Wall clock time and date at job start Fri Apr 10 2020 18:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46505 * 109.47341 * 2 1 4 4 C 1.46501 * 120.00047 * 274.00180 * 3 2 1 5 5 C 1.50697 * 109.47250 * 280.84148 * 4 3 2 6 6 H 1.08000 * 119.99849 * 3.39744 * 5 4 3 7 7 C 1.37875 * 120.00148 * 183.39823 * 5 4 3 8 8 N 1.31518 * 119.99885 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99987 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47091 * 90.00097 * 9 7 5 11 11 H 1.48494 * 109.47361 * 209.99720 * 9 7 5 12 12 H 1.48498 * 109.47010 * 330.00336 * 9 7 5 13 13 S 1.65595 * 120.00014 * 94.00209 * 3 2 1 14 14 O 1.42097 * 106.40514 * 336.31067 * 13 3 2 15 15 O 1.42101 * 106.40356 * 203.39466 * 13 3 2 16 16 N 1.65600 * 107.22184 * 89.85188 * 13 3 2 17 17 C 1.46501 * 119.99790 * 65.48174 * 16 13 3 18 18 C 1.50694 * 109.47005 * 164.40804 * 17 16 13 19 19 N 1.30520 * 126.34471 * 90.02496 * 18 17 16 20 20 N 1.28596 * 109.67292 * 179.97438 * 19 18 17 21 21 C 1.30526 * 109.67327 * 0.02562 * 20 19 18 22 22 C 1.50696 * 126.34659 * 179.97438 * 21 20 19 23 23 N 1.35487 * 107.30345 * 359.77320 * 21 20 19 24 24 C 1.46508 * 126.98010 * 180.22597 * 23 21 20 25 25 H 1.08997 * 109.47338 * 185.05005 * 1 2 3 26 26 H 1.08998 * 109.47619 * 305.05564 * 1 2 3 27 27 H 1.09006 * 109.47141 * 65.05088 * 1 2 3 28 28 H 1.09004 * 109.47112 * 239.99873 * 2 1 3 29 29 H 1.08996 * 109.47293 * 119.99758 * 2 1 3 30 30 H 1.09003 * 109.46858 * 40.83642 * 4 3 2 31 31 H 1.08994 * 109.47306 * 160.83704 * 4 3 2 32 32 H 0.97003 * 119.99737 * 180.02562 * 8 7 5 33 33 H 0.96991 * 120.00130 * 245.48719 * 16 13 3 34 34 H 1.09001 * 109.46858 * 44.40588 * 17 16 13 35 35 H 1.09001 * 109.47234 * 284.41164 * 17 16 13 36 36 H 1.08998 * 109.46931 * 89.97541 * 22 21 20 37 37 H 1.09003 * 109.47147 * 209.97654 * 22 21 20 38 38 H 1.09000 * 109.47361 * 329.97897 * 22 21 20 39 39 H 1.08998 * 109.46592 * 270.15465 * 24 23 21 40 40 H 1.09000 * 109.46578 * 30.15173 * 24 23 21 41 41 H 1.09001 * 109.47054 * 150.15454 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1791 2.1014 -1.2656 5 6 3.4606 1.6692 -1.9303 6 1 4.0646 0.8925 -1.4849 7 6 3.8621 2.2653 -3.1069 8 7 4.9803 1.8877 -3.6872 9 14 2.8170 3.6082 -3.8776 10 1 3.2436 4.9301 -3.3524 11 1 2.9877 3.5831 -5.3525 12 1 1.3891 3.3790 -3.5404 13 16 2.3887 2.1285 1.4306 14 8 1.6441 1.4580 2.4381 15 8 2.2895 3.5256 1.1910 16 7 3.9850 1.8203 1.7458 17 6 5.0231 2.3599 0.8641 18 6 6.3608 2.2751 1.5527 19 7 7.1976 1.2750 1.4969 20 7 8.2387 1.5417 2.2031 21 6 8.1132 2.7238 2.7419 22 6 9.1124 3.4068 3.6398 23 7 6.9200 3.2249 2.3408 24 6 6.3491 4.5282 2.6903 25 1 -0.3634 -1.0236 0.0905 26 1 -0.3634 0.5902 0.8412 27 1 -0.3634 0.4335 -0.9318 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.3368 1.8776 -1.9204 31 1 2.2139 3.1734 -1.0718 32 1 5.2629 2.3073 -4.5149 33 1 4.2326 1.2826 2.5141 34 1 4.7985 3.4012 0.6333 35 1 5.0524 1.7813 -0.0592 36 1 9.8033 3.9935 3.0344 37 1 8.5879 4.0646 4.3330 38 1 9.6687 2.6563 4.2015 39 1 5.7575 4.4332 3.6008 40 1 7.1537 5.2454 2.8528 41 1 5.7115 4.8753 1.8772 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771689514.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:15:55 Heat of formation + Delta-G solvation = -21.237625 kcal Electronic energy + Delta-G solvation = -25905.328953 eV Core-core repulsion = 22175.851565 eV Total energy + Delta-G solvation = -3729.477388 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 317.131 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.21914 -38.42611 -37.79280 -36.97923 -36.80613 -36.00543 -34.62205 -33.13550 -31.79512 -29.50025 -28.92058 -28.28166 -26.88466 -24.58402 -23.19660 -22.35560 -21.92485 -20.49332 -19.13157 -18.75869 -18.54779 -17.95662 -17.59194 -17.20571 -16.62157 -16.14523 -15.83721 -15.39471 -15.01533 -14.83593 -14.58093 -14.44021 -14.31349 -14.08334 -13.86075 -13.73834 -13.60008 -13.45981 -13.31275 -13.24318 -13.13934 -13.11007 -12.74776 -12.60508 -12.56944 -12.19734 -12.09736 -11.70226 -11.57777 -11.40293 -11.17154 -10.72415 -10.66002 -10.20413 -9.79277 -8.22637 -6.27740 -0.43629 0.68020 1.39754 1.43607 1.46560 1.51153 1.66371 1.98804 2.38313 2.51733 3.06498 3.11716 3.39300 3.48718 3.74516 3.81330 3.91213 4.10792 4.28315 4.37451 4.45285 4.51775 4.58035 4.69053 4.71045 4.76031 4.80612 4.94982 4.97475 4.98774 5.03271 5.06440 5.16033 5.40432 5.45324 5.50022 5.72042 5.87676 5.95009 6.35645 6.79703 7.36696 7.65150 8.91324 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.011850 B = 0.005618 C = 0.004466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.392916 B = 4982.953284 C = 6268.039094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.119 3.881 3 N -0.990 5.990 4 C 0.219 3.781 5 C -0.533 4.533 6 H 0.058 0.942 7 C 0.027 3.973 8 N -0.934 5.934 9 Si 0.918 3.082 10 H -0.268 1.268 11 H -0.287 1.287 12 H -0.244 1.244 13 S 2.804 3.196 14 O -0.995 6.995 15 O -1.001 7.001 16 N -1.113 6.113 17 C 0.215 3.785 18 C 0.163 3.837 19 N -0.317 5.317 20 N -0.344 5.344 21 C 0.181 3.819 22 C -0.062 4.062 23 N -0.465 5.465 24 C 0.054 3.946 25 H 0.087 0.913 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.044 0.956 31 H 0.043 0.957 32 H 0.265 0.735 33 H 0.420 0.580 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.109 0.891 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.130 0.870 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.249 6.453 14.457 15.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.006 4.006 3 N -0.830 5.830 4 C 0.094 3.906 5 C -0.572 4.572 6 H 0.076 0.924 7 C -0.173 4.173 8 N -0.573 5.573 9 Si 0.742 3.258 10 H -0.193 1.193 11 H -0.213 1.213 12 H -0.167 1.167 13 S 2.812 3.188 14 O -0.979 6.979 15 O -0.984 6.984 16 N -0.874 5.874 17 C 0.087 3.913 18 C -0.107 4.107 19 N -0.158 5.158 20 N -0.185 5.185 21 C -0.087 4.087 22 C -0.121 4.121 23 N -0.156 5.156 24 C -0.087 4.087 25 H 0.106 0.894 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.254 0.746 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.128 0.872 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.148 0.852 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.275 5.817 14.318 15.457 hybrid contribution -0.231 0.990 -0.646 1.204 sum 0.045 6.807 13.672 15.273 Atomic orbital electron populations 1.22184 0.95086 1.03318 1.01892 1.21264 0.95021 0.81052 1.03259 1.57491 1.79146 1.24344 1.22054 1.19394 0.96801 0.92309 0.82119 1.21590 1.06460 1.21387 1.07773 0.92413 1.25580 0.95629 0.98743 0.97300 1.70049 1.23820 1.43953 1.19495 0.86152 0.81281 0.80455 0.77886 1.19265 1.21260 1.16717 1.01150 0.72380 0.73049 0.72251 1.93564 1.69603 1.76418 1.58350 1.93530 1.86437 1.32480 1.85974 1.55767 1.24047 1.68547 1.39046 1.19473 0.78813 1.01301 0.91712 1.24602 0.99143 0.88096 0.98828 1.74210 0.99791 1.23875 1.17919 1.74177 1.17962 1.14357 1.11997 1.25839 0.88750 0.92996 1.01093 1.20496 0.94493 1.00713 0.96396 1.46272 1.15883 1.17240 1.36185 1.22629 1.02143 0.79918 1.04033 0.89404 0.93127 0.92383 0.90278 0.90201 0.93758 0.93879 0.92578 0.74623 0.88376 0.88290 0.87900 0.87206 0.88098 0.87905 0.85186 0.88942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.56 10.24 71.98 0.74 -3.83 16 2 C 0.12 3.84 6.01 86.38 0.52 4.36 16 3 N -0.99 -36.84 2.84 -519.85 -1.48 -38.32 16 4 C 0.22 9.34 4.54 85.63 0.39 9.73 16 5 C -0.53 -26.78 8.50 25.60 0.22 -26.57 16 6 H 0.06 3.20 6.97 -2.91 -0.02 3.18 16 7 C 0.03 1.44 5.47 84.65 0.46 1.91 16 8 N -0.93 -54.24 13.96 21.45 0.30 -53.94 16 9 Si 0.92 40.46 27.40 68.60 1.88 42.34 16 10 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 11 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.24 -9.90 6.64 99.48 0.66 -9.24 16 13 S 2.80 98.88 6.10 -56.49 -0.34 98.53 16 14 O -1.00 -36.14 17.08 -128.00 -2.19 -38.32 16 15 O -1.00 -39.11 16.10 -128.00 -2.06 -41.17 16 16 N -1.11 -35.68 6.04 -190.79 -1.15 -36.83 16 17 C 0.22 7.69 6.51 85.63 0.56 8.25 16 18 C 0.16 5.68 7.43 137.98 1.02 6.70 16 19 N -0.32 -12.92 12.21 -50.16 -0.61 -13.53 16 20 N -0.34 -12.47 12.21 -50.16 -0.61 -13.08 16 21 C 0.18 4.71 8.03 137.98 1.11 5.82 16 22 C -0.06 -0.79 10.06 71.23 0.72 -0.07 16 23 N -0.46 -12.06 3.15 -527.24 -1.66 -13.72 16 24 C 0.05 0.83 10.71 127.77 1.37 2.20 16 25 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.05 1.43 8.09 -2.39 -0.02 1.42 16 27 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 28 H 0.08 2.66 8.06 -2.39 -0.02 2.64 16 29 H 0.08 2.34 7.65 -2.39 -0.02 2.32 16 30 H 0.04 1.84 7.43 -2.39 -0.02 1.82 16 31 H 0.04 1.87 6.07 -2.39 -0.01 1.86 16 32 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 33 H 0.42 12.01 8.65 -96.76 -0.84 11.17 16 34 H 0.10 3.33 6.79 -2.39 -0.02 3.31 16 35 H 0.10 4.30 5.58 -2.39 -0.01 4.29 16 36 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.11 0.68 7.87 -2.39 -0.02 0.66 16 38 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.13 1.01 7.82 -2.39 -0.02 0.99 16 41 H 0.09 1.59 7.19 -2.39 -0.02 1.57 16 Total: -1.00 -74.93 352.64 -0.65 -75.59 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: 0.18 Total: 23.95 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: 7.10 Total: 8.50 kcal Atomic # 7 Polarization: -164.19 SS G_CDS: -5.22 Total: -169.41 kcal Atomic # 8 Polarization: -75.25 SS G_CDS: -4.25 Total: -79.49 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 1.88 Total: 42.34 kcal Atomic # 16 Polarization: 98.88 SS G_CDS: -0.34 Total: 98.53 kcal Total: -74.93 -0.65 -75.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771689514.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.350 kcal (2) G-P(sol) polarization free energy of solvation -74.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds