Wall clock time and date at job start Fri Apr 10 2020 18:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99852 * 2 1 4 4 H 1.48507 * 109.46776 * 240.00490 * 3 2 1 5 5 H 1.48499 * 109.46960 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47195 * 120.00578 * 3 2 1 7 7 C 1.38811 * 120.00197 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00004 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99809 * 359.97438 * 7 2 1 10 10 C 1.47585 * 134.49263 * 180.02562 * 9 7 2 11 11 C 1.53940 * 86.11796 * 155.35538 * 10 9 7 12 12 O 1.42904 * 113.74016 * 269.15475 * 11 10 9 13 13 C 1.53003 * 113.74233 * 137.95404 * 11 10 9 14 14 N 1.46497 * 109.47218 * 184.99878 * 13 11 10 15 15 C 1.34773 * 120.00093 * 180.02562 * 14 13 11 16 16 O 1.21450 * 120.00197 * 359.97438 * 15 14 13 17 17 C 1.48638 * 119.99881 * 180.02562 * 15 14 13 18 18 N 1.33505 * 120.60394 * 359.71283 * 17 15 14 19 19 C 1.30807 * 122.65359 * 180.31194 * 18 17 15 20 20 N 1.34064 * 123.38310 * 359.94797 * 19 18 17 21 21 H 0.96991 * 120.21376 * 180.02562 * 20 19 18 22 22 C 1.36867 * 119.56687 * 0.03025 * 20 19 18 23 23 N 1.31636 * 135.95909 * 179.97438 * 22 20 19 24 24 C 1.33525 * 110.83558 * 180.02562 * 23 22 20 25 25 C 1.36068 * 110.93075 * 0.02562 * 24 23 22 26 26 C 1.39545 * 120.60054 * 179.97438 * 17 15 14 27 27 C 1.47578 * 134.49507 * 359.97438 * 9 7 2 28 28 H 0.96999 * 120.00289 * 359.97438 * 1 2 3 29 29 H 1.09006 * 113.76878 * 41.05012 * 10 9 7 30 30 H 1.09002 * 113.77062 * 269.66047 * 10 9 7 31 31 H 0.96704 * 113.99988 * 178.08164 * 12 11 10 32 32 H 1.09001 * 109.47007 * 64.99789 * 13 11 10 33 33 H 1.08996 * 109.47031 * 304.99767 * 13 11 10 34 34 H 0.97005 * 119.99878 * 359.97438 * 14 13 11 35 35 H 1.07997 * 118.31097 * 179.97438 * 19 18 17 36 36 H 1.07998 * 124.53132 * 180.02562 * 24 23 22 37 37 H 1.07997 * 126.72425 * 180.02562 * 25 24 23 38 38 H 1.09002 * 113.77138 * 90.34900 * 27 9 7 39 39 H 1.08994 * 113.77225 * 318.95078 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6964 -1.2126 5 1 1.2851 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 1.7202 -3.8101 -0.0005 11 6 0.3472 -4.0829 0.6399 12 8 0.3636 -4.0579 2.0686 13 6 -0.3634 -5.3137 0.0730 14 7 -1.7024 -5.4172 0.6582 15 6 -2.5159 -6.4318 0.3042 16 8 -2.1391 -7.2600 -0.5002 17 6 -3.8747 -6.5364 0.8975 18 7 -4.2995 -5.6354 1.7864 19 6 -5.4844 -5.6922 2.3377 20 7 -6.3796 -6.6521 2.0651 21 1 -7.2461 -6.6495 2.5010 22 6 -6.0629 -7.6359 1.1678 23 7 -6.6665 -8.6964 0.6741 24 6 -5.8770 -9.3300 -0.1966 25 6 -4.6798 -8.6949 -0.3186 26 6 -4.7275 -7.5814 0.5396 27 6 -0.1032 -2.7574 0.0004 28 1 -0.4850 0.8400 0.0004 29 1 2.5626 -4.0323 0.6546 30 1 1.8320 -4.2351 -0.9981 31 1 -0.5026 -4.1998 2.4745 32 1 0.2097 -6.2084 0.3165 33 1 -0.4464 -5.2188 -1.0096 34 1 -2.0033 -4.7559 1.3010 35 1 -5.7555 -4.9261 3.0490 36 1 -6.1518 -10.2265 -0.7323 37 1 -3.8550 -8.9875 -0.9514 38 1 -0.5278 -2.8728 -0.9968 39 1 -0.7163 -2.1394 0.6562 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699915608.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:15:32 Heat of formation + Delta-G solvation = 86.563105 kcal Electronic energy + Delta-G solvation = -25679.220603 eV Core-core repulsion = 21818.973854 eV Total energy + Delta-G solvation = -3860.246749 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.127 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.19570 -39.87999 -38.96443 -38.60028 -35.37989 -34.94767 -34.05008 -31.98991 -30.79933 -29.47259 -28.65959 -26.59116 -25.18716 -24.88255 -23.85301 -22.12550 -21.41001 -20.83215 -19.40793 -18.88163 -18.59310 -17.40594 -16.85089 -16.59461 -16.16922 -15.98425 -15.69092 -15.21013 -14.89844 -14.52963 -13.99407 -13.98385 -13.53477 -13.36715 -13.26278 -13.12470 -12.71793 -12.61565 -12.26636 -11.98030 -11.71798 -11.07620 -10.97592 -10.92630 -10.74341 -10.49791 -10.26415 -9.95445 -9.76341 -9.52715 -9.28170 -9.02474 -8.89498 -8.82368 -8.16973 -6.90693 -5.77663 -3.09405 -0.58792 1.06178 1.83473 2.39401 2.78295 3.11908 3.39879 3.40151 3.41320 3.43853 3.44948 3.80634 4.20668 4.42887 4.46996 4.52080 4.62220 4.92742 5.06253 5.20424 5.21647 5.27083 5.56734 5.70422 5.70924 5.96068 5.99257 6.10343 6.24461 6.29047 6.35829 6.49718 6.54828 6.71671 7.00334 7.04391 7.16433 7.41257 7.49579 7.63624 7.95321 7.99401 8.14123 9.03074 9.69491 10.55437 11.39558 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.024366 B = 0.002772 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.877320 B =10099.667753 C =10720.665287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.914 3.086 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.219 4.219 8 H 0.081 0.919 9 N -0.602 5.602 10 C 0.136 3.864 11 C 0.064 3.936 12 O -0.526 6.526 13 C 0.100 3.900 14 N -0.699 5.699 15 C 0.565 3.435 16 O -0.514 6.514 17 C 0.199 3.801 18 N -0.515 5.515 19 C 0.354 3.646 20 N -0.519 5.519 21 H 0.429 0.571 22 C 0.254 3.746 23 N -0.519 5.519 24 C 0.061 3.939 25 C -0.195 4.195 26 C -0.153 4.153 27 C 0.144 3.856 28 H 0.253 0.747 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.363 0.637 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.410 0.590 35 H 0.224 0.776 36 H 0.168 0.832 37 H 0.154 0.846 38 H 0.034 0.966 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.318 -13.909 6.019 20.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.347 4.347 8 H 0.098 0.902 9 N -0.328 5.328 10 C 0.010 3.990 11 C 0.021 3.979 12 O -0.329 6.329 13 C -0.025 4.025 14 N -0.351 5.351 15 C 0.348 3.652 16 O -0.388 6.388 17 C 0.064 3.936 18 N -0.235 5.235 19 C 0.071 3.929 20 N -0.123 5.123 21 H 0.268 0.732 22 C -0.001 4.001 23 N -0.239 5.239 24 C -0.081 4.081 25 C -0.219 4.219 26 C -0.165 4.165 27 C 0.018 3.982 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.209 0.791 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.246 0.754 35 H 0.240 0.760 36 H 0.185 0.815 37 H 0.172 0.828 38 H 0.052 0.948 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.661 -13.798 5.655 20.224 hybrid contribution -0.513 0.833 0.050 0.980 sum -14.174 -12.965 5.705 20.039 Atomic orbital electron populations 1.69787 1.05009 1.25407 1.56804 1.24763 0.95708 0.97509 1.02438 0.86173 0.78461 0.83014 0.77946 1.21192 1.21584 1.21055 1.18946 0.90265 0.81727 1.43731 0.90163 1.45639 1.01968 0.99149 1.86010 1.22558 0.93307 0.86654 0.96524 1.23756 0.99183 0.93206 0.81744 1.86616 1.33688 1.95143 1.17499 1.22197 0.81234 0.99769 0.99254 1.45808 1.15842 1.27838 1.45597 1.17762 0.83123 0.82254 0.82059 1.90789 1.74255 1.40697 1.33063 1.21305 0.93929 0.88567 0.89792 1.67859 1.14406 1.27758 1.13527 1.24851 0.84123 0.88984 0.94949 1.41844 1.18393 1.19520 1.32499 0.73245 1.20551 0.92528 0.92667 0.94328 1.69534 1.33374 1.06105 1.14927 1.22687 0.90664 0.99129 0.95657 1.21614 1.00621 0.96126 1.03502 1.20871 0.93917 0.99022 1.02726 1.22895 0.88932 0.89126 0.97202 0.93658 0.92595 0.93177 0.79088 0.90655 0.89825 0.75362 0.76040 0.81523 0.82840 0.94826 0.90286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.96 11.38 55.49 0.63 -26.33 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 3 Si 0.91 22.11 29.55 -169.99 -5.02 17.08 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.22 -6.17 10.70 -15.06 -0.16 -6.34 16 8 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 9 N -0.60 -15.37 3.70 -177.82 -0.66 -16.02 16 10 C 0.14 2.77 8.34 -2.98 -0.02 2.74 16 11 C 0.06 1.15 1.52 -89.71 -0.14 1.01 16 12 O -0.53 -9.40 13.50 -35.23 -0.48 -9.88 16 13 C 0.10 1.49 5.28 -4.04 -0.02 1.47 16 14 N -0.70 -9.31 5.33 -61.00 -0.33 -9.63 16 15 C 0.57 8.11 7.84 -11.97 -0.09 8.01 16 16 O -0.51 -8.68 15.42 5.41 0.08 -8.60 16 17 C 0.20 2.47 6.83 -82.36 -0.56 1.90 16 18 N -0.51 -4.72 9.57 -10.67 -0.10 -4.83 16 19 C 0.35 1.74 12.24 -91.00 -1.11 0.62 16 20 N -0.52 -2.94 5.32 -12.02 -0.06 -3.00 16 21 H 0.43 0.78 8.93 -40.82 -0.36 0.41 16 22 C 0.25 2.80 8.71 -154.20 -1.34 1.45 16 23 N -0.52 -6.52 11.16 -10.92 -0.12 -6.65 16 24 C 0.06 0.73 11.70 -17.59 -0.21 0.52 16 25 C -0.19 -2.57 10.25 -39.45 -0.40 -2.98 16 26 C -0.15 -2.00 6.19 -104.64 -0.65 -2.64 16 27 C 0.14 3.25 6.91 -2.99 -0.02 3.23 16 28 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.05 0.93 8.10 -51.93 -0.42 0.51 16 31 H 0.36 4.89 7.61 45.56 0.35 5.24 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.08 1.29 8.04 -51.93 -0.42 0.88 16 34 H 0.41 4.89 6.70 -40.82 -0.27 4.61 16 35 H 0.22 -0.17 8.06 -52.49 -0.42 -0.59 16 36 H 0.17 1.49 8.06 -52.49 -0.42 1.06 16 37 H 0.15 2.04 7.38 -52.49 -0.39 1.65 16 38 H 0.03 0.77 8.03 -51.93 -0.42 0.36 16 39 H 0.08 1.96 7.16 -51.93 -0.37 1.59 16 LS Contribution 338.76 15.07 5.11 5.11 Total: -1.00 -38.43 338.76 -9.32 -47.75 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -3.54 Total: 6.31 kcal Atomic # 6 Polarization: 13.52 SS G_CDS: -4.83 Total: 8.69 kcal Atomic # 7 Polarization: -65.82 SS G_CDS: -0.64 Total: -66.46 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.39 Total: -18.47 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -38.43 -9.32 -47.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699915608.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.315 kcal (2) G-P(sol) polarization free energy of solvation -38.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds