Wall clock time and date at job start Fri Apr 10 2020 18:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36053 * 117.00017 * 2 1 4 4 C 1.37644 * 119.83831 * 0.02562 * 3 2 1 5 5 C 1.40266 * 119.74682 * 180.02562 * 4 3 2 6 6 C 1.41486 * 133.18739 * 180.02562 * 5 4 3 7 7 C 1.35957 * 107.78293 * 179.97438 * 6 5 4 8 8 C 1.46896 * 125.44923 * 179.97438 * 7 6 5 9 9 O 1.21677 * 119.99696 * 347.78024 * 8 7 6 10 10 N 1.34777 * 120.00083 * 167.78920 * 8 7 6 11 11 C 1.46498 * 120.00073 * 0.94925 * 10 8 7 12 12 C 1.46505 * 119.99694 * 180.95453 * 10 8 7 13 13 C 1.50700 * 109.47006 * 89.99900 * 12 10 8 14 14 H 1.07997 * 120.00047 * 359.97438 * 13 12 10 15 15 C 1.37875 * 119.99784 * 180.02562 * 13 12 10 16 16 N 1.31514 * 120.00069 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00151 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.46904 * 90.00339 * 17 15 13 19 19 H 1.48498 * 109.47579 * 210.00370 * 17 15 13 20 20 H 1.48501 * 109.47185 * 330.00594 * 17 15 13 21 21 N 1.38281 * 109.10436 * 0.02562 * 7 6 5 22 22 H 0.97000 * 125.63421 * 179.97438 * 21 7 6 23 23 C 1.37698 * 108.72924 * 0.02562 * 21 7 6 24 24 C 1.39088 * 132.96738 * 180.02562 * 23 21 7 25 25 C 1.38100 * 119.98170 * 179.97438 * 24 23 21 26 26 O 1.35902 * 119.75726 * 179.97438 * 25 24 23 27 27 C 1.42898 * 117.00277 * 0.02562 * 26 25 24 28 28 H 1.08999 * 109.46473 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47013 * 299.99850 * 1 2 3 30 30 H 1.08995 * 109.46831 * 60.00554 * 1 2 3 31 31 H 1.08003 * 120.12926 * 0.02562 * 4 3 2 32 32 H 1.08004 * 126.10836 * 0.19339 * 6 5 4 33 33 H 1.08998 * 109.46923 * 83.61293 * 11 10 8 34 34 H 1.09001 * 109.47319 * 203.61606 * 11 10 8 35 35 H 1.09003 * 109.47004 * 323.61792 * 11 10 8 36 36 H 1.09003 * 109.46715 * 209.99493 * 12 10 8 37 37 H 1.08999 * 109.47198 * 329.99724 * 12 10 8 38 38 H 0.96992 * 120.00200 * 179.97438 * 16 15 13 39 39 H 1.08002 * 120.01083 * 359.97438 * 24 23 21 40 40 H 1.08998 * 109.47034 * 59.99315 * 27 26 25 41 41 H 1.08992 * 109.47778 * 179.97438 * 27 26 25 42 42 H 1.09001 * 109.47014 * 300.00217 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2122 0.0000 4 6 1.2938 2.3645 0.0005 5 6 1.9326 3.6133 0.0000 6 6 1.4551 4.9451 0.0008 7 6 2.5337 5.7729 0.0002 8 6 2.4810 7.2409 0.0002 9 8 1.4299 7.8119 -0.2224 10 7 3.5971 7.9552 0.2465 11 6 4.8670 7.2680 0.4937 12 6 3.5401 9.4190 0.2671 13 6 3.2332 9.8901 1.6653 14 1 3.0941 9.1711 2.4590 15 6 3.1290 11.2390 1.9309 16 7 2.8607 11.6502 3.1510 17 14 3.3689 12.4827 0.5579 18 1 2.0625 12.7624 -0.0904 19 1 3.9218 13.7408 1.1205 20 1 4.3131 11.9333 -0.4481 21 7 3.6882 5.0118 -0.0015 22 1 4.5940 5.3590 -0.0025 23 6 3.3397 3.6797 -0.0026 24 6 4.0844 2.5049 -0.0039 25 6 3.4435 1.2816 -0.0043 26 8 4.1756 0.1366 -0.0062 27 6 5.5978 0.2759 -0.0071 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 0.2153 2.3074 0.0014 32 1 0.4190 5.2498 0.0050 33 1 5.3364 7.0187 -0.4579 34 1 5.5278 7.9200 1.0651 35 1 4.6817 6.3540 1.0579 36 1 4.5008 9.8245 -0.0502 37 1 2.7590 9.7619 -0.4115 38 1 2.7877 12.5991 3.3379 39 1 5.1635 2.5494 -0.0047 40 1 5.9099 0.8218 0.8832 41 1 6.0596 -0.7114 -0.0081 42 1 5.9086 0.8237 -0.8966 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005348971.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:48 Heat of formation + Delta-G solvation = -41.331680 kcal Electronic energy + Delta-G solvation = -26148.412027 eV Core-core repulsion = 22288.441025 eV Total energy + Delta-G solvation = -3859.971002 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.81240 -41.07653 -39.98684 -39.40542 -36.98153 -36.05072 -34.71121 -32.99323 -31.23822 -30.10791 -29.82874 -28.12250 -28.00295 -27.59445 -25.20257 -23.34962 -22.98642 -22.00739 -20.90199 -19.40632 -19.18172 -18.85219 -18.45832 -17.33939 -17.05175 -17.02206 -16.69701 -16.60128 -16.10234 -16.03918 -15.66214 -15.41418 -15.04453 -14.82569 -14.60410 -14.39585 -14.13980 -13.90126 -13.79716 -13.70827 -13.22893 -13.12236 -12.91546 -12.76932 -12.46106 -12.26470 -12.08627 -12.05964 -12.05188 -11.77413 -11.25120 -11.13206 -10.84869 -10.75321 -9.63461 -8.73648 -8.60675 -8.35658 -6.42410 -0.34449 0.53806 1.02181 1.33281 1.38254 1.45867 1.78346 2.05764 2.30165 2.31993 2.38068 2.42412 2.72345 2.98584 3.45281 3.60878 3.97753 4.05496 4.07299 4.14608 4.27044 4.35697 4.38149 4.46575 4.47117 4.47951 4.60418 4.64690 4.72501 4.74657 4.80751 4.82750 4.86062 4.93650 5.14165 5.33415 5.39722 5.45305 5.55451 5.73738 6.10008 6.18643 6.37844 6.45414 6.59495 6.62126 7.07275 7.23916 8.81325 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024567 B = 0.002798 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.456190 B =10003.077779 C =10690.275960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.325 6.325 3 C 0.070 3.930 4 C -0.126 4.126 5 C -0.129 4.129 6 C -0.119 4.119 7 C 0.014 3.986 8 C 0.567 3.433 9 O -0.573 6.573 10 N -0.598 5.598 11 C 0.053 3.947 12 C 0.223 3.777 13 C -0.542 4.542 14 H 0.027 0.973 15 C 0.012 3.988 16 N -0.945 5.945 17 Si 0.950 3.050 18 H -0.276 1.276 19 H -0.275 1.275 20 H -0.234 1.234 21 N -0.566 5.566 22 H 0.434 0.566 23 C 0.112 3.888 24 C -0.191 4.191 25 C 0.135 3.865 26 O -0.319 6.319 27 C 0.013 3.987 28 H 0.119 0.881 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.156 0.844 32 H 0.150 0.850 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.025 0.975 38 H 0.269 0.731 39 H 0.166 0.834 40 H 0.067 0.933 41 H 0.120 0.880 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.360 -24.982 -9.490 27.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.240 6.240 3 C 0.024 3.976 4 C -0.146 4.146 5 C -0.134 4.134 6 C -0.146 4.146 7 C -0.096 4.096 8 C 0.356 3.644 9 O -0.453 6.453 10 N -0.329 5.329 11 C -0.089 4.089 12 C 0.101 3.899 13 C -0.580 4.580 14 H 0.045 0.955 15 C -0.186 4.186 16 N -0.584 5.584 17 Si 0.772 3.228 18 H -0.202 1.202 19 H -0.201 1.201 20 H -0.157 1.157 21 N -0.181 5.181 22 H 0.284 0.716 23 C 0.001 3.999 24 C -0.213 4.213 25 C 0.087 3.913 26 O -0.232 6.232 27 C -0.081 4.081 28 H 0.138 0.862 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.173 0.827 32 H 0.167 0.833 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.043 0.957 38 H 0.078 0.922 39 H 0.184 0.816 40 H 0.085 0.915 41 H 0.138 0.862 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.028 -24.785 -9.496 27.217 hybrid contribution -0.012 1.511 0.193 1.523 sum 6.016 -23.274 -9.303 25.776 Atomic orbital electron populations 1.23333 0.76808 1.05492 1.02122 1.86134 1.22933 1.25406 1.89484 1.18049 0.89357 0.85331 1.04831 1.20574 1.00620 0.88773 1.04619 1.17943 0.92695 0.92927 1.09805 1.20902 0.98393 0.90648 1.04667 1.19865 0.87506 0.89825 1.12414 1.17647 0.83820 0.85552 0.77426 1.90780 1.30923 1.71553 1.52018 1.47830 1.09090 1.07885 1.68045 1.22432 0.85182 0.98541 1.02757 1.19485 0.98158 0.76684 0.95529 1.21526 1.49313 0.92626 0.94548 0.95463 1.25874 0.93792 1.00617 0.98349 1.70048 1.49930 1.16292 1.22169 0.85688 0.79612 0.78158 0.79329 1.20164 1.20056 1.15651 1.43060 1.08280 1.03487 1.63310 0.71610 1.18145 0.93736 0.84773 1.03248 1.19901 1.00822 0.87380 1.13164 1.18012 0.88298 0.85735 0.99213 1.86160 1.21088 1.27635 1.88356 1.23427 0.76392 1.05711 1.02552 0.86246 0.92016 0.91838 0.82688 0.83266 0.88796 0.89022 0.90112 0.92076 0.95678 0.92157 0.81628 0.91470 0.86227 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.33 -7.21 10.27 -80.05 -0.82 -8.03 16 3 C 0.07 1.67 6.69 22.52 0.15 1.82 16 4 C -0.13 -2.99 9.09 22.62 0.21 -2.79 16 5 C -0.13 -3.61 6.15 -21.34 -0.13 -3.74 16 6 C -0.12 -3.86 10.55 22.54 0.24 -3.62 16 7 C 0.01 0.46 6.56 39.86 0.26 0.73 16 8 C 0.57 24.27 7.64 86.51 0.66 24.93 16 9 O -0.57 -29.65 16.44 -4.28 -0.07 -29.72 16 10 N -0.60 -24.12 2.86 -855.62 -2.44 -26.56 16 11 C 0.05 1.42 8.86 127.77 1.13 2.55 16 12 C 0.22 10.61 4.21 85.63 0.36 10.97 16 13 C -0.54 -31.58 9.94 25.60 0.25 -31.32 16 14 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 15 C 0.01 0.70 5.47 84.65 0.46 1.16 16 16 N -0.94 -59.43 13.96 21.45 0.30 -59.13 16 17 Si 0.95 43.48 27.47 68.60 1.88 45.36 16 18 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 19 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 20 H -0.23 -9.39 6.54 99.48 0.65 -8.74 16 21 N -0.57 -14.43 5.09 -177.11 -0.90 -15.34 16 22 H 0.43 8.40 4.91 -92.71 -0.46 7.94 16 23 C 0.11 2.80 7.24 39.07 0.28 3.09 16 24 C -0.19 -3.83 9.04 22.44 0.20 -3.62 16 25 C 0.14 3.02 6.70 22.63 0.15 3.17 16 26 O -0.32 -6.45 10.26 -78.34 -0.80 -7.25 16 27 C 0.01 0.14 9.80 113.37 1.11 1.25 16 28 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.06 0.76 7.65 -2.39 -0.02 0.74 16 30 H 0.06 0.75 7.65 -2.39 -0.02 0.73 16 31 H 0.16 2.95 6.25 -2.91 -0.02 2.93 16 32 H 0.15 4.80 8.06 -2.91 -0.02 4.78 16 33 H 0.09 1.73 7.66 -2.39 -0.02 1.71 16 34 H 0.09 2.48 8.02 -2.39 -0.02 2.46 16 35 H 0.08 1.93 5.23 -2.39 -0.01 1.92 16 36 H 0.06 2.57 7.13 -2.39 -0.02 2.55 16 37 H 0.03 1.28 6.83 -2.39 -0.02 1.26 16 38 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 39 H 0.17 2.15 6.24 -2.91 -0.02 2.13 16 40 H 0.07 0.57 7.64 -2.39 -0.02 0.55 16 41 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.07 0.55 7.64 -2.39 -0.02 0.53 16 Total: -1.00 -82.42 348.42 4.16 -78.26 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.56 Total: 16.49 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 6.46 Total: 5.91 kcal Atomic # 7 Polarization: -97.98 SS G_CDS: -3.05 Total: -101.02 kcal Atomic # 8 Polarization: -43.31 SS G_CDS: -1.70 Total: -45.00 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.88 Total: 45.36 kcal Total: -82.42 4.16 -78.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005348971.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.928 kcal (2) G-P(sol) polarization free energy of solvation -82.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds