.84201 -15.47663 -14.96280 -14.88325 -14.72696 -14.66581 -14.48309 -14.28430 -14.25167 -14.05613 -13.54992 -13.03896 -12.87247 -12.39010 -12.22745 -12.13702 -11.83495 -11.78630 -11.68788 -11.25146 -11.14184 -10.97682 -10.75991 -10.60044 -10.01724 -9.29102 -9.18180 -7.98574 -5.33579 -0.28641 -0.16120 0.71710 0.94297 1.39875 1.44306 1.45611 1.51146 2.08798 2.16923 2.35745 2.51175 2.97760 3.11702 3.33282 3.36299 3.46176 3.65070 3.71580 3.85548 3.90776 4.17170 4.22548 4.33074 4.44076 4.53983 4.81457 4.87134 4.91353 4.98868 5.10847 5.20437 5.23162 5.41834 5.49796 5.66659 5.77164 5.84293 5.85409 6.24981 6.57559 6.65029 7.11520 7.24316 7.86234 8.04632 9.22763 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.017099 B = 0.003188 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.156154 B = 8780.001887 C = 9220.981895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.065 4.065 3 Si 0.953 3.047 4 H -0.282 1.282 5 H -0.242 1.242 6 H -0.304 1.304 7 C -0.217 4.217 8 H 0.055 0.945 9 N -0.717 5.717 10 C 0.099 3.901 11 C 0.164 3.836 12 N -0.697 5.697 13 C 0.600 3.400 14 O -0.589 6.589 15 C -0.320 4.320 16 C 0.144 3.856 17 N -0.311 5.311 18 N -0.368 5.368 19 C 0.372 3.628 20 N -0.575 5.575 21 H 0.456 0.544 22 C 0.227 3.773 23 C -0.322 4.322 24 C 0.543 3.457 25 O -0.549 6.549 26 C -0.186 4.186 27 C -0.147 4.147 28 H 0.256 0.744 29 H 0.370 0.630 30 H 0.080 0.920 31 H 0.038 0.962 32 H 0.410 0.590 33 H 0.238 0.762 34 H 0.259 0.741 35 H 0.206 0.794 36 H 0.079 0.921 37 H 0.106 0.894 38 H 0.123 0.877 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.698 -14.635 -10.716 23.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.256 4.256 3 Si 0.781 3.219 4 H -0.208 1.208 5 H -0.166 1.166 6 H -0.232 1.232 7 C -0.348 4.348 8 H 0.073 0.927 9 N -0.359 5.359 10 C 0.008 3.992 11 C 0.038 3.962 12 N -0.346 5.346 13 C 0.389 3.611 14 O -0.472 6.472 15 C -0.338 4.338 16 C -0.046 4.046 17 N -0.127 5.127 18 N -0.168 5.168 19 C 0.145 3.855 20 N -0.193 5.193 21 H 0.300 0.700 22 C 0.099 3.901 23 C -0.350 4.350 24 C 0.345 3.655 25 O -0.425 6.425 26 C -0.226 4.226 27 C -0.184 4.184 28 H 0.064 0.936 29 H 0.205 0.795 30 H 0.098 0.902 31 H 0.057 0.943 32 H 0.246 0.754 33 H 0.254 0.746 34 H 0.275 0.725 35 H 0.223 0.777 36 H 0.097 0.903 37 H 0.124 0.876 38 H 0.141 0.859 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 16.401 -14.395 -12.017 24.912 hybrid contribution -0.833 1.359 0.870 1.816 sum 15.568 -13.036 -11.147 23.163 Atomic orbital electron populations 1.69888 1.07298 1.26493 1.59910 1.25481 0.95992 1.01193 1.02907 0.85444 0.78943 0.79672 0.77870 1.20846 1.16645 1.23184 1.18861 0.82349 0.93112 1.40500 0.92690 1.42034 1.02043 1.03061 1.88734 1.20291 0.97675 0.89087 0.92166 1.20941 0.93091 0.96764 0.85418 1.45481 1.46172 1.26496 1.16464 1.16918 0.80093 0.82913 0.81219 1.90695 1.48386 1.26560 1.81589 1.19424 1.15289 1.02168 0.96951 1.24821 0.89330 0.95600 0.94863 1.77557 1.25374 1.03222 1.06581 1.48263 1.33854 1.18398 1.16260 1.18970 0.89226 0.86340 0.90922 1.41501 1.41833 1.18060 1.17943 0.69980 1.23451 0.88520 0.98235 0.79912 1.21920 1.09732 0.96157 1.07184 1.18271 0.82094 0.87792 0.77303 1.90878 1.35529 1.58824 1.57300 1.23384 1.02544 1.00559 0.96113 1.23254 0.90077 1.03244 1.01848 0.93561 0.79477 0.90185 0.94330 0.75353 0.74563 0.72473 0.77734 0.90256 0.87589 0.85922 0.88135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -62.01 13.97 21.65 0.30 -61.71 16 2 C -0.06 -3.66 5.50 84.86 0.47 -3.19 16 3 Si 0.95 43.41 27.78 68.60 1.91 45.32 16 4 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.24 -9.48 6.45 99.48 0.64 -8.84 16 6 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 7 C -0.22 -11.61 10.04 84.04 0.84 -10.77 16 8 H 0.06 3.30 8.00 -2.91 -0.02 3.28 16 9 N -0.72 -29.62 5.29 -303.35 -1.61 -31.23 16 10 C 0.10 3.17 2.15 3.60 0.01 3.18 16 11 C 0.16 5.09 5.73 86.38 0.49 5.58 16 12 N -0.70 -17.90 5.50 -466.96 -2.57 -20.47 16 13 C 0.60 15.91 7.79 86.49 0.67 16.58 16 14 O -0.59 -18.02 15.81 -4.27 -0.07 -18.09 16 15 C -0.32 -7.43 6.15 -20.02 -0.12 -7.56 16 16 C 0.14 3.12 11.47 85.66 0.98 4.10 16 17 N -0.31 -8.79 12.54 -56.30 -0.71 -9.49 16 18 N -0.37 -9.73 3.79 -315.76 -1.20 -10.92 16 19 C 0.37 7.98 7.78 132.61 1.03 9.01 16 20 N -0.58 -6.89 5.39 -191.03 -1.03 -7.92 16 21 H 0.46 4.53 7.78 -92.71 -0.72 3.81 16 22 C 0.23 1.02 11.25 83.30 0.94 1.95 16 23 C -0.32 -3.93 9.95 22.26 0.22 -3.70 16 24 C 0.54 13.99 7.70 84.91 0.65 14.65 16 25 O -0.55 -19.06 17.90 -4.72 -0.08 -19.14 16 26 C -0.19 -5.31 10.11 30.62 0.31 -5.00 16 27 C -0.15 -3.36 10.14 30.62 0.31 -3.05 16 28 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 29 H 0.37 14.49 5.87 -92.71 -0.54 13.94 16 30 H 0.08 2.26 7.94 -2.39 -0.02 2.24 16 31 H 0.04 1.54 7.73 -2.39 -0.02 1.52 16 32 H 0.41 8.66 7.41 -92.71 -0.69 7.98 16 33 H 0.24 3.15 7.48 -2.91 -0.02 3.13 16 34 H 0.26 -2.32 8.06 -2.91 -0.02 -2.34 16 35 H 0.21 1.34 8.06 -2.91 -0.02 1.31 16 36 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 37 H 0.11 2.60 8.08 -2.38 -0.02 2.58 16 38 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -88.39 343.55 0.89 -87.51 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: -0.87 Total: 24.37 kcal Atomic # 6 Polarization: 14.97 SS G_CDS: 6.81 Total: 21.78 kcal Atomic # 7 Polarization: -134.94 SS G_CDS: -6.80 Total: -141.74 kcal Atomic # 8 Polarization: -37.08 SS G_CDS: -0.15 Total: -37.23 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.91 Total: 45.32 kcal Total: -88.39 0.89 -87.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699664774.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.654 kcal (2) G-P(sol) polarization free energy of solvation -88.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds