Wall clock time and date at job start Fri Apr 10 2020 18:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99852 * 2 1 4 4 H 1.48507 * 109.46776 * 240.00490 * 3 2 1 5 5 H 1.48499 * 109.46960 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47195 * 120.00578 * 3 2 1 7 7 C 1.38811 * 120.00197 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00004 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99809 * 359.97438 * 7 2 1 10 10 C 1.47585 * 134.49263 * 180.02562 * 9 7 2 11 11 C 1.53940 * 86.11796 * 155.35538 * 10 9 7 12 12 O 1.42904 * 113.74016 * 269.15475 * 11 10 9 13 13 C 1.53003 * 113.74233 * 137.95404 * 11 10 9 14 14 N 1.46497 * 109.47218 * 184.99878 * 13 11 10 15 15 C 1.34773 * 120.00093 * 180.02562 * 14 13 11 16 16 O 1.21450 * 120.00197 * 359.97438 * 15 14 13 17 17 C 1.48638 * 119.99881 * 180.02562 * 15 14 13 18 18 N 1.33505 * 120.60394 * 359.71283 * 17 15 14 19 19 C 1.30807 * 122.65359 * 180.31194 * 18 17 15 20 20 N 1.34064 * 123.38310 * 359.94797 * 19 18 17 21 21 H 0.96991 * 120.21376 * 180.02562 * 20 19 18 22 22 C 1.36867 * 119.56687 * 0.03025 * 20 19 18 23 23 N 1.31636 * 135.95909 * 179.97438 * 22 20 19 24 24 C 1.33525 * 110.83558 * 180.02562 * 23 22 20 25 25 C 1.36068 * 110.93075 * 0.02562 * 24 23 22 26 26 C 1.39545 * 120.60054 * 179.97438 * 17 15 14 27 27 C 1.47578 * 134.49507 * 359.97438 * 9 7 2 28 28 H 0.96999 * 120.00289 * 359.97438 * 1 2 3 29 29 H 1.09006 * 113.76878 * 41.05012 * 10 9 7 30 30 H 1.09002 * 113.77062 * 269.66047 * 10 9 7 31 31 H 0.96704 * 113.99988 * 178.08164 * 12 11 10 32 32 H 1.09001 * 109.47007 * 64.99789 * 13 11 10 33 33 H 1.08996 * 109.47031 * 304.99767 * 13 11 10 34 34 H 0.97005 * 119.99878 * 359.97438 * 14 13 11 35 35 H 1.07997 * 118.31097 * 179.97438 * 19 18 17 36 36 H 1.07998 * 124.53132 * 180.02562 * 24 23 22 37 37 H 1.07997 * 126.72425 * 180.02562 * 25 24 23 38 38 H 1.09002 * 113.77138 * 90.34900 * 27 9 7 39 39 H 1.08994 * 113.77225 * 318.95078 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6964 -1.2126 5 1 1.2851 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 1.7202 -3.8101 -0.0005 11 6 0.3472 -4.0829 0.6399 12 8 0.3636 -4.0579 2.0686 13 6 -0.3634 -5.3137 0.0730 14 7 -1.7024 -5.4172 0.6582 15 6 -2.5159 -6.4318 0.3042 16 8 -2.1391 -7.2600 -0.5002 17 6 -3.8747 -6.5364 0.8975 18 7 -4.2995 -5.6354 1.7864 19 6 -5.4844 -5.6922 2.3377 20 7 -6.3796 -6.6521 2.0651 21 1 -7.2461 -6.6495 2.5010 22 6 -6.0629 -7.6359 1.1678 23 7 -6.6665 -8.6964 0.6741 24 6 -5.8770 -9.3300 -0.1966 25 6 -4.6798 -8.6949 -0.3186 26 6 -4.7275 -7.5814 0.5396 27 6 -0.1032 -2.7574 0.0004 28 1 -0.4850 0.8400 0.0004 29 1 2.5626 -4.0323 0.6546 30 1 1.8320 -4.2351 -0.9981 31 1 -0.5026 -4.1998 2.4745 32 1 0.2097 -6.2084 0.3165 33 1 -0.4464 -5.2188 -1.0096 34 1 -2.0033 -4.7559 1.3010 35 1 -5.7555 -4.9261 3.0490 36 1 -6.1518 -10.2265 -0.7323 37 1 -3.8550 -8.9875 -0.9514 38 1 -0.5278 -2.8728 -0.9968 39 1 -0.7163 -2.1394 0.6562 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699915608.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:15:31 Heat of formation + Delta-G solvation = 55.624918 kcal Electronic energy + Delta-G solvation = -25680.562184 eV Core-core repulsion = 21818.973854 eV Total energy + Delta-G solvation = -3861.588329 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.127 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.95424 -41.14914 -40.08476 -39.67066 -36.51739 -36.12675 -35.32439 -33.98878 -31.60709 -30.55831 -29.98569 -28.12550 -26.76631 -26.15425 -24.54372 -23.77434 -22.41448 -21.77083 -20.97390 -19.85206 -19.37196 -18.76835 -18.22581 -17.55447 -17.21093 -17.14674 -16.95876 -16.59027 -16.18996 -15.75692 -15.68316 -15.13883 -14.88085 -14.65893 -14.42290 -14.15410 -13.97919 -13.87202 -13.51563 -13.44389 -12.96269 -12.79295 -12.65917 -12.52261 -12.25593 -11.83808 -11.73609 -11.45994 -11.17576 -10.94506 -10.76938 -10.70836 -10.27066 -9.72458 -9.02733 -8.91474 -7.88934 -5.21570 -1.39109 0.38536 1.27154 1.38603 1.46852 1.50196 1.55934 1.72753 2.24960 2.48224 2.52202 2.71547 3.02370 3.06814 3.30448 3.35564 3.49076 3.60937 3.78490 3.89368 4.05115 4.28728 4.36499 4.41890 4.68950 4.73939 4.79539 4.86009 4.96607 5.16347 5.16754 5.19376 5.34654 5.39080 5.51483 5.62208 5.92111 5.94362 6.18644 6.51058 6.80356 6.82278 6.93462 6.95039 7.61208 8.54604 9.27440 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.024366 B = 0.002772 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.877320 B =10099.667753 C =10720.665287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.065 4.065 3 Si 0.979 3.021 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.236 4.236 8 H 0.081 0.919 9 N -0.635 5.635 10 C 0.130 3.870 11 C 0.099 3.901 12 O -0.539 6.539 13 C 0.114 3.886 14 N -0.690 5.690 15 C 0.562 3.438 16 O -0.545 6.545 17 C 0.199 3.801 18 N -0.532 5.532 19 C 0.383 3.617 20 N -0.499 5.499 21 H 0.451 0.549 22 C 0.254 3.746 23 N -0.539 5.539 24 C 0.054 3.946 25 C -0.223 4.223 26 C -0.189 4.189 27 C 0.143 3.857 28 H 0.249 0.751 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.383 0.617 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.418 0.582 35 H 0.289 0.711 36 H 0.187 0.813 37 H 0.140 0.860 38 H 0.026 0.974 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.283 -13.475 7.778 21.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.258 4.258 3 Si 0.807 3.193 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.364 4.364 8 H 0.099 0.901 9 N -0.362 5.362 10 C 0.004 3.996 11 C 0.056 3.944 12 O -0.345 6.345 13 C -0.011 4.011 14 N -0.343 5.343 15 C 0.347 3.653 16 O -0.422 6.422 17 C 0.062 3.938 18 N -0.253 5.253 19 C 0.101 3.899 20 N -0.104 5.104 21 H 0.295 0.705 22 C -0.001 4.001 23 N -0.261 5.261 24 C -0.088 4.088 25 C -0.247 4.247 26 C -0.202 4.202 27 C 0.018 3.982 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.232 0.768 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.256 0.744 35 H 0.304 0.696 36 H 0.204 0.796 37 H 0.157 0.843 38 H 0.043 0.957 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.673 -13.379 7.465 21.214 hybrid contribution -0.238 0.749 -0.394 0.879 sum -14.910 -12.630 7.072 20.781 Atomic orbital electron populations 1.69964 1.06226 1.25647 1.58048 1.25584 0.96664 1.00680 1.02879 0.85153 0.77190 0.78827 0.78138 1.20514 1.21811 1.20370 1.19332 0.90792 0.83285 1.42975 0.90077 1.46023 1.03498 1.00378 1.86273 1.22803 0.94674 0.84114 0.97972 1.23128 0.97380 0.92142 0.81727 1.86570 1.35624 1.95120 1.17205 1.21911 0.81949 0.98386 0.98809 1.45664 1.15158 1.27926 1.45516 1.18100 0.83967 0.81662 0.81595 1.90770 1.75153 1.41800 1.34479 1.21014 0.92816 0.89276 0.90676 1.67875 1.16684 1.27189 1.13512 1.26208 0.82145 0.88438 0.93146 1.41970 1.19606 1.17943 1.30871 0.70535 1.20687 0.91601 0.93072 0.94758 1.69535 1.33712 1.07043 1.15766 1.22999 0.90263 0.99743 0.95777 1.21606 1.00988 0.97470 1.04657 1.21037 0.95430 0.99645 1.04052 1.22837 0.87496 0.91259 0.96653 0.94230 0.92291 0.90924 0.76759 0.89428 0.90231 0.74416 0.69575 0.79575 0.84264 0.95660 0.93024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.30 11.38 21.65 0.25 -56.05 16 2 C -0.06 -3.69 5.50 84.86 0.47 -3.23 16 3 Si 0.98 45.62 29.55 68.60 2.03 47.65 16 4 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.24 -13.34 10.70 84.03 0.90 -12.44 16 8 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 9 N -0.64 -32.55 3.70 -720.32 -2.66 -35.21 16 10 C 0.13 5.16 8.34 86.48 0.72 5.88 16 11 C 0.10 3.47 1.52 -10.15 -0.02 3.45 16 12 O -0.54 -18.44 13.50 -148.98 -2.01 -20.45 16 13 C 0.11 3.28 5.28 86.38 0.46 3.73 16 14 N -0.69 -17.69 5.33 -465.22 -2.48 -20.17 16 15 C 0.56 16.00 7.84 87.02 0.68 16.69 16 16 O -0.55 -18.83 15.42 -3.56 -0.05 -18.89 16 17 C 0.20 4.75 6.83 41.99 0.29 5.04 16 18 N -0.53 -8.30 9.57 -187.67 -1.80 -10.10 16 19 C 0.38 2.04 12.24 180.48 2.21 4.25 16 20 N -0.50 -3.87 5.32 -191.95 -1.02 -4.89 16 21 H 0.45 -0.31 8.93 -92.71 -0.83 -1.14 16 22 C 0.25 5.23 8.71 136.28 1.19 6.41 16 23 N -0.54 -13.23 11.16 -188.45 -2.10 -15.34 16 24 C 0.05 1.33 11.70 83.93 0.98 2.32 16 25 C -0.22 -6.19 10.25 22.36 0.23 -5.96 16 26 C -0.19 -4.92 6.19 -19.88 -0.12 -5.04 16 27 C 0.14 6.50 6.91 86.47 0.60 7.10 16 28 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 29 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 30 H 0.07 2.59 8.10 -2.39 -0.02 2.57 16 31 H 0.38 9.56 7.61 -74.05 -0.56 9.00 16 32 H 0.09 2.38 8.14 -2.39 -0.02 2.37 16 33 H 0.08 2.41 8.04 -2.39 -0.02 2.39 16 34 H 0.42 9.33 6.70 -92.70 -0.62 8.71 16 35 H 0.29 -2.45 8.06 -2.91 -0.02 -2.47 16 36 H 0.19 3.41 8.06 -2.91 -0.02 3.38 16 37 H 0.14 4.07 7.38 -2.91 -0.02 4.05 16 38 H 0.03 1.19 8.03 -2.39 -0.02 1.17 16 39 H 0.05 2.61 7.16 -2.39 -0.02 2.59 16 Total: -1.00 -86.83 338.76 -2.15 -88.98 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -0.87 Total: 16.27 kcal Atomic # 6 Polarization: 19.62 SS G_CDS: 8.58 Total: 28.20 kcal Atomic # 7 Polarization: -131.94 SS G_CDS: -9.82 Total: -141.75 kcal Atomic # 8 Polarization: -37.27 SS G_CDS: -2.07 Total: -39.34 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -86.83 -2.15 -88.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699915608.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.601 kcal (2) G-P(sol) polarization free energy of solvation -86.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds