Wall clock time and date at job start Fri Apr 10 2020 18:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.50691 * 109.47318 * 90.00113 * 3 2 1 5 5 H 1.08001 * 119.99896 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00413 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99924 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00255 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47163 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47207 * 120.00516 * 8 6 4 11 11 H 1.48500 * 109.47187 * 240.00340 * 8 6 4 12 12 C 1.34779 * 120.00212 * 180.02562 * 2 1 3 13 13 O 1.21279 * 120.00410 * 179.97438 * 12 2 1 14 14 C 1.50703 * 119.99541 * 359.97438 * 12 2 1 15 15 C 1.53000 * 109.46653 * 179.97438 * 14 12 2 16 16 N 1.46906 * 109.46893 * 179.97438 * 15 14 12 17 17 C 1.46897 * 111.00173 * 293.95601 * 16 15 14 18 18 C 1.46903 * 110.99806 * 170.00198 * 16 15 14 19 19 H 1.09002 * 109.64435 * 310.70362 * 18 16 15 20 20 C 1.53880 * 109.64484 * 71.13212 * 18 16 15 21 21 C 1.54977 * 106.65460 * 167.15063 * 20 18 16 22 22 S 1.83290 * 102.48154 * 317.38107 * 21 20 18 23 23 O 1.42094 * 109.35672 * 269.90649 * 22 21 20 24 24 O 1.42102 * 109.47443 * 136.73374 * 22 21 20 25 25 C 1.54167 * 109.64540 * 190.27592 * 18 16 15 26 26 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 27 27 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 28 28 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 29 29 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 30 30 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 31 31 H 0.96995 * 120.00442 * 179.97438 * 7 6 4 32 32 H 1.08996 * 109.47057 * 299.99739 * 14 12 2 33 33 H 1.08996 * 109.47084 * 60.00703 * 14 12 2 34 34 H 1.08994 * 109.48028 * 300.00003 * 15 14 12 35 35 H 1.09007 * 109.47101 * 60.00827 * 15 14 12 36 36 H 1.09001 * 109.46772 * 60.00278 * 17 16 15 37 37 H 1.08998 * 109.47141 * 179.97438 * 17 16 15 38 38 H 1.09001 * 109.47241 * 300.00201 * 17 16 15 39 39 H 1.08996 * 110.02603 * 286.32042 * 20 18 16 40 40 H 1.09006 * 110.02549 * 47.74562 * 20 18 16 41 41 H 1.09008 * 110.75464 * 199.18228 * 21 20 18 42 42 H 1.08992 * 111.07422 * 75.73394 * 21 20 18 43 43 H 1.08999 * 110.31658 * 331.14208 * 25 18 16 44 44 H 1.09001 * 110.32209 * 93.23520 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 1.4207 5 1 2.0982 1.0958 2.2416 6 6 3.1270 2.8774 1.6727 7 7 3.5543 3.6176 0.6731 8 14 3.4390 3.4163 3.4339 9 1 2.8608 2.4164 4.3672 10 1 4.9016 3.5241 3.6668 11 1 2.8019 4.7371 3.6676 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 6 2.3796 -3.6352 -0.0018 16 7 1.6451 -4.9074 -0.0012 17 6 0.9010 -5.0851 1.2529 18 6 2.5513 -6.0386 -0.2405 19 1 3.1766 -5.8299 -1.1086 20 6 3.4401 -6.2600 0.9960 21 6 4.1213 -7.6398 0.8121 22 16 2.7480 -8.6789 0.1844 23 8 2.0702 -9.2764 1.2810 24 8 3.2176 -9.4895 -0.8842 25 6 1.7284 -7.3182 -0.4900 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 0.8900 0.5139 28 1 -0.3633 -0.8900 0.5139 29 1 3.1499 1.1384 -0.5139 30 1 1.6084 2.0284 -0.5139 31 1 4.0311 4.4434 0.8503 32 1 0.7591 -2.5302 0.8897 33 1 0.7585 -2.5298 -0.8903 34 1 3.0057 -3.5772 -0.8922 35 1 3.0069 -3.5779 0.8878 36 1 0.1875 -4.2696 1.3706 37 1 0.3661 -6.0344 1.2265 38 1 1.5970 -5.0830 2.0917 39 1 4.1967 -5.4777 1.0568 40 1 2.8298 -6.2607 1.8992 41 1 4.4888 -8.0193 1.7657 42 1 4.9290 -7.5841 0.0825 43 1 0.7750 -7.2634 0.0354 44 1 1.5637 -7.4601 -1.5581 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036869970.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:13 Heat of formation + Delta-G solvation = -121.211537 kcal Electronic energy + Delta-G solvation = -25049.579836 eV Core-core repulsion = 21321.588935 eV Total energy + Delta-G solvation = -3727.990901 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.81152 -39.73939 -38.08293 -37.07620 -36.59669 -35.22970 -34.68705 -32.05527 -30.45078 -29.50109 -27.85157 -27.22489 -25.66745 -24.81198 -23.14897 -20.87543 -19.92084 -19.77727 -18.70835 -18.28741 -17.77207 -17.48172 -17.08933 -16.81680 -16.60145 -16.32219 -15.90889 -15.77836 -15.36498 -15.11497 -14.64377 -14.42196 -14.16283 -13.80396 -13.62317 -13.44173 -13.38946 -13.32696 -13.20239 -13.11710 -13.05405 -12.84918 -12.78071 -12.66705 -12.52057 -12.29819 -12.20532 -11.95021 -11.88988 -11.71115 -11.65793 -11.19187 -10.65721 -10.57131 -9.40102 -9.34581 -8.22986 -6.38024 -0.90416 1.36208 1.38122 1.49933 1.57391 1.87867 2.29587 2.42589 2.64873 2.91340 3.06540 3.11231 3.39645 3.55517 3.75062 3.86777 3.96231 3.97955 4.06980 4.16605 4.42469 4.47185 4.56596 4.61201 4.65878 4.70152 4.75539 4.79471 4.86890 4.97209 4.97571 5.01251 5.06316 5.09828 5.21292 5.24344 5.56546 5.84935 5.94986 5.99491 6.05945 6.70120 6.82267 7.28376 7.51139 8.84197 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025814 B = 0.002450 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.441689 B =11427.249422 C =11796.292556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.613 5.613 3 C 0.257 3.743 4 C -0.540 4.540 5 H 0.054 0.946 6 C 0.006 3.994 7 N -0.930 5.930 8 Si 0.968 3.032 9 H -0.266 1.266 10 H -0.282 1.282 11 H -0.270 1.270 12 C 0.494 3.506 13 O -0.601 6.601 14 C -0.118 4.118 15 C 0.073 3.927 16 N -0.522 5.522 17 C -0.009 4.009 18 C 0.085 3.915 19 H 0.115 0.885 20 C -0.167 4.167 21 C -0.565 4.565 22 S 2.396 3.604 23 O -0.977 6.977 24 O -0.979 6.979 25 C -0.570 4.570 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.096 0.904 29 H -0.003 1.003 30 H 0.021 0.979 31 H 0.267 0.733 32 H 0.111 0.889 33 H 0.120 0.880 34 H 0.074 0.926 35 H 0.034 0.966 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.039 0.961 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.150 0.850 42 H 0.155 0.845 43 H 0.155 0.845 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.266 -22.217 -0.563 23.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.344 5.344 3 C 0.135 3.865 4 C -0.579 4.579 5 H 0.072 0.928 6 C -0.193 4.193 7 N -0.570 5.570 8 Si 0.793 3.207 9 H -0.190 1.190 10 H -0.208 1.208 11 H -0.195 1.195 12 C 0.283 3.717 13 O -0.483 6.483 14 C -0.158 4.158 15 C -0.055 4.055 16 N -0.245 5.245 17 C -0.156 4.156 18 C -0.025 4.025 19 H 0.133 0.867 20 C -0.207 4.207 21 C -0.697 4.697 22 S 2.583 3.417 23 O -0.974 6.974 24 O -0.976 6.976 25 C -0.701 4.701 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.115 0.885 29 H 0.015 0.985 30 H 0.039 0.961 31 H 0.076 0.924 32 H 0.129 0.871 33 H 0.138 0.862 34 H 0.093 0.907 35 H 0.052 0.948 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.057 0.943 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.168 0.832 42 H 0.173 0.827 43 H 0.173 0.827 44 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -7.101 -23.042 -0.990 24.131 hybrid contribution 1.223 1.681 1.302 2.452 sum -5.878 -21.361 0.311 22.157 Atomic orbital electron populations 1.21931 0.77837 1.03991 1.02571 1.48209 1.08457 1.06469 1.71244 1.18749 0.91109 0.80619 0.95982 1.21727 1.36614 1.06474 0.93050 0.92812 1.25880 0.94978 0.96491 1.01975 1.70058 1.39032 1.14850 1.33023 0.85357 0.77849 0.78416 0.79117 1.18975 1.20801 1.19514 1.21425 0.87824 0.86734 0.75747 1.90631 1.16689 1.88283 1.52663 1.21587 0.99011 0.88836 1.06364 1.21743 0.94443 0.87589 1.01723 1.62203 1.26100 1.00494 1.35664 1.22847 0.98774 1.04327 0.89643 1.22245 0.91865 0.89653 0.98753 0.86707 1.23072 1.00377 0.96522 1.00768 1.30426 1.16022 1.08980 1.14314 1.08670 0.79482 0.78384 0.75153 1.93571 1.73763 1.76012 1.54015 1.93567 1.80784 1.67196 1.56098 1.30553 1.13239 1.11271 1.15033 0.91198 0.91849 0.88524 0.98456 0.96052 0.92415 0.87057 0.86222 0.90739 0.94789 0.89807 0.89224 0.94276 0.88362 0.88264 0.83153 0.82710 0.82748 0.82155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.18 10.24 127.77 1.31 3.49 16 2 N -0.61 -24.93 2.86 -851.12 -2.43 -27.37 16 3 C 0.26 13.71 5.16 85.63 0.44 14.15 16 4 C -0.54 -30.73 9.39 25.60 0.24 -30.49 16 5 H 0.05 3.02 7.81 -2.91 -0.02 2.99 16 6 C 0.01 0.32 5.46 84.65 0.46 0.78 16 7 N -0.93 -55.94 13.29 21.45 0.28 -55.66 16 8 Si 0.97 44.29 29.54 68.60 2.03 46.31 16 9 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 12 C 0.49 19.10 7.67 87.66 0.67 19.78 16 13 O -0.60 -29.51 15.56 -3.02 -0.05 -29.56 16 14 C -0.12 -2.81 4.18 29.85 0.12 -2.68 16 15 C 0.07 1.62 3.89 86.30 0.34 1.96 16 16 N -0.52 -7.93 4.72 -892.95 -4.21 -12.14 16 17 C -0.01 -0.11 8.46 127.69 1.08 0.97 16 18 C 0.09 1.01 2.61 45.61 0.12 1.13 16 19 H 0.11 1.22 7.93 -2.39 -0.02 1.20 16 20 C -0.17 -1.87 5.05 31.57 0.16 -1.71 16 21 C -0.57 -4.91 7.31 72.66 0.53 -4.38 16 22 S 2.40 31.21 6.10 -56.49 -0.34 30.87 16 23 O -0.98 -19.99 18.14 -127.47 -2.31 -22.30 16 24 O -0.98 -20.33 18.15 -127.47 -2.31 -22.64 16 25 C -0.57 -5.16 6.76 72.38 0.49 -4.67 16 26 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.06 1.89 8.07 -2.39 -0.02 1.87 16 28 H 0.10 1.91 6.44 -2.38 -0.02 1.90 16 29 H 0.00 -0.17 7.42 -2.39 -0.02 -0.18 16 30 H 0.02 1.16 8.07 -2.38 -0.02 1.14 16 31 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 32 H 0.11 2.15 5.81 -2.39 -0.01 2.14 16 33 H 0.12 2.31 8.11 -2.39 -0.02 2.29 16 34 H 0.07 1.82 7.89 -2.39 -0.02 1.80 16 35 H 0.03 0.85 7.42 -2.38 -0.02 0.84 16 36 H 0.08 0.99 6.47 -2.39 -0.02 0.97 16 37 H 0.09 0.82 6.12 -2.39 -0.01 0.80 16 38 H 0.04 0.50 6.20 -2.39 -0.01 0.49 16 39 H 0.10 1.28 7.67 -2.39 -0.02 1.26 16 40 H 0.10 1.02 5.81 -2.38 -0.01 1.01 16 41 H 0.15 0.98 8.14 -2.38 -0.02 0.96 16 42 H 0.15 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.15 1.14 5.99 -2.39 -0.01 1.13 16 44 H 0.16 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -85.53 359.96 -2.39 -87.92 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: 1.00 Total: 6.24 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: 5.97 Total: -1.67 kcal Atomic # 7 Polarization: -88.81 SS G_CDS: -6.36 Total: -95.17 kcal Atomic # 8 Polarization: -69.83 SS G_CDS: -4.67 Total: -74.51 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: 31.21 SS G_CDS: -0.34 Total: 30.87 kcal Total: -85.53 -2.39 -87.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036869970.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.293 kcal (2) G-P(sol) polarization free energy of solvation -85.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds