Wall clock time and date at job start Fri Apr 10 2020 18:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.46922 * 2 1 4 4 C 1.36833 * 119.99879 * 95.29919 * 3 2 1 5 5 H 1.08000 * 120.00008 * 213.36885 * 4 3 2 6 6 C 1.38755 * 119.99986 * 33.36402 * 4 3 2 7 7 N 1.31622 * 119.99948 * 30.01314 * 6 4 3 8 8 Si 1.86804 * 120.00222 * 210.01043 * 6 4 3 9 9 H 1.48500 * 109.47132 * 270.00080 * 8 6 4 10 10 H 1.48504 * 109.47086 * 150.00022 * 8 6 4 11 11 H 1.48498 * 109.46887 * 30.00406 * 8 6 4 12 12 C 1.39348 * 120.00205 * 275.29927 * 3 2 1 13 13 C 1.39108 * 120.02128 * 359.72914 * 12 3 2 14 14 C 1.37953 * 119.98313 * 179.71907 * 13 12 3 15 15 C 1.38949 * 120.01703 * 0.55130 * 14 13 12 16 16 N 1.39984 * 119.98033 * 179.69977 * 15 14 13 17 17 C 1.46762 * 124.35015 * 353.89138 * 16 15 14 18 18 C 1.54657 * 105.38476 * 162.85602 * 17 16 15 19 19 H 1.08999 * 111.19146 * 267.59771 * 18 17 16 20 20 C 1.50692 * 110.82439 * 143.77629 * 18 17 16 21 21 O 1.20827 * 120.00218 * 6.35144 * 20 18 17 22 22 O 1.34228 * 119.99977 * 186.34938 * 20 18 17 23 23 C 1.54632 * 101.68426 * 25.76447 * 18 17 16 24 24 C 1.34415 * 124.34958 * 174.19336 * 16 15 14 25 25 O 1.21296 * 124.94627 * 0.42139 * 24 16 15 26 26 C 1.38956 * 120.03750 * 359.72099 * 15 14 13 27 27 C 1.37942 * 120.01892 * 0.02562 * 26 15 14 28 28 H 1.09002 * 109.47393 * 299.99446 * 1 2 3 29 29 H 1.09003 * 109.47332 * 59.99822 * 1 2 3 30 30 H 1.09001 * 109.46901 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47393 * 240.00554 * 2 1 3 32 32 H 1.08996 * 109.47684 * 120.00105 * 2 1 3 33 33 H 0.96996 * 120.00016 * 3.77270 * 7 6 4 34 34 H 1.08005 * 120.00719 * 359.97438 * 13 12 3 35 35 H 1.08005 * 119.99005 * 180.29238 * 14 13 12 36 36 H 1.09008 * 110.24556 * 281.98710 * 17 16 15 37 37 H 1.08998 * 110.24273 * 43.98065 * 17 16 15 38 38 H 0.96708 * 116.99871 * 180.02562 * 22 20 18 39 39 H 1.08997 * 110.48620 * 216.31060 * 23 18 17 40 40 H 1.08996 * 110.59791 * 93.72350 * 23 18 17 41 41 H 1.08005 * 119.98630 * 179.97438 * 26 15 14 42 42 H 1.08004 * 120.00688 * 179.97438 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3495 1.9898 1.1800 5 1 2.1887 3.0505 1.3043 6 6 2.8918 1.2441 2.2168 7 7 3.6198 0.1801 1.9515 8 14 2.5889 1.7502 3.9893 9 1 3.6603 2.6799 4.4287 10 1 2.5935 0.5444 4.8561 11 1 1.2719 2.4286 4.0921 12 6 2.1454 2.0753 -1.2016 13 6 1.8142 1.4553 -2.4020 14 6 1.9349 2.1450 -3.5906 15 6 2.3980 3.4551 -3.5900 16 7 2.5261 4.1522 -4.7972 17 6 2.3229 3.5566 -6.1230 18 6 2.1331 4.7523 -7.0853 19 1 1.0785 5.0039 -7.1979 20 6 2.7635 4.4679 -8.4241 21 8 3.2187 3.3732 -8.6572 22 8 2.8193 5.4307 -9.3578 23 6 2.8936 5.8755 -6.3429 24 6 2.8567 5.4517 -4.8911 25 8 3.0915 6.1787 -3.9491 26 6 2.7345 4.0734 -2.3920 27 6 2.6095 3.3868 -1.2021 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8229 -0.0516 1.0318 34 1 1.4587 0.4354 -2.4030 35 1 1.6732 1.6653 -4.5221 36 1 3.1963 2.9716 -6.4116 37 1 1.4315 2.9293 -6.1221 38 1 3.2328 5.2008 -10.2012 39 1 2.3861 6.8312 -6.4744 40 1 3.9229 5.9396 -6.6956 41 1 3.0948 5.0916 -2.3926 42 1 2.8714 3.8675 -0.2711 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070461224.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:41 Heat of formation + Delta-G solvation = -75.221696 kcal Electronic energy + Delta-G solvation = -26319.705900 eV Core-core repulsion = 22458.265317 eV Total energy + Delta-G solvation = -3861.440583 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.36212 -40.10925 -38.54294 -36.79777 -36.41675 -35.92503 -32.97200 -31.89203 -30.52797 -29.62464 -28.10049 -27.27033 -25.11114 -24.20856 -22.80691 -21.67397 -20.85911 -20.44994 -19.33510 -18.52482 -17.84822 -17.60680 -17.38666 -16.34470 -15.85588 -15.53897 -15.23149 -14.57690 -14.25565 -13.97969 -13.90667 -13.64196 -13.61266 -13.48038 -13.45823 -12.99625 -12.73020 -12.30241 -12.05147 -12.00986 -11.88434 -11.80143 -11.66312 -11.31009 -11.14217 -11.03378 -10.99512 -10.50820 -10.39992 -10.28294 -9.99997 -9.70098 -9.27459 -8.91860 -8.21199 -8.08681 -6.85861 -6.25532 -3.84201 1.70565 2.11079 2.34631 2.40942 2.92224 3.12338 3.28372 3.32405 3.47593 3.80504 4.04435 4.16623 4.47142 4.54300 4.62472 4.77679 4.89492 5.05481 5.20153 5.26625 5.35579 5.52172 5.61498 5.73761 5.85564 6.02702 6.07320 6.09221 6.16228 6.29689 6.34674 6.41720 6.66872 6.83426 6.89951 6.94057 6.97770 7.32438 7.40989 7.41527 7.62606 7.72467 7.91798 8.06258 8.30243 8.62182 9.23274 9.53724 10.51398 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025779 B = 0.002861 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.895517 B = 9784.204596 C =10461.975911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.099 3.901 3 N -0.451 5.451 4 C -0.400 4.400 5 H 0.082 0.918 6 C 0.006 3.994 7 N -0.866 5.866 8 Si 1.070 2.930 9 H -0.284 1.284 10 H -0.280 1.280 11 H -0.283 1.283 12 C 0.204 3.796 13 C -0.219 4.219 14 C -0.090 4.090 15 C 0.025 3.975 16 N -0.537 5.537 17 C 0.112 3.888 18 C -0.098 4.098 19 H 0.134 0.866 20 C 0.494 3.506 21 O -0.505 6.505 22 O -0.511 6.511 23 C -0.138 4.138 24 C 0.505 3.495 25 O -0.516 6.516 26 C -0.088 4.088 27 C -0.185 4.185 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.091 0.909 33 H 0.278 0.722 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.414 0.586 39 H 0.116 0.884 40 H 0.108 0.892 41 H 0.139 0.861 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.316 6.002 -18.430 19.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.025 4.025 3 N -0.139 5.139 4 C -0.527 4.527 5 H 0.100 0.900 6 C -0.202 4.202 7 N -0.498 5.498 8 Si 0.896 3.104 9 H -0.210 1.210 10 H -0.205 1.205 11 H -0.209 1.209 12 C 0.089 3.911 13 C -0.243 4.243 14 C -0.111 4.111 15 C -0.068 4.068 16 N -0.261 5.261 17 C -0.011 4.011 18 C -0.117 4.117 19 H 0.151 0.849 20 C 0.335 3.665 21 O -0.392 6.392 22 O -0.323 6.323 23 C -0.179 4.179 24 C 0.293 3.707 25 O -0.393 6.393 26 C -0.109 4.109 27 C -0.209 4.209 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.109 0.891 33 H 0.089 0.911 34 H 0.129 0.871 35 H 0.124 0.876 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.273 0.727 39 H 0.134 0.866 40 H 0.126 0.874 41 H 0.157 0.843 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.978 5.523 -15.705 17.116 hybrid contribution -0.048 0.117 -2.398 2.401 sum -4.025 5.640 -18.103 19.384 Atomic orbital electron populations 1.22113 0.97439 1.00366 1.02003 1.21496 0.93266 0.85253 1.02478 1.42581 1.57631 1.10918 1.02771 1.20166 1.44909 0.96814 0.90854 0.90016 1.26352 0.92569 0.95912 1.05349 1.70802 1.27312 1.27875 1.23860 0.83490 0.76705 0.76297 0.73884 1.21032 1.20477 1.20877 1.18211 0.94317 0.92531 0.86052 1.20196 1.13297 0.99851 0.91001 1.20176 1.01131 0.92529 0.97250 1.17114 1.13217 0.93278 0.83189 1.45388 1.65440 1.10026 1.05289 1.22040 1.04558 0.94053 0.80450 1.21929 1.02663 0.98213 0.88918 0.84868 1.22835 0.75928 0.81788 0.85910 1.90773 1.43952 1.24600 1.79918 1.84518 1.75570 1.44358 1.27882 1.22301 1.03166 0.99324 0.93061 1.20565 0.77683 0.81685 0.90771 1.90648 1.49606 1.56521 1.42535 1.21147 0.98857 1.00643 0.90250 1.20474 1.08626 0.94228 0.97529 0.92367 0.93218 0.93155 0.92979 0.89064 0.91144 0.87097 0.87633 0.88847 0.88822 0.72699 0.86582 0.87384 0.84347 0.85964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 10.13 37.16 0.38 -2.61 16 2 C 0.10 2.15 4.84 -4.04 -0.02 2.13 16 3 N -0.45 -10.92 2.47 -113.12 -0.28 -11.20 16 4 C -0.40 -10.43 8.50 -15.13 -0.13 -10.56 16 5 H 0.08 2.17 6.72 -52.49 -0.35 1.81 16 6 C 0.01 0.16 4.69 -17.45 -0.08 0.08 16 7 N -0.87 -23.63 12.25 55.49 0.68 -22.95 16 8 Si 1.07 23.00 30.01 -169.99 -5.10 17.90 16 9 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 10 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 11 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 12 C 0.20 4.70 6.50 -83.79 -0.54 4.16 16 13 C -0.22 -4.41 8.82 -39.36 -0.35 -4.76 16 14 C -0.09 -1.62 9.41 -39.42 -0.37 -1.99 16 15 C 0.03 0.47 6.60 -83.61 -0.55 -0.08 16 16 N -0.54 -8.10 3.14 -112.10 -0.35 -8.45 16 17 C 0.11 1.22 5.82 -3.03 -0.02 1.20 16 18 C -0.10 -0.77 3.67 -90.05 -0.33 -1.10 16 19 H 0.13 0.75 8.14 -51.93 -0.42 0.32 16 20 C 0.49 3.92 7.55 36.00 0.27 4.20 16 21 O -0.51 -5.62 16.33 -18.75 -0.31 -5.93 16 22 O -0.51 -2.73 13.41 -39.25 -0.53 -3.25 16 23 C -0.14 -1.26 6.39 -26.74 -0.17 -1.43 16 24 C 0.51 7.50 7.92 -10.86 -0.09 7.41 16 25 O -0.52 -9.69 14.81 5.54 0.08 -9.61 16 26 C -0.09 -1.87 9.28 -39.42 -0.37 -2.24 16 27 C -0.18 -4.25 9.25 -39.36 -0.36 -4.61 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.05 0.90 7.67 -51.93 -0.40 0.50 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 1.05 6.48 -51.93 -0.34 0.72 16 32 H 0.09 2.16 5.50 -51.93 -0.29 1.88 16 33 H 0.28 7.70 7.34 -40.82 -0.30 7.40 16 34 H 0.11 2.08 6.09 -52.48 -0.32 1.76 16 35 H 0.11 1.56 6.73 -52.48 -0.35 1.21 16 36 H 0.09 1.08 7.07 -51.92 -0.37 0.71 16 37 H 0.09 0.90 7.22 -51.93 -0.37 0.53 16 38 H 0.41 0.56 9.10 45.56 0.41 0.97 16 39 H 0.12 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.11 0.89 7.89 -51.93 -0.41 0.48 16 41 H 0.14 2.98 5.24 -52.48 -0.28 2.71 16 42 H 0.12 2.92 6.36 -52.48 -0.33 2.59 16 LS Contribution 345.10 15.07 5.20 5.20 Total: -1.00 -32.51 345.10 -7.51 -40.02 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -4.18 Total: 8.46 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -2.73 Total: -10.20 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: 0.05 Total: -42.60 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.75 Total: -18.79 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.10 Total: 17.90 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.51 -7.51 -40.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070461224.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.200 kcal (2) G-P(sol) polarization free energy of solvation -32.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds