Wall clock time and date at job start Fri Apr 10 2020 18:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.50691 * 109.47318 * 90.00113 * 3 2 1 5 5 H 1.08001 * 119.99896 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00413 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99924 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00255 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47163 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47207 * 120.00516 * 8 6 4 11 11 H 1.48500 * 109.47187 * 240.00340 * 8 6 4 12 12 C 1.34779 * 120.00212 * 180.02562 * 2 1 3 13 13 O 1.21279 * 120.00410 * 179.97438 * 12 2 1 14 14 C 1.50703 * 119.99541 * 359.97438 * 12 2 1 15 15 C 1.53000 * 109.46653 * 179.97438 * 14 12 2 16 16 N 1.46906 * 109.46893 * 179.97438 * 15 14 12 17 17 C 1.46897 * 111.00173 * 293.95601 * 16 15 14 18 18 C 1.46903 * 110.99806 * 170.00198 * 16 15 14 19 19 H 1.09002 * 109.64435 * 310.70362 * 18 16 15 20 20 C 1.53880 * 109.64484 * 71.13212 * 18 16 15 21 21 C 1.54977 * 106.65460 * 167.15063 * 20 18 16 22 22 S 1.83290 * 102.48154 * 317.38107 * 21 20 18 23 23 O 1.42094 * 109.35672 * 269.90649 * 22 21 20 24 24 O 1.42102 * 109.47443 * 136.73374 * 22 21 20 25 25 C 1.54167 * 109.64540 * 190.27592 * 18 16 15 26 26 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 27 27 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 28 28 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 29 29 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 30 30 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 31 31 H 0.96995 * 120.00442 * 179.97438 * 7 6 4 32 32 H 1.08996 * 109.47057 * 299.99739 * 14 12 2 33 33 H 1.08996 * 109.47084 * 60.00703 * 14 12 2 34 34 H 1.08994 * 109.48028 * 300.00003 * 15 14 12 35 35 H 1.09007 * 109.47101 * 60.00827 * 15 14 12 36 36 H 1.09001 * 109.46772 * 60.00278 * 17 16 15 37 37 H 1.08998 * 109.47141 * 179.97438 * 17 16 15 38 38 H 1.09001 * 109.47241 * 300.00201 * 17 16 15 39 39 H 1.08996 * 110.02603 * 286.32042 * 20 18 16 40 40 H 1.09006 * 110.02549 * 47.74562 * 20 18 16 41 41 H 1.09008 * 110.75464 * 199.18228 * 21 20 18 42 42 H 1.08992 * 111.07422 * 75.73394 * 21 20 18 43 43 H 1.08999 * 110.31658 * 331.14208 * 25 18 16 44 44 H 1.09001 * 110.32209 * 93.23520 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 1.4207 5 1 2.0982 1.0958 2.2416 6 6 3.1270 2.8774 1.6727 7 7 3.5543 3.6176 0.6731 8 14 3.4390 3.4163 3.4339 9 1 2.8608 2.4164 4.3672 10 1 4.9016 3.5241 3.6668 11 1 2.8019 4.7371 3.6676 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 6 2.3796 -3.6352 -0.0018 16 7 1.6451 -4.9074 -0.0012 17 6 0.9010 -5.0851 1.2529 18 6 2.5513 -6.0386 -0.2405 19 1 3.1766 -5.8299 -1.1086 20 6 3.4401 -6.2600 0.9960 21 6 4.1213 -7.6398 0.8121 22 16 2.7480 -8.6789 0.1844 23 8 2.0702 -9.2764 1.2810 24 8 3.2176 -9.4895 -0.8842 25 6 1.7284 -7.3182 -0.4900 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 0.8900 0.5139 28 1 -0.3633 -0.8900 0.5139 29 1 3.1499 1.1384 -0.5139 30 1 1.6084 2.0284 -0.5139 31 1 4.0311 4.4434 0.8503 32 1 0.7591 -2.5302 0.8897 33 1 0.7585 -2.5298 -0.8903 34 1 3.0057 -3.5772 -0.8922 35 1 3.0069 -3.5779 0.8878 36 1 0.1875 -4.2696 1.3706 37 1 0.3661 -6.0344 1.2265 38 1 1.5970 -5.0830 2.0917 39 1 4.1967 -5.4777 1.0568 40 1 2.8298 -6.2607 1.8992 41 1 4.4888 -8.0193 1.7657 42 1 4.9290 -7.5841 0.0825 43 1 0.7750 -7.2634 0.0354 44 1 1.5637 -7.4601 -1.5581 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036869970.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:14 Heat of formation + Delta-G solvation = -90.395466 kcal Electronic energy + Delta-G solvation = -25048.243551 eV Core-core repulsion = 21321.588935 eV Total energy + Delta-G solvation = -3726.654616 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.65574 -38.68766 -37.38543 -36.37663 -34.94749 -34.40825 -32.67093 -31.13014 -29.64928 -27.90434 -27.05454 -25.80540 -24.77947 -23.46483 -21.90373 -20.21458 -19.21477 -18.44479 -17.45962 -17.19066 -16.59645 -16.36037 -16.05545 -15.65651 -15.49415 -15.13195 -14.99669 -14.60568 -14.43395 -14.15251 -13.77602 -13.30926 -12.96756 -12.77000 -12.53268 -12.41450 -12.38887 -12.31030 -12.19993 -12.15212 -11.95956 -11.78422 -11.68690 -11.39022 -11.19993 -11.14056 -10.97479 -10.84886 -10.64009 -10.57416 -10.20366 -9.65447 -8.96299 -8.64445 -8.48193 -7.68804 -6.08686 -4.13629 -0.34703 2.10894 3.19505 3.25877 3.32419 3.35103 3.40020 3.40646 3.65516 3.91282 4.05728 4.11113 4.27673 4.39240 4.41296 4.50841 4.85678 4.96325 5.05092 5.11412 5.17845 5.20484 5.24372 5.26083 5.28906 5.39562 5.52995 5.56233 5.69194 5.80823 5.86231 5.96465 5.99118 6.17821 6.66448 6.71465 7.01500 7.40000 7.49448 7.87636 8.18990 8.37334 8.85581 9.04231 9.51674 10.99458 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025814 B = 0.002450 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.441689 B =11427.249422 C =11796.292556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.603 5.603 3 C 0.244 3.756 4 C -0.526 4.526 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.504 3.496 13 O -0.546 6.546 14 C -0.136 4.136 15 C 0.067 3.933 16 N -0.526 5.526 17 C 0.001 3.999 18 C 0.093 3.907 19 H 0.108 0.892 20 C -0.164 4.164 21 C -0.581 4.581 22 S 2.385 3.615 23 O -0.938 6.938 24 O -0.940 6.940 25 C -0.586 4.586 26 H 0.045 0.955 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.044 0.956 30 H 0.032 0.968 31 H 0.263 0.737 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.050 0.950 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.038 0.962 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.144 0.856 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.739 -21.265 -1.551 22.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.335 5.335 3 C 0.125 3.875 4 C -0.564 4.564 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.290 3.710 13 O -0.425 6.425 14 C -0.177 4.177 15 C -0.061 4.061 16 N -0.249 5.249 17 C -0.146 4.146 18 C -0.017 4.017 19 H 0.126 0.874 20 C -0.204 4.204 21 C -0.712 4.712 22 S 2.568 3.432 23 O -0.935 6.935 24 O -0.937 6.937 25 C -0.716 4.716 26 H 0.063 0.937 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.056 0.944 39 H 0.122 0.878 40 H 0.112 0.888 41 H 0.155 0.845 42 H 0.157 0.843 43 H 0.162 0.838 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.513 -22.034 -1.974 22.799 hybrid contribution 0.746 1.358 1.656 2.268 sum -4.767 -20.677 -0.318 21.221 Atomic orbital electron populations 1.21639 0.81397 1.02537 1.00465 1.48163 1.06219 1.07898 1.71173 1.19296 0.92574 0.78151 0.97507 1.21453 1.36445 1.06262 0.92287 0.92496 1.24946 0.95372 0.96408 0.97452 1.69939 1.38397 1.14341 1.30680 0.86441 0.78089 0.78332 0.84535 1.19846 1.20862 1.20929 1.20273 0.88055 0.85162 0.77489 1.90663 1.13975 1.87378 1.50476 1.21650 0.99244 0.92613 1.04147 1.21923 0.94831 0.86400 1.02901 1.62220 1.26322 1.01371 1.34981 1.22685 0.98668 1.03102 0.90171 1.22096 0.91626 0.89850 0.98161 0.87432 1.23055 1.00373 0.96261 1.00752 1.30521 1.16747 1.10642 1.13269 1.09171 0.79362 0.78246 0.76386 1.93625 1.72617 1.74371 1.52924 1.93620 1.80010 1.65124 1.54947 1.30692 1.13525 1.13408 1.13978 0.93681 0.90830 0.92444 0.93840 0.95011 0.92734 0.89487 0.88755 0.89587 0.93211 0.90243 0.91021 0.94354 0.87772 0.88754 0.84484 0.84255 0.83793 0.83722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.26 10.24 59.85 0.61 1.87 16 2 N -0.60 -12.32 2.86 -182.95 -0.52 -12.84 16 3 C 0.24 6.28 5.16 -5.20 -0.03 6.25 16 4 C -0.53 -14.69 9.39 -34.45 -0.32 -15.01 16 5 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 6 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 7 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 8 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 9 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 C 0.50 9.82 7.67 -10.98 -0.08 9.74 16 13 O -0.55 -13.00 15.56 5.56 0.09 -12.92 16 14 C -0.14 -1.79 4.18 -27.88 -0.12 -1.90 16 15 C 0.07 0.79 3.89 -3.82 -0.01 0.78 16 16 N -0.53 -4.72 4.72 -233.59 -1.10 -5.82 16 17 C 0.00 0.01 8.46 60.06 0.51 0.52 16 18 C 0.09 0.66 2.61 -66.64 -0.17 0.49 16 19 H 0.11 0.68 7.93 -51.93 -0.41 0.27 16 20 C -0.16 -1.07 5.05 -25.23 -0.13 -1.20 16 21 C -0.58 -3.07 7.31 38.20 0.28 -2.79 16 22 S 2.39 16.97 6.10 -107.50 -0.66 16.31 16 23 O -0.94 -9.97 18.14 -57.73 -1.05 -11.02 16 24 O -0.94 -10.02 18.15 -57.73 -1.05 -11.07 16 25 C -0.59 -3.38 6.76 37.77 0.26 -3.13 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 1.15 8.07 -51.93 -0.42 0.73 16 28 H 0.06 0.69 6.44 -51.93 -0.33 0.35 16 29 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 30 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.09 1.01 5.81 -51.93 -0.30 0.71 16 33 H 0.09 1.09 8.11 -51.93 -0.42 0.67 16 34 H 0.09 1.08 7.89 -51.93 -0.41 0.67 16 35 H 0.05 0.64 7.42 -51.93 -0.39 0.26 16 36 H 0.08 0.62 6.47 -51.93 -0.34 0.29 16 37 H 0.07 0.45 6.12 -51.93 -0.32 0.14 16 38 H 0.04 0.29 6.20 -51.93 -0.32 -0.03 16 39 H 0.10 0.74 7.67 -51.93 -0.40 0.35 16 40 H 0.09 0.58 5.81 -51.93 -0.30 0.28 16 41 H 0.14 0.59 8.14 -51.92 -0.42 0.16 16 42 H 0.14 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.14 0.76 5.99 -51.93 -0.31 0.45 16 44 H 0.14 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 359.96 15.07 5.42 5.42 Total: -1.00 -38.04 359.96 -9.17 -47.20 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -6.71 Total: -3.42 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: 0.69 Total: -2.78 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: -0.89 Total: -44.27 kcal Atomic # 8 Polarization: -33.00 SS G_CDS: -2.01 Total: -35.01 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 16.97 SS G_CDS: -0.66 Total: 16.31 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -38.04 -9.17 -47.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036869970.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.193 kcal (2) G-P(sol) polarization free energy of solvation -38.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds