Wall clock time and date at job start Fri Apr 10 2020 18:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86802 * 119.99724 * 2 1 4 4 H 1.48496 * 109.47593 * 274.99065 * 3 2 1 5 5 H 1.48507 * 109.47000 * 34.99475 * 3 2 1 6 6 H 1.48501 * 109.46937 * 154.98972 * 3 2 1 7 7 C 1.38807 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00211 * 185.06498 * 7 2 1 9 9 N 1.36939 * 119.99564 * 5.05821 * 7 2 1 10 10 C 1.47585 * 134.48667 * 173.48500 * 9 7 2 11 11 C 1.53952 * 86.11409 * 155.35757 * 10 9 7 12 12 O 1.42907 * 113.73977 * 269.15232 * 11 10 9 13 13 C 1.52997 * 113.74094 * 137.95498 * 11 10 9 14 14 N 1.46500 * 109.47145 * 186.92614 * 13 11 10 15 15 C 1.34780 * 120.00119 * 180.02562 * 14 13 11 16 16 O 1.21280 * 119.99880 * 359.97438 * 15 14 13 17 17 C 1.50699 * 119.99834 * 179.97438 * 15 14 13 18 18 H 1.09007 * 115.55315 * 34.27352 * 17 15 14 19 19 C 1.52994 * 117.50103 * 248.60379 * 17 15 14 20 20 C 1.52992 * 60.00248 * 252.49066 * 19 17 15 21 21 H 1.08999 * 117.50415 * 107.48652 * 20 19 17 22 22 C 1.50700 * 117.49630 * 252.51058 * 20 19 17 23 23 C 1.38676 * 120.41861 * 188.32658 * 22 20 19 24 24 C 1.38627 * 118.42419 * 179.78230 * 23 22 20 25 25 C 1.38237 * 119.15626 * 0.51383 * 24 23 22 26 26 N 1.31846 * 120.76141 * 359.72810 * 25 24 23 27 27 C 1.31884 * 121.73512 * 359.97438 * 26 25 24 28 28 C 1.47810 * 134.46066 * 353.34973 * 9 7 2 29 29 H 0.97006 * 120.00048 * 359.97438 * 1 2 3 30 30 H 1.08996 * 113.77242 * 41.05926 * 10 9 7 31 31 H 1.08999 * 113.76965 * 269.65703 * 10 9 7 32 32 H 0.96702 * 113.99703 * 178.07524 * 12 11 10 33 33 H 1.08998 * 109.47655 * 66.91963 * 13 11 10 34 34 H 1.09005 * 109.46894 * 306.91711 * 13 11 10 35 35 H 0.97001 * 119.99848 * 359.97438 * 14 13 11 36 36 H 1.09008 * 117.49782 * 359.97438 * 19 17 15 37 37 H 1.08998 * 117.50159 * 144.99441 * 19 17 15 38 38 H 1.08003 * 120.78704 * 0.02562 * 23 22 20 39 39 H 1.07999 * 120.42806 * 180.26668 * 24 23 22 40 40 H 1.08003 * 119.61552 * 179.70508 * 25 24 23 41 41 H 1.07996 * 119.62671 * 179.97438 * 27 26 25 42 42 H 1.08992 * 113.76745 * 90.38198 * 28 9 7 43 43 H 1.09004 * 113.83392 * 318.91481 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3922 2.1075 -1.3947 5 1 1.5043 2.6199 0.8030 6 1 3.5965 1.4121 0.5919 7 6 2.0103 -1.2021 -0.0005 8 1 3.0872 -1.2039 0.0820 9 7 1.3296 -2.3856 -0.1056 10 6 1.7288 -3.7983 -0.2581 11 6 0.3711 -4.1419 0.3812 12 8 0.4191 -4.2614 1.8044 13 6 -0.3478 -5.3129 -0.2918 14 7 -1.6906 -5.4534 0.2770 15 6 -2.5116 -6.4263 -0.1658 16 8 -2.1389 -7.1851 -1.0353 17 6 -3.8926 -6.5711 0.4197 18 1 -4.3814 -5.6401 0.7073 19 6 -4.1712 -7.8086 1.2751 20 6 -4.7771 -7.6944 -0.1251 21 1 -4.3602 -8.3288 -0.9073 22 6 -6.2573 -7.4291 -0.2230 23 6 -6.9009 -7.4847 -1.4502 24 6 -8.2644 -7.2381 -1.4919 25 6 -8.9305 -6.9364 -0.3188 26 7 -8.2849 -6.8873 0.8297 27 6 -6.9895 -7.1220 0.9080 28 6 -0.1001 -2.7608 -0.1093 29 1 -0.4850 0.8401 0.0004 30 1 2.5861 -4.0810 0.3527 31 1 1.8197 -4.1196 -1.2957 32 1 -0.4375 -4.4482 2.2125 33 1 0.2159 -6.2305 -0.1235 34 1 -0.4248 -5.1249 -1.3627 35 1 -1.9886 -4.8466 0.9727 36 1 -3.3555 -8.5183 1.4141 37 1 -4.8430 -7.6919 2.1254 38 1 -6.3536 -7.7186 -2.3514 39 1 -8.7989 -7.2772 -2.4296 40 1 -9.9919 -6.7382 -0.3435 41 1 -6.4948 -7.0721 1.8667 42 1 -0.5475 -2.7768 -1.1031 43 1 -0.7001 -2.2168 0.6201 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754775300.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:15:46 Heat of formation + Delta-G solvation = 12.126002 kcal Electronic energy + Delta-G solvation = -25406.096340 eV Core-core repulsion = 21646.162100 eV Total energy + Delta-G solvation = -3759.934241 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.60154 -40.97626 -40.16662 -37.68443 -36.46152 -35.26973 -34.02320 -33.35759 -31.84450 -30.34737 -28.06318 -26.78377 -25.57003 -25.08481 -24.23101 -23.41617 -21.88393 -21.28987 -20.88731 -19.05075 -18.65357 -18.21251 -17.47485 -17.29039 -17.07251 -16.49136 -16.33869 -16.13660 -15.73297 -15.58164 -15.18721 -14.98575 -14.80613 -14.61684 -14.38262 -13.95752 -13.91992 -13.61269 -13.41808 -13.03779 -12.96556 -12.86992 -12.67832 -12.57518 -12.22291 -12.07828 -11.78556 -11.54142 -11.43024 -10.97442 -10.93711 -10.73910 -10.65194 -10.38180 -10.16266 -9.76715 -8.94353 -7.94402 -5.26114 0.10562 0.33605 1.44452 1.46044 1.46147 1.55081 2.03358 2.45096 2.67471 3.04141 3.06544 3.24463 3.33563 3.38620 3.58079 3.65061 3.70530 3.82431 3.88740 3.95060 4.03304 4.10778 4.18010 4.35624 4.38639 4.59186 4.67718 4.71718 4.77449 4.78723 4.91801 4.94810 4.96831 5.07690 5.16388 5.23289 5.28460 5.31422 5.37758 5.47956 5.77479 5.89491 6.44823 6.83148 6.89383 7.03016 7.17031 7.57058 8.51057 9.22951 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018213 B = 0.002439 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.979741 B =11479.602875 C =12355.506893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.066 4.066 3 Si 0.978 3.022 4 H -0.287 1.287 5 H -0.293 1.293 6 H -0.268 1.268 7 C -0.234 4.234 8 H 0.082 0.918 9 N -0.637 5.637 10 C 0.129 3.871 11 C 0.099 3.901 12 O -0.540 6.540 13 C 0.118 3.882 14 N -0.712 5.712 15 C 0.544 3.456 16 O -0.580 6.580 17 C -0.181 4.181 18 H 0.142 0.858 19 C -0.121 4.121 20 C -0.084 4.084 21 H 0.116 0.884 22 C -0.110 4.110 23 C -0.080 4.080 24 C -0.167 4.167 25 C 0.081 3.919 26 N -0.510 5.510 27 C 0.089 3.911 28 C 0.147 3.853 29 H 0.249 0.751 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.384 0.616 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.412 0.588 36 H 0.109 0.891 37 H 0.135 0.865 38 H 0.145 0.855 39 H 0.161 0.839 40 H 0.177 0.823 41 H 0.172 0.828 42 H 0.026 0.974 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.998 -18.157 1.154 24.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.259 4.259 3 Si 0.806 3.194 4 H -0.214 1.214 5 H -0.219 1.219 6 H -0.193 1.193 7 C -0.363 4.363 8 H 0.100 0.900 9 N -0.364 5.364 10 C 0.003 3.997 11 C 0.057 3.943 12 O -0.346 6.346 13 C -0.007 4.007 14 N -0.364 5.364 15 C 0.332 3.668 16 O -0.460 6.460 17 C -0.202 4.202 18 H 0.159 0.841 19 C -0.158 4.158 20 C -0.103 4.103 21 H 0.134 0.866 22 C -0.112 4.112 23 C -0.105 4.105 24 C -0.187 4.187 25 C -0.076 4.076 26 N -0.219 5.219 27 C -0.067 4.067 28 C 0.021 3.979 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.233 0.767 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.248 0.752 36 H 0.127 0.873 37 H 0.153 0.847 38 H 0.163 0.837 39 H 0.179 0.821 40 H 0.194 0.806 41 H 0.189 0.811 42 H 0.043 0.957 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -15.487 -18.018 1.239 23.791 hybrid contribution 0.295 1.298 -0.776 1.541 sum -15.192 -16.720 0.463 22.595 Atomic orbital electron populations 1.69988 1.06329 1.25646 1.57927 1.25633 0.96669 1.00794 1.02811 0.85064 0.77887 0.79140 0.77280 1.21420 1.21930 1.19305 1.19371 0.91223 0.83323 1.42347 0.90046 1.46100 1.03527 1.01733 1.85014 1.22796 0.94999 0.83792 0.98063 1.23130 0.97202 0.92263 0.81740 1.86571 1.36098 1.94092 1.17863 1.21725 0.82716 0.98151 0.98100 1.45765 1.14867 1.33893 1.41891 1.20038 0.86230 0.79330 0.81242 1.90681 1.77196 1.45164 1.32971 1.22338 0.92922 0.97527 1.07370 0.84055 1.23285 1.02871 0.95910 0.93752 1.20874 0.89096 1.00395 0.99976 0.86589 1.20171 0.94613 1.01472 0.94896 1.21777 0.95153 0.95610 0.98007 1.22457 0.94857 1.00230 1.01108 1.23253 1.01551 0.95050 0.87728 1.67732 1.10300 1.14016 1.29824 1.22972 0.89652 0.95034 0.99053 1.22803 0.87329 0.90575 0.97154 0.94223 0.92353 0.91168 0.76672 0.90065 0.91103 0.75188 0.87310 0.84724 0.83732 0.82094 0.80620 0.81091 0.95667 0.93579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.00 11.51 21.65 0.25 -56.75 16 2 C -0.07 -3.79 5.50 84.86 0.47 -3.32 16 3 Si 0.98 46.05 29.56 68.60 2.03 48.08 16 4 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 5 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.23 -13.38 10.70 84.03 0.90 -12.48 16 8 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 9 N -0.64 -32.93 3.70 -719.57 -2.66 -35.60 16 10 C 0.13 5.17 8.34 86.49 0.72 5.89 16 11 C 0.10 3.46 1.49 -10.13 -0.02 3.45 16 12 O -0.54 -18.23 13.50 -148.98 -2.01 -20.24 16 13 C 0.12 3.34 5.26 86.38 0.45 3.79 16 14 N -0.71 -16.53 5.33 -463.06 -2.47 -19.00 16 15 C 0.54 13.12 7.61 87.66 0.67 13.79 16 16 O -0.58 -18.37 16.26 -3.03 -0.05 -18.42 16 17 C -0.18 -3.02 5.83 -11.54 -0.07 -3.09 16 18 H 0.14 1.99 8.14 -2.38 -0.02 1.97 16 19 C -0.12 -1.49 9.57 30.59 0.29 -1.19 16 20 C -0.08 -1.37 5.58 -11.54 -0.06 -1.44 16 21 H 0.12 2.23 7.67 -2.39 -0.02 2.22 16 22 C -0.11 -1.78 5.62 -19.77 -0.11 -1.89 16 23 C -0.08 -1.21 9.89 22.47 0.22 -0.99 16 24 C -0.17 -2.15 10.11 22.36 0.23 -1.93 16 25 C 0.08 1.20 11.18 84.69 0.95 2.14 16 26 N -0.51 -9.70 10.36 -195.84 -2.03 -11.73 16 27 C 0.09 1.47 10.47 84.67 0.89 2.35 16 28 C 0.15 6.70 6.84 86.44 0.59 7.29 16 29 H 0.25 14.48 8.31 -92.70 -0.77 13.71 16 30 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.07 2.55 8.10 -2.39 -0.02 2.53 16 32 H 0.38 9.16 7.73 -74.06 -0.57 8.59 16 33 H 0.08 2.20 8.14 -2.39 -0.02 2.19 16 34 H 0.07 2.17 8.09 -2.38 -0.02 2.15 16 35 H 0.41 7.83 7.42 -92.71 -0.69 7.14 16 36 H 0.11 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.13 0.98 6.20 -2.39 -0.01 0.97 16 38 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 39 H 0.16 1.15 8.06 -2.91 -0.02 1.12 16 40 H 0.18 1.64 8.06 -2.91 -0.02 1.61 16 41 H 0.17 2.00 6.04 -2.91 -0.02 1.98 16 42 H 0.03 1.20 8.06 -2.39 -0.02 1.18 16 43 H 0.05 2.33 7.37 -2.38 -0.02 2.32 16 Total: -1.00 -77.59 365.09 -1.04 -78.62 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: -0.21 Total: 22.65 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: 6.12 Total: 12.38 kcal Atomic # 7 Polarization: -116.17 SS G_CDS: -6.91 Total: -123.08 kcal Atomic # 8 Polarization: -36.60 SS G_CDS: -2.06 Total: -38.66 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -77.59 -1.04 -78.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754775300.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.748 kcal (2) G-P(sol) polarization free energy of solvation -77.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds