Wall clock time and date at job start Fri Apr 10 2020 18:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 120.00283 * 2 1 4 4 C 1.50699 * 109.47480 * 125.00122 * 3 2 1 5 5 C 1.37627 * 119.90770 * 265.00235 * 4 3 2 6 6 C 1.40310 * 119.96298 * 179.97438 * 5 4 3 7 7 C 1.46698 * 120.10370 * 180.29441 * 6 5 4 8 8 N 1.30735 * 120.00071 * 179.72351 * 7 6 5 9 9 N 1.40099 * 119.99525 * 180.02562 * 8 7 6 10 10 C 1.34779 * 119.99683 * 179.97438 * 9 8 7 11 11 O 1.21990 * 119.99771 * 0.02562 * 10 9 8 12 12 C 1.40587 * 120.00094 * 179.97438 * 10 9 8 13 13 H 1.07999 * 119.99878 * 0.02562 * 12 10 9 14 14 C 1.40186 * 120.00032 * 180.02562 * 12 10 9 15 15 N 1.30611 * 119.99909 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 120.00078 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47210 * 0.02562 * 16 14 12 18 18 H 1.48510 * 109.47173 * 119.99917 * 16 14 12 19 19 H 1.48499 * 109.47314 * 240.00023 * 16 14 12 20 20 C 1.40255 * 119.79589 * 0.02562 * 6 5 4 21 21 C 1.37897 * 119.82061 * 359.97438 * 20 6 5 22 22 O 1.35960 * 119.98001 * 179.97438 * 21 20 6 23 23 C 1.42902 * 117.00362 * 359.97438 * 22 21 20 24 24 C 1.53001 * 109.47105 * 179.97438 * 23 22 21 25 25 C 1.39043 * 119.91036 * 85.00055 * 4 3 2 26 26 O 1.35732 * 119.89736 * 359.97438 * 25 4 3 27 27 H 1.08001 * 119.99738 * 359.97438 * 1 2 3 28 28 H 1.07996 * 120.00212 * 180.02562 * 1 2 3 29 29 H 1.08001 * 119.99738 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.47066 * 4.99882 * 3 2 1 31 31 H 1.09001 * 109.47324 * 245.00127 * 3 2 1 32 32 H 1.07997 * 120.02199 * 359.97438 * 5 4 3 33 33 H 1.07999 * 119.99742 * 359.72703 * 7 6 5 34 34 H 0.96998 * 120.00251 * 0.02562 * 9 8 7 35 35 H 0.97004 * 119.99947 * 179.97438 * 15 14 12 36 36 H 1.08000 * 120.08883 * 179.97438 * 20 6 5 37 37 H 1.08998 * 109.47235 * 300.00097 * 23 22 21 38 38 H 1.09000 * 109.46327 * 60.00259 * 23 22 21 39 39 H 1.08995 * 109.46856 * 60.00094 * 24 23 22 40 40 H 1.08997 * 109.46925 * 180.02562 * 24 23 22 41 41 H 1.08998 * 109.47251 * 300.00207 * 24 23 22 42 42 H 0.96698 * 113.99954 * 270.02380 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0205 1.3326 1.1638 5 6 2.6450 1.9268 2.3471 6 6 3.5349 1.9527 3.4316 7 6 3.1354 2.5794 4.6963 8 7 3.9642 2.5976 5.7073 9 7 3.5824 3.1958 6.9152 10 6 4.4366 3.2141 7.9576 11 8 5.5423 2.7103 7.8491 12 6 4.0537 3.8148 9.1697 13 1 3.0750 4.2612 9.2656 14 6 4.9424 3.8343 10.2537 15 7 6.1262 3.2949 10.1375 16 14 4.4335 4.6318 11.8644 17 1 3.0533 5.1652 11.7383 18 1 4.4757 3.6215 12.9521 19 1 5.3665 5.7421 12.1836 20 6 4.8054 1.3724 3.3045 21 6 5.1727 0.7794 2.1150 22 8 6.4037 0.2164 1.9881 23 6 7.2650 0.2762 3.1268 24 6 8.5950 -0.4042 2.7966 25 6 4.2804 0.7577 1.0393 26 8 4.6445 0.1728 -0.1302 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8499 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6213 1.4026 -0.9314 32 1 1.6659 2.3729 2.4408 33 1 2.1567 3.0258 4.7923 34 1 2.7031 3.5961 7.0017 35 1 6.7413 3.3087 10.8875 36 1 5.4943 1.3900 4.1361 37 1 7.4453 1.3180 3.3917 38 1 6.7938 -0.2358 3.9659 39 1 9.0662 0.1073 1.9574 40 1 9.2518 -0.3590 3.6653 41 1 8.4143 -1.4460 2.5320 42 1 4.4260 -0.7676 -0.1843 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000566237.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:43 Heat of formation + Delta-G solvation = -40.959047 kcal Electronic energy + Delta-G solvation = -25392.638152 eV Core-core repulsion = 21532.683308 eV Total energy + Delta-G solvation = -3859.954843 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -40.39977 -38.20243 -37.75831 -36.74543 -35.45467 -34.61311 -32.70928 -31.85623 -31.47721 -30.08663 -28.75992 -26.74125 -26.36271 -23.86844 -23.12325 -21.43053 -20.72978 -20.06063 -19.52379 -18.27200 -17.82319 -17.13015 -16.71970 -16.09432 -15.63800 -15.46272 -15.25445 -15.24338 -14.44018 -14.15526 -13.84959 -13.70087 -13.37929 -13.30481 -13.01557 -12.75997 -12.60723 -12.17716 -12.07757 -12.01570 -11.90923 -11.49870 -11.44489 -11.25058 -11.14732 -10.93815 -10.72256 -10.46362 -10.42282 -10.39261 -9.62071 -9.53157 -9.10281 -8.67769 -8.16090 -7.84298 -7.28798 -6.46682 -5.02169 0.93854 1.45090 2.10868 2.71998 3.00223 3.07062 3.12187 3.22438 3.62824 3.85857 4.02918 4.26726 4.38229 4.68466 4.84261 4.90897 5.00377 5.01582 5.10506 5.17814 5.29279 5.35145 5.46551 5.58784 5.62315 5.69004 5.74589 5.76281 5.81083 5.83165 5.90340 6.03407 6.30024 6.35120 6.43369 6.46224 6.55739 6.75525 6.79845 7.14714 7.31085 7.76027 7.78839 7.91975 8.57095 8.69957 9.21017 10.32117 10.56307 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014229 B = 0.002858 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.399396 B = 9793.746560 C =11574.305403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.142 4.142 3 C -0.049 4.049 4 C -0.068 4.068 5 C -0.127 4.127 6 C 0.019 3.981 7 C 0.010 3.990 8 N -0.181 5.181 9 N -0.585 5.585 10 C 0.556 3.444 11 O -0.554 6.554 12 C -0.534 4.534 13 H 0.072 0.928 14 C 0.087 3.913 15 N -0.743 5.743 16 Si 0.918 3.082 17 H -0.261 1.261 18 H -0.273 1.273 19 H -0.273 1.273 20 C -0.174 4.174 21 C 0.110 3.890 22 O -0.310 6.310 23 C 0.049 3.951 24 C -0.148 4.148 25 C 0.066 3.934 26 O -0.483 6.483 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.106 0.894 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.129 0.871 33 H 0.110 0.890 34 H 0.370 0.630 35 H 0.274 0.726 36 H 0.146 0.854 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.063 0.937 42 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.846 -5.742 -17.089 19.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.160 4.160 3 C -0.086 4.086 4 C -0.069 4.069 5 C -0.148 4.148 6 C 0.017 3.983 7 C -0.198 4.198 8 N 0.008 4.992 9 N -0.331 5.331 10 C 0.365 3.635 11 O -0.433 6.433 12 C -0.571 4.571 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.370 5.370 16 Si 0.741 3.259 17 H -0.185 1.185 18 H -0.198 1.198 19 H -0.198 1.198 20 C -0.196 4.196 21 C 0.064 3.936 22 O -0.224 6.224 23 C -0.026 4.026 24 C -0.205 4.205 25 C 0.020 3.980 26 O -0.291 6.291 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.124 0.876 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.147 0.853 33 H 0.127 0.873 34 H 0.206 0.794 35 H 0.085 0.915 36 H 0.164 0.836 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.098 0.902 41 H 0.082 0.918 42 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -4.647 -5.861 -16.821 18.409 hybrid contribution -1.729 0.494 1.173 2.147 sum -6.377 -5.367 -15.647 17.729 Atomic orbital electron populations 1.23829 0.95812 1.01879 1.01720 1.22798 0.95814 0.98031 0.99362 1.19644 0.96453 0.95918 0.96598 1.19584 0.92609 0.99260 0.95455 1.20873 0.99671 1.02782 0.91503 1.18310 0.92755 0.95657 0.91585 1.23899 0.97711 1.05606 0.92592 1.74807 1.25922 1.05332 0.93117 1.48148 1.18618 1.58085 1.08280 1.16806 0.83910 0.81518 0.81252 1.90724 1.21037 1.49598 1.81965 1.19761 1.02637 1.38858 0.95862 0.90986 1.25776 0.93994 0.93699 1.00163 1.70023 1.05288 1.30712 1.31006 0.86149 0.79742 0.79275 0.80705 1.18476 1.19793 1.19783 1.21553 0.98423 1.02185 0.97390 1.19275 0.85808 0.95301 0.93215 1.86069 1.22659 1.74301 1.39377 1.22869 0.90452 1.01725 0.87561 1.21745 0.94806 1.01094 1.02854 1.17644 0.91624 1.03767 0.85011 1.84796 1.83531 1.27357 1.33402 0.88497 0.88537 0.87585 0.90299 0.89233 0.85281 0.87257 0.79418 0.91466 0.83601 0.91506 0.91561 0.91718 0.90210 0.91813 0.76705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.49 14.32 29.02 0.42 -1.08 16 2 C -0.14 -1.20 9.50 -36.03 -0.34 -1.54 16 3 C -0.05 -0.46 5.50 -29.04 -0.16 -0.62 16 4 C -0.07 -0.82 5.12 -104.55 -0.54 -1.36 16 5 C -0.13 -1.62 9.42 -39.03 -0.37 -1.99 16 6 C 0.02 0.30 5.88 -104.94 -0.62 -0.31 16 7 C 0.01 0.18 10.75 -14.60 -0.16 0.02 16 8 N -0.18 -4.01 10.19 32.13 0.33 -3.69 16 9 N -0.59 -13.78 6.26 28.90 0.18 -13.60 16 10 C 0.56 15.92 7.65 -15.37 -0.12 15.80 16 11 O -0.55 -18.15 15.19 4.93 0.07 -18.08 16 12 C -0.53 -14.55 9.25 -37.96 -0.35 -14.90 16 13 H 0.07 1.76 7.85 -52.49 -0.41 1.34 16 14 C 0.09 2.33 5.50 -17.34 -0.10 2.24 16 15 N -0.74 -21.41 11.70 55.56 0.65 -20.76 16 16 Si 0.92 19.04 29.56 -169.99 -5.02 14.01 16 17 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 18 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 19 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 20 C -0.17 -2.91 8.56 -38.95 -0.33 -3.24 16 21 C 0.11 1.69 6.70 -39.13 -0.26 1.43 16 22 O -0.31 -4.67 9.92 -34.15 -0.34 -5.01 16 23 C 0.05 0.67 5.46 37.16 0.20 0.87 16 24 C -0.15 -1.59 10.28 37.16 0.38 -1.21 16 25 C 0.07 0.89 6.71 -38.71 -0.26 0.63 16 26 O -0.48 -5.74 12.39 -33.44 -0.41 -6.16 16 27 H 0.10 0.67 7.84 -52.49 -0.41 0.26 16 28 H 0.10 0.65 8.06 -52.49 -0.42 0.23 16 29 H 0.11 0.82 8.06 -52.49 -0.42 0.40 16 30 H 0.08 0.64 7.70 -51.93 -0.40 0.24 16 31 H 0.09 0.83 7.68 -51.93 -0.40 0.43 16 32 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 33 H 0.11 1.55 8.03 -52.49 -0.42 1.12 16 34 H 0.37 7.29 8.61 -182.60 -1.57 5.72 16 35 H 0.27 7.04 8.29 -40.82 -0.34 6.71 16 36 H 0.15 2.71 5.76 -52.49 -0.30 2.41 16 37 H 0.07 0.96 7.66 -51.93 -0.40 0.56 16 38 H 0.07 0.93 7.66 -51.93 -0.40 0.53 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.38 2.92 9.06 45.56 0.41 3.34 16 LS Contribution 371.88 15.07 5.60 5.60 Total: -1.00 -35.50 371.88 -7.51 -43.01 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -5.97 Total: 9.91 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -2.60 Total: -5.26 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 1.16 Total: -38.04 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -0.68 Total: -29.25 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.02 Total: 14.01 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.50 -7.51 -43.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000566237.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.054 kcal (2) G-P(sol) polarization free energy of solvation -35.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds