Wall clock time and date at job start Fri Apr 10 2020 18:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46505 * 109.47341 * 2 1 4 4 C 1.46501 * 120.00047 * 274.00180 * 3 2 1 5 5 C 1.50697 * 109.47250 * 280.84148 * 4 3 2 6 6 H 1.08000 * 119.99849 * 3.39744 * 5 4 3 7 7 C 1.37875 * 120.00148 * 183.39823 * 5 4 3 8 8 N 1.31518 * 119.99885 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99987 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47091 * 90.00097 * 9 7 5 11 11 H 1.48494 * 109.47361 * 209.99720 * 9 7 5 12 12 H 1.48498 * 109.47010 * 330.00336 * 9 7 5 13 13 S 1.65595 * 120.00014 * 94.00209 * 3 2 1 14 14 O 1.42097 * 106.40514 * 336.31067 * 13 3 2 15 15 O 1.42101 * 106.40356 * 203.39466 * 13 3 2 16 16 N 1.65600 * 107.22184 * 89.85188 * 13 3 2 17 17 C 1.46501 * 119.99790 * 65.48174 * 16 13 3 18 18 C 1.50694 * 109.47005 * 164.40804 * 17 16 13 19 19 N 1.30520 * 126.34471 * 90.02496 * 18 17 16 20 20 N 1.28596 * 109.67292 * 179.97438 * 19 18 17 21 21 C 1.30526 * 109.67327 * 0.02562 * 20 19 18 22 22 C 1.50696 * 126.34659 * 179.97438 * 21 20 19 23 23 N 1.35487 * 107.30345 * 359.77320 * 21 20 19 24 24 C 1.46508 * 126.98010 * 180.22597 * 23 21 20 25 25 H 1.08997 * 109.47338 * 185.05005 * 1 2 3 26 26 H 1.08998 * 109.47619 * 305.05564 * 1 2 3 27 27 H 1.09006 * 109.47141 * 65.05088 * 1 2 3 28 28 H 1.09004 * 109.47112 * 239.99873 * 2 1 3 29 29 H 1.08996 * 109.47293 * 119.99758 * 2 1 3 30 30 H 1.09003 * 109.46858 * 40.83642 * 4 3 2 31 31 H 1.08994 * 109.47306 * 160.83704 * 4 3 2 32 32 H 0.97003 * 119.99737 * 180.02562 * 8 7 5 33 33 H 0.96991 * 120.00130 * 245.48719 * 16 13 3 34 34 H 1.09001 * 109.46858 * 44.40588 * 17 16 13 35 35 H 1.09001 * 109.47234 * 284.41164 * 17 16 13 36 36 H 1.08998 * 109.46931 * 89.97541 * 22 21 20 37 37 H 1.09003 * 109.47147 * 209.97654 * 22 21 20 38 38 H 1.09000 * 109.47361 * 329.97897 * 22 21 20 39 39 H 1.08998 * 109.46592 * 270.15465 * 24 23 21 40 40 H 1.09000 * 109.46578 * 30.15173 * 24 23 21 41 41 H 1.09001 * 109.47054 * 150.15454 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1791 2.1014 -1.2656 5 6 3.4606 1.6692 -1.9303 6 1 4.0646 0.8925 -1.4849 7 6 3.8621 2.2653 -3.1069 8 7 4.9803 1.8877 -3.6872 9 14 2.8170 3.6082 -3.8776 10 1 3.2436 4.9301 -3.3524 11 1 2.9877 3.5831 -5.3525 12 1 1.3891 3.3790 -3.5404 13 16 2.3887 2.1285 1.4306 14 8 1.6441 1.4580 2.4381 15 8 2.2895 3.5256 1.1910 16 7 3.9850 1.8203 1.7458 17 6 5.0231 2.3599 0.8641 18 6 6.3608 2.2751 1.5527 19 7 7.1976 1.2750 1.4969 20 7 8.2387 1.5417 2.2031 21 6 8.1132 2.7238 2.7419 22 6 9.1124 3.4068 3.6398 23 7 6.9200 3.2249 2.3408 24 6 6.3491 4.5282 2.6903 25 1 -0.3634 -1.0236 0.0905 26 1 -0.3634 0.5902 0.8412 27 1 -0.3634 0.4335 -0.9318 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.3368 1.8776 -1.9204 31 1 2.2139 3.1734 -1.0718 32 1 5.2629 2.3073 -4.5149 33 1 4.2326 1.2826 2.5141 34 1 4.7985 3.4012 0.6333 35 1 5.0524 1.7813 -0.0592 36 1 9.8033 3.9935 3.0344 37 1 8.5879 4.0646 4.3330 38 1 9.6687 2.6563 4.2015 39 1 5.7575 4.4332 3.6008 40 1 7.1537 5.2454 2.8528 41 1 5.7115 4.8753 1.8772 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771689514.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:15:56 Heat of formation + Delta-G solvation = 4.198969 kcal Electronic energy + Delta-G solvation = -25904.225939 eV Core-core repulsion = 22175.851565 eV Total energy + Delta-G solvation = -3728.374375 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 317.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.03667 -36.89846 -36.25607 -35.50065 -35.42657 -34.88384 -32.70079 -32.10260 -30.27487 -28.45576 -27.41747 -27.20494 -25.57638 -22.97437 -21.63618 -21.18149 -20.81123 -19.02851 -17.56562 -17.12632 -16.95134 -16.68719 -16.46957 -15.81611 -15.18667 -14.61943 -14.33141 -14.06305 -13.82162 -13.67563 -13.49984 -13.15159 -12.99684 -12.78676 -12.72031 -12.54039 -12.49808 -12.13309 -12.00206 -11.76907 -11.68011 -11.55671 -11.30733 -11.19347 -11.01721 -10.56543 -10.44538 -10.22507 -10.18275 -10.12697 -9.70047 -9.20519 -8.97511 -8.70845 -8.19628 -6.20824 -4.23341 1.03200 1.83575 2.47906 2.93415 3.20753 3.28880 3.32266 3.43332 3.97392 4.27279 4.29295 4.41005 4.53274 4.80955 4.91026 4.93228 5.09883 5.18712 5.21805 5.27061 5.32094 5.52786 5.60690 5.68541 5.75695 5.91537 5.99267 6.09231 6.22819 6.25381 6.35652 6.49866 6.59082 6.80638 6.89201 7.03711 7.10286 7.35945 7.50073 8.34705 8.82148 8.87613 9.38406 10.90113 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.011850 B = 0.005618 C = 0.004466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.392916 B = 4982.953284 C = 6268.039094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.129 3.871 3 N -0.984 5.984 4 C 0.212 3.788 5 C -0.549 4.549 6 H 0.086 0.914 7 C 0.079 3.921 8 N -0.885 5.885 9 Si 0.866 3.134 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.263 1.263 13 S 2.789 3.211 14 O -0.991 6.991 15 O -0.983 6.983 16 N -1.126 6.126 17 C 0.204 3.796 18 C 0.177 3.823 19 N -0.271 5.271 20 N -0.295 5.295 21 C 0.163 3.837 22 C -0.063 4.063 23 N -0.470 5.470 24 C 0.067 3.933 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.036 0.964 31 H 0.043 0.957 32 H 0.266 0.734 33 H 0.411 0.589 34 H 0.093 0.907 35 H 0.135 0.865 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.034 4.705 12.712 13.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.003 3.997 3 N -0.825 5.825 4 C 0.088 3.912 5 C -0.588 4.588 6 H 0.104 0.896 7 C -0.125 4.125 8 N -0.522 5.522 9 Si 0.693 3.307 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.188 1.188 13 S 2.796 3.204 14 O -0.975 6.975 15 O -0.967 6.967 16 N -0.885 5.885 17 C 0.076 3.924 18 C -0.091 4.091 19 N -0.111 5.111 20 N -0.137 5.137 21 C -0.104 4.104 22 C -0.122 4.122 23 N -0.161 5.161 24 C -0.076 4.076 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.105 0.895 29 H 0.085 0.915 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.244 0.756 34 H 0.111 0.889 35 H 0.153 0.847 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.112 0.888 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.092 4.071 12.536 13.226 hybrid contribution -0.548 1.563 -0.222 1.671 sum 0.544 5.633 12.315 13.553 Atomic orbital electron populations 1.22209 0.96889 1.01620 1.02165 1.21039 0.93470 0.82257 1.02944 1.57485 1.78734 1.23420 1.22896 1.19612 0.98335 0.92171 0.81033 1.21448 1.05976 1.23011 1.08334 0.89570 1.24859 0.94659 0.96459 0.96534 1.69907 1.21647 1.41924 1.18715 0.87003 0.81787 0.82978 0.78974 1.19823 1.21024 1.18770 1.01664 0.72382 0.73635 0.72708 1.93572 1.69188 1.76403 1.58373 1.93557 1.86038 1.31328 1.85775 1.56032 1.24906 1.68550 1.39044 1.19834 0.77964 1.01840 0.92757 1.24880 0.99462 0.87176 0.97579 1.74336 0.98545 1.21886 1.16379 1.74282 1.17662 1.11590 1.10171 1.24818 0.88592 0.94206 1.02739 1.20170 0.95266 1.00215 0.96578 1.46065 1.16169 1.16565 1.37350 1.22185 1.00507 0.81402 1.03528 0.92083 0.92685 0.92286 0.89463 0.91522 0.94577 0.93873 0.92378 0.75638 0.88932 0.84699 0.89759 0.90634 0.88800 0.89854 0.89011 0.88277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.50 10.24 37.15 0.38 -2.12 16 2 C 0.13 2.13 6.01 -4.04 -0.02 2.11 16 3 N -0.98 -18.60 2.84 -115.67 -0.33 -18.93 16 4 C 0.21 4.60 4.54 -5.19 -0.02 4.58 16 5 C -0.55 -13.53 8.50 -34.44 -0.29 -13.82 16 6 H 0.09 2.28 6.97 -52.49 -0.37 1.91 16 7 C 0.08 2.07 5.47 -17.82 -0.10 1.98 16 8 N -0.89 -24.89 13.96 55.43 0.77 -24.11 16 9 Si 0.87 19.82 27.40 -169.99 -4.66 15.16 16 10 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.26 -5.78 6.64 56.52 0.38 -5.40 16 13 S 2.79 50.38 6.10 -107.50 -0.66 49.72 16 14 O -0.99 -18.75 17.08 -57.18 -0.98 -19.72 16 15 O -0.98 -19.81 16.10 -57.18 -0.92 -20.73 16 16 N -1.13 -18.07 6.04 -11.66 -0.07 -18.14 16 17 C 0.20 3.55 6.51 -5.20 -0.03 3.52 16 18 C 0.18 3.03 7.43 -154.99 -1.15 1.88 16 19 N -0.27 -5.32 12.21 32.79 0.40 -4.92 16 20 N -0.30 -5.29 12.21 32.79 0.40 -4.89 16 21 C 0.16 2.25 8.03 -154.99 -1.24 1.00 16 22 C -0.06 -0.51 10.06 36.00 0.36 -0.15 16 23 N -0.47 -6.41 3.15 -118.00 -0.37 -6.78 16 24 C 0.07 0.61 10.71 59.85 0.64 1.25 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.84 8.09 -51.93 -0.42 0.42 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.09 1.47 8.06 -51.93 -0.42 1.05 16 29 H 0.07 1.01 7.65 -51.93 -0.40 0.61 16 30 H 0.04 0.78 7.43 -51.93 -0.39 0.39 16 31 H 0.04 0.96 6.07 -51.93 -0.32 0.65 16 32 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 33 H 0.41 5.92 8.65 -34.47 -0.30 5.62 16 34 H 0.09 1.55 6.79 -51.93 -0.35 1.19 16 35 H 0.14 2.76 5.58 -51.93 -0.29 2.47 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.42 7.87 -51.93 -0.41 0.01 16 38 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.09 0.56 7.82 -51.93 -0.41 0.15 16 41 H 0.10 0.94 7.19 -51.93 -0.37 0.57 16 LS Contribution 352.64 15.07 5.31 5.31 Total: -1.00 -33.61 352.64 -8.28 -41.89 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -5.71 Total: 5.90 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -1.48 Total: 0.23 kcal Atomic # 7 Polarization: -78.57 SS G_CDS: 0.80 Total: -77.77 kcal Atomic # 8 Polarization: -38.55 SS G_CDS: -1.90 Total: -40.45 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -4.66 Total: 15.16 kcal Atomic # 16 Polarization: 50.38 SS G_CDS: -0.66 Total: 49.72 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.61 -8.28 -41.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771689514.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.090 kcal (2) G-P(sol) polarization free energy of solvation -33.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds