Wall clock time and date at job start Fri Apr 10 2020 18:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86802 * 119.99724 * 2 1 4 4 H 1.48496 * 109.47593 * 274.99065 * 3 2 1 5 5 H 1.48507 * 109.47000 * 34.99475 * 3 2 1 6 6 H 1.48501 * 109.46937 * 154.98972 * 3 2 1 7 7 C 1.38807 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00211 * 185.06498 * 7 2 1 9 9 N 1.36939 * 119.99564 * 5.05821 * 7 2 1 10 10 C 1.47585 * 134.48667 * 173.48500 * 9 7 2 11 11 C 1.53952 * 86.11409 * 155.35757 * 10 9 7 12 12 O 1.42907 * 113.73977 * 269.15232 * 11 10 9 13 13 C 1.52997 * 113.74094 * 137.95498 * 11 10 9 14 14 N 1.46500 * 109.47145 * 186.92614 * 13 11 10 15 15 C 1.34780 * 120.00119 * 180.02562 * 14 13 11 16 16 O 1.21280 * 119.99880 * 359.97438 * 15 14 13 17 17 C 1.50699 * 119.99834 * 179.97438 * 15 14 13 18 18 H 1.09007 * 115.55315 * 34.27352 * 17 15 14 19 19 C 1.52994 * 117.50103 * 248.60379 * 17 15 14 20 20 C 1.52992 * 60.00248 * 252.49066 * 19 17 15 21 21 H 1.08999 * 117.50415 * 107.48652 * 20 19 17 22 22 C 1.50700 * 117.49630 * 252.51058 * 20 19 17 23 23 C 1.38676 * 120.41861 * 188.32658 * 22 20 19 24 24 C 1.38627 * 118.42419 * 179.78230 * 23 22 20 25 25 C 1.38237 * 119.15626 * 0.51383 * 24 23 22 26 26 N 1.31846 * 120.76141 * 359.72810 * 25 24 23 27 27 C 1.31884 * 121.73512 * 359.97438 * 26 25 24 28 28 C 1.47810 * 134.46066 * 353.34973 * 9 7 2 29 29 H 0.97006 * 120.00048 * 359.97438 * 1 2 3 30 30 H 1.08996 * 113.77242 * 41.05926 * 10 9 7 31 31 H 1.08999 * 113.76965 * 269.65703 * 10 9 7 32 32 H 0.96702 * 113.99703 * 178.07524 * 12 11 10 33 33 H 1.08998 * 109.47655 * 66.91963 * 13 11 10 34 34 H 1.09005 * 109.46894 * 306.91711 * 13 11 10 35 35 H 0.97001 * 119.99848 * 359.97438 * 14 13 11 36 36 H 1.09008 * 117.49782 * 359.97438 * 19 17 15 37 37 H 1.08998 * 117.50159 * 144.99441 * 19 17 15 38 38 H 1.08003 * 120.78704 * 0.02562 * 23 22 20 39 39 H 1.07999 * 120.42806 * 180.26668 * 24 23 22 40 40 H 1.08003 * 119.61552 * 179.70508 * 25 24 23 41 41 H 1.07996 * 119.62671 * 179.97438 * 27 26 25 42 42 H 1.08992 * 113.76745 * 90.38198 * 28 9 7 43 43 H 1.09004 * 113.83392 * 318.91481 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3922 2.1075 -1.3947 5 1 1.5043 2.6199 0.8030 6 1 3.5965 1.4121 0.5919 7 6 2.0103 -1.2021 -0.0005 8 1 3.0872 -1.2039 0.0820 9 7 1.3296 -2.3856 -0.1056 10 6 1.7288 -3.7983 -0.2581 11 6 0.3711 -4.1419 0.3812 12 8 0.4191 -4.2614 1.8044 13 6 -0.3478 -5.3129 -0.2918 14 7 -1.6906 -5.4534 0.2770 15 6 -2.5116 -6.4263 -0.1658 16 8 -2.1389 -7.1851 -1.0353 17 6 -3.8926 -6.5711 0.4197 18 1 -4.3814 -5.6401 0.7073 19 6 -4.1712 -7.8086 1.2751 20 6 -4.7771 -7.6944 -0.1251 21 1 -4.3602 -8.3288 -0.9073 22 6 -6.2573 -7.4291 -0.2230 23 6 -6.9009 -7.4847 -1.4502 24 6 -8.2644 -7.2381 -1.4919 25 6 -8.9305 -6.9364 -0.3188 26 7 -8.2849 -6.8873 0.8297 27 6 -6.9895 -7.1220 0.9080 28 6 -0.1001 -2.7608 -0.1093 29 1 -0.4850 0.8401 0.0004 30 1 2.5861 -4.0810 0.3527 31 1 1.8197 -4.1196 -1.2957 32 1 -0.4375 -4.4482 2.2125 33 1 0.2159 -6.2305 -0.1235 34 1 -0.4248 -5.1249 -1.3627 35 1 -1.9886 -4.8466 0.9727 36 1 -3.3555 -8.5183 1.4141 37 1 -4.8430 -7.6919 2.1254 38 1 -6.3536 -7.7186 -2.3514 39 1 -8.7989 -7.2772 -2.4296 40 1 -9.9919 -6.7382 -0.3435 41 1 -6.4948 -7.0721 1.8667 42 1 -0.5475 -2.7768 -1.1031 43 1 -0.7001 -2.2168 0.6201 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754775300.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:15:47 Heat of formation + Delta-G solvation = 38.827370 kcal Electronic energy + Delta-G solvation = -25404.938482 eV Core-core repulsion = 21646.162100 eV Total energy + Delta-G solvation = -3758.776382 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.85224 -39.92817 -38.79846 -36.87281 -34.90110 -34.04013 -32.75051 -32.01222 -31.21077 -28.77483 -26.44209 -25.08047 -24.80381 -24.20477 -23.44229 -21.84488 -21.18344 -20.27353 -19.35424 -18.01615 -17.57450 -16.79392 -16.45863 -16.33984 -15.68966 -15.43498 -15.23077 -14.89233 -14.52912 -14.27121 -14.14246 -13.95106 -13.52892 -13.37026 -13.23118 -12.79225 -12.71794 -12.40773 -12.28863 -12.09125 -11.81423 -11.40371 -11.10096 -10.97866 -10.84428 -10.77356 -10.45463 -10.08603 -10.04690 -9.78685 -9.75584 -9.54732 -9.26621 -9.14114 -8.98261 -8.84072 -6.91814 -5.81366 -3.12195 0.70712 0.94298 2.40061 3.02112 3.35088 3.38188 3.43268 3.45281 3.71811 4.01435 4.27315 4.36132 4.41284 4.47398 4.49581 4.56609 4.61917 4.71692 4.85360 4.93050 5.00578 5.15757 5.17228 5.25304 5.31967 5.45795 5.54445 5.60629 5.66480 5.70963 5.82285 5.97760 5.99811 6.26467 6.34227 6.38128 6.50039 6.53409 6.98719 7.10070 7.43689 7.47663 7.63592 7.92618 8.07647 8.17966 9.00541 9.67006 10.53532 11.36577 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018213 B = 0.002439 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.979741 B =11479.602875 C =12355.506893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.219 4.219 8 H 0.082 0.918 9 N -0.603 5.603 10 C 0.136 3.864 11 C 0.063 3.937 12 O -0.527 6.527 13 C 0.103 3.897 14 N -0.718 5.718 15 C 0.544 3.456 16 O -0.543 6.543 17 C -0.176 4.176 18 H 0.128 0.872 19 C -0.142 4.142 20 C -0.082 4.082 21 H 0.130 0.870 22 C -0.103 4.103 23 C -0.066 4.066 24 C -0.169 4.169 25 C 0.092 3.908 26 N -0.482 5.482 27 C 0.098 3.902 28 C 0.148 3.852 29 H 0.253 0.747 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.362 0.638 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.401 0.599 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.155 0.845 41 H 0.156 0.844 42 H 0.036 0.964 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.449 -17.281 0.646 23.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.347 4.347 8 H 0.099 0.901 9 N -0.329 5.329 10 C 0.009 3.991 11 C 0.020 3.980 12 O -0.330 6.330 13 C -0.022 4.022 14 N -0.369 5.369 15 C 0.330 3.670 16 O -0.420 6.420 17 C -0.197 4.197 18 H 0.146 0.854 19 C -0.179 4.179 20 C -0.101 4.101 21 H 0.148 0.852 22 C -0.105 4.105 23 C -0.092 4.092 24 C -0.189 4.189 25 C -0.065 4.065 26 N -0.190 5.190 27 C -0.059 4.059 28 C 0.022 3.978 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.208 0.792 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.235 0.765 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.173 0.827 41 H 0.173 0.827 42 H 0.054 0.946 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.930 -17.113 0.705 22.721 hybrid contribution 0.141 1.093 -0.602 1.256 sum -14.789 -16.020 0.104 21.803 Atomic orbital electron populations 1.69819 1.05073 1.25377 1.56564 1.24808 0.95722 0.97572 1.02327 0.86092 0.78764 0.83409 0.77488 1.21617 1.21690 1.20503 1.19005 0.90778 0.81773 1.43133 0.90062 1.45700 1.01922 1.00578 1.84667 1.22554 0.93500 0.86392 0.96612 1.23784 0.99192 0.93589 0.81426 1.86620 1.34043 1.94169 1.18170 1.22072 0.81596 0.99518 0.99001 1.45854 1.15738 1.33563 1.41767 1.19504 0.85269 0.80291 0.81969 1.90695 1.76238 1.43811 1.31289 1.22391 0.94978 0.96165 1.06165 0.85431 1.23150 1.03129 0.97837 0.93815 1.20958 0.89117 1.00859 0.99199 0.85222 1.20145 0.94767 1.01006 0.94567 1.21497 0.94417 0.95541 0.97696 1.22175 0.95133 1.01344 1.00248 1.22805 1.00411 0.95448 0.87864 1.67714 1.09640 1.12966 1.28706 1.22714 0.89758 0.95080 0.98305 1.22866 0.88807 0.87941 0.98223 0.93669 0.92663 0.93244 0.79194 0.91089 0.90253 0.76463 0.87337 0.87228 0.84524 0.84594 0.82731 0.82668 0.94649 0.90824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.12 11.51 55.49 0.64 -26.48 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 3 Si 0.91 22.21 29.56 -169.99 -5.02 17.19 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.22 -6.21 10.70 -15.06 -0.16 -6.37 16 8 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 9 N -0.60 -15.48 3.70 -177.58 -0.66 -16.13 16 10 C 0.14 2.78 8.34 -2.96 -0.02 2.76 16 11 C 0.06 1.12 1.49 -89.69 -0.13 0.99 16 12 O -0.53 -9.30 13.50 -35.23 -0.48 -9.77 16 13 C 0.10 1.52 5.26 -4.04 -0.02 1.50 16 14 N -0.72 -8.85 5.33 -60.29 -0.32 -9.17 16 15 C 0.54 6.90 7.61 -10.98 -0.08 6.81 16 16 O -0.54 -8.77 16.26 5.56 0.09 -8.68 16 17 C -0.18 -1.62 5.83 -91.78 -0.53 -2.15 16 18 H 0.13 1.03 8.14 -51.93 -0.42 0.61 16 19 C -0.14 -1.03 9.57 -26.74 -0.26 -1.29 16 20 C -0.08 -0.72 5.58 -91.78 -0.51 -1.23 16 21 H 0.13 1.27 7.67 -51.93 -0.40 0.87 16 22 C -0.10 -0.90 5.62 -104.48 -0.59 -1.49 16 23 C -0.07 -0.54 9.89 -39.28 -0.39 -0.92 16 24 C -0.17 -1.23 10.11 -39.44 -0.40 -1.63 16 25 C 0.09 0.75 11.18 -17.55 -0.20 0.55 16 26 N -0.48 -4.89 10.36 -13.25 -0.14 -5.02 16 27 C 0.10 0.88 10.47 -17.55 -0.18 0.70 16 28 C 0.15 3.32 6.84 -2.84 -0.02 3.30 16 29 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.05 0.93 8.10 -51.93 -0.42 0.51 16 32 H 0.36 4.69 7.73 45.56 0.35 5.04 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.08 1.25 8.09 -51.93 -0.42 0.83 16 35 H 0.40 4.15 7.42 -40.82 -0.30 3.85 16 36 H 0.11 0.81 8.14 -51.92 -0.42 0.39 16 37 H 0.11 0.58 6.20 -51.93 -0.32 0.25 16 38 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 39 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 40 H 0.16 0.86 8.06 -52.48 -0.42 0.43 16 41 H 0.16 1.07 6.04 -52.49 -0.32 0.76 16 42 H 0.04 0.82 8.06 -51.93 -0.42 0.40 16 43 H 0.07 1.82 7.37 -51.93 -0.38 1.44 16 LS Contribution 365.09 15.07 5.50 5.50 Total: -1.00 -35.67 365.09 -9.12 -44.79 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -5.14 Total: 6.58 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -3.60 Total: 1.20 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: -0.48 Total: -56.81 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.39 Total: -18.46 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.67 -9.12 -44.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754775300.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.618 kcal (2) G-P(sol) polarization free energy of solvation -35.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds