Wall clock time and date at job start Fri Apr 10 2020 18:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.46922 * 2 1 4 4 C 1.36833 * 119.99879 * 95.29919 * 3 2 1 5 5 H 1.08000 * 120.00008 * 213.36885 * 4 3 2 6 6 C 1.38755 * 119.99986 * 33.36402 * 4 3 2 7 7 N 1.31622 * 119.99948 * 30.01314 * 6 4 3 8 8 Si 1.86804 * 120.00222 * 210.01043 * 6 4 3 9 9 H 1.48500 * 109.47132 * 270.00080 * 8 6 4 10 10 H 1.48504 * 109.47086 * 150.00022 * 8 6 4 11 11 H 1.48498 * 109.46887 * 30.00406 * 8 6 4 12 12 C 1.39348 * 120.00205 * 275.29927 * 3 2 1 13 13 C 1.39108 * 120.02128 * 359.72914 * 12 3 2 14 14 C 1.37953 * 119.98313 * 179.71907 * 13 12 3 15 15 C 1.38949 * 120.01703 * 0.55130 * 14 13 12 16 16 N 1.39984 * 119.98033 * 179.69977 * 15 14 13 17 17 C 1.46762 * 124.35015 * 353.89138 * 16 15 14 18 18 C 1.54657 * 105.38476 * 162.85602 * 17 16 15 19 19 H 1.08999 * 111.19146 * 267.59771 * 18 17 16 20 20 C 1.50692 * 110.82439 * 143.77629 * 18 17 16 21 21 O 1.20827 * 120.00218 * 6.35144 * 20 18 17 22 22 O 1.34228 * 119.99977 * 186.34938 * 20 18 17 23 23 C 1.54632 * 101.68426 * 25.76447 * 18 17 16 24 24 C 1.34415 * 124.34958 * 174.19336 * 16 15 14 25 25 O 1.21296 * 124.94627 * 0.42139 * 24 16 15 26 26 C 1.38956 * 120.03750 * 359.72099 * 15 14 13 27 27 C 1.37942 * 120.01892 * 0.02562 * 26 15 14 28 28 H 1.09002 * 109.47393 * 299.99446 * 1 2 3 29 29 H 1.09003 * 109.47332 * 59.99822 * 1 2 3 30 30 H 1.09001 * 109.46901 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47393 * 240.00554 * 2 1 3 32 32 H 1.08996 * 109.47684 * 120.00105 * 2 1 3 33 33 H 0.96996 * 120.00016 * 3.77270 * 7 6 4 34 34 H 1.08005 * 120.00719 * 359.97438 * 13 12 3 35 35 H 1.08005 * 119.99005 * 180.29238 * 14 13 12 36 36 H 1.09008 * 110.24556 * 281.98710 * 17 16 15 37 37 H 1.08998 * 110.24273 * 43.98065 * 17 16 15 38 38 H 0.96708 * 116.99871 * 180.02562 * 22 20 18 39 39 H 1.08997 * 110.48620 * 216.31060 * 23 18 17 40 40 H 1.08996 * 110.59791 * 93.72350 * 23 18 17 41 41 H 1.08005 * 119.98630 * 179.97438 * 26 15 14 42 42 H 1.08004 * 120.00688 * 179.97438 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3495 1.9898 1.1800 5 1 2.1887 3.0505 1.3043 6 6 2.8918 1.2441 2.2168 7 7 3.6198 0.1801 1.9515 8 14 2.5889 1.7502 3.9893 9 1 3.6603 2.6799 4.4287 10 1 2.5935 0.5444 4.8561 11 1 1.2719 2.4286 4.0921 12 6 2.1454 2.0753 -1.2016 13 6 1.8142 1.4553 -2.4020 14 6 1.9349 2.1450 -3.5906 15 6 2.3980 3.4551 -3.5900 16 7 2.5261 4.1522 -4.7972 17 6 2.3229 3.5566 -6.1230 18 6 2.1331 4.7523 -7.0853 19 1 1.0785 5.0039 -7.1979 20 6 2.7635 4.4679 -8.4241 21 8 3.2187 3.3732 -8.6572 22 8 2.8193 5.4307 -9.3578 23 6 2.8936 5.8755 -6.3429 24 6 2.8567 5.4517 -4.8911 25 8 3.0915 6.1787 -3.9491 26 6 2.7345 4.0734 -2.3920 27 6 2.6095 3.3868 -1.2021 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8229 -0.0516 1.0318 34 1 1.4587 0.4354 -2.4030 35 1 1.6732 1.6653 -4.5221 36 1 3.1963 2.9716 -6.4116 37 1 1.4315 2.9293 -6.1221 38 1 3.2328 5.2008 -10.2012 39 1 2.3861 6.8312 -6.4744 40 1 3.9229 5.9396 -6.6956 41 1 3.0948 5.0916 -2.3926 42 1 2.8714 3.8675 -0.2711 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070461224.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:39 Heat of formation + Delta-G solvation = -95.781331 kcal Electronic energy + Delta-G solvation = -26320.597433 eV Core-core repulsion = 22458.265317 eV Total energy + Delta-G solvation = -3862.332116 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -42.30287 -41.01108 -40.14253 -38.01731 -37.47514 -36.98240 -34.39960 -33.48860 -32.13108 -31.20536 -29.18537 -28.65484 -26.57161 -25.43894 -24.36103 -22.98297 -22.33523 -21.46280 -20.68181 -19.66290 -19.15324 -18.70466 -18.25712 -17.81306 -16.94523 -16.59438 -16.25702 -16.21457 -15.78228 -15.57364 -15.23703 -15.10306 -14.74197 -14.67142 -14.42423 -14.33606 -14.11148 -13.85435 -13.46352 -13.45022 -13.03870 -12.83074 -12.73041 -12.59199 -12.50439 -12.46674 -12.21052 -12.03480 -11.96096 -11.66916 -11.50912 -11.41528 -10.72051 -10.60202 -9.87023 -9.75836 -8.83619 -7.98526 -5.82178 0.62511 0.66662 1.12449 1.51170 1.54212 1.67107 1.71277 1.78633 2.12764 2.40865 2.81655 3.03214 3.08569 3.22482 3.25389 3.73838 3.90926 4.08339 4.12198 4.25598 4.37121 4.42078 4.48356 4.50688 4.58938 4.64115 4.67283 4.76399 4.77439 4.80799 4.88714 5.05637 5.27007 5.28586 5.32297 5.42302 5.60517 5.66760 5.72954 5.80339 6.06278 6.24165 6.27052 6.76190 6.97348 7.06543 7.38851 7.66403 8.50308 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025779 B = 0.002861 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.895517 B = 9784.204596 C =10461.975911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.102 3.898 3 N -0.477 5.477 4 C -0.409 4.409 5 H 0.062 0.938 6 C -0.034 4.034 7 N -0.891 5.891 8 Si 1.116 2.884 9 H -0.278 1.278 10 H -0.276 1.276 11 H -0.272 1.272 12 C 0.182 3.818 13 C -0.212 4.212 14 C -0.081 4.081 15 C 0.044 3.956 16 N -0.545 5.545 17 C 0.105 3.895 18 C -0.083 4.083 19 H 0.166 0.834 20 C 0.506 3.494 21 O -0.540 6.540 22 O -0.502 6.502 23 C -0.123 4.123 24 C 0.494 3.506 25 O -0.563 6.563 26 C -0.104 4.104 27 C -0.208 4.208 28 H 0.040 0.960 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.262 0.738 34 H 0.130 0.870 35 H 0.151 0.849 36 H 0.088 0.912 37 H 0.114 0.886 38 H 0.433 0.567 39 H 0.143 0.857 40 H 0.122 0.878 41 H 0.130 0.870 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.755 6.309 -22.075 23.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 N -0.169 5.169 4 C -0.537 4.537 5 H 0.080 0.920 6 C -0.236 4.236 7 N -0.525 5.525 8 Si 0.937 3.063 9 H -0.204 1.204 10 H -0.201 1.201 11 H -0.197 1.197 12 C 0.070 3.930 13 C -0.236 4.236 14 C -0.102 4.102 15 C -0.050 4.050 16 N -0.269 5.269 17 C -0.017 4.017 18 C -0.103 4.103 19 H 0.184 0.816 20 C 0.349 3.651 21 O -0.431 6.431 22 O -0.316 6.316 23 C -0.162 4.162 24 C 0.284 3.716 25 O -0.443 6.443 26 C -0.125 4.125 27 C -0.233 4.233 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.147 0.853 35 H 0.168 0.832 36 H 0.106 0.894 37 H 0.132 0.868 38 H 0.296 0.704 39 H 0.161 0.839 40 H 0.140 0.860 41 H 0.147 0.853 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.424 5.866 -19.456 21.033 hybrid contribution 0.434 0.199 -1.622 1.691 sum -4.991 6.066 -21.078 22.494 Atomic orbital electron populations 1.22010 0.95125 1.02191 1.01388 1.21501 0.95074 0.83898 1.01689 1.42645 1.59938 1.11882 1.02464 1.20163 1.44964 0.96308 0.92292 0.92010 1.27546 0.91896 0.95704 1.08472 1.70912 1.29535 1.29405 1.22665 0.82904 0.77154 0.76201 0.70051 1.20375 1.20063 1.19736 1.18529 0.94965 0.92472 0.87077 1.20495 1.11932 1.00679 0.90508 1.20579 0.99419 0.91937 0.98243 1.17260 1.10104 0.93622 0.84058 1.45636 1.65256 1.10434 1.05593 1.22302 1.05274 0.95473 0.78647 1.21891 1.04396 0.95809 0.88157 0.81628 1.22651 0.74946 0.81411 0.86096 1.90783 1.45514 1.26130 1.80629 1.84470 1.75278 1.43225 1.28620 1.22278 1.04704 1.00809 0.88439 1.21669 0.75897 0.81184 0.92819 1.90627 1.51141 1.57662 1.44835 1.21139 0.99851 1.00470 0.91001 1.20410 1.10448 0.95035 0.97390 0.94055 0.92637 0.90007 0.91902 0.91607 0.92778 0.85270 0.83167 0.89355 0.86828 0.70441 0.83906 0.86045 0.85277 0.88628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.43 10.13 71.98 0.73 -4.70 16 2 C 0.10 4.49 4.84 86.38 0.42 4.91 16 3 N -0.48 -24.08 2.47 -511.79 -1.26 -25.34 16 4 C -0.41 -22.57 8.50 84.04 0.71 -21.85 16 5 H 0.06 3.54 6.72 -2.91 -0.02 3.52 16 6 C -0.03 -1.83 4.69 84.85 0.40 -1.43 16 7 N -0.89 -50.75 12.25 21.64 0.27 -50.48 16 8 Si 1.12 48.10 30.01 68.60 2.06 50.16 16 9 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 10 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 11 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 12 C 0.18 8.61 6.50 38.37 0.25 8.86 16 13 C -0.21 -8.27 8.82 22.41 0.20 -8.07 16 14 C -0.08 -2.70 9.41 22.37 0.21 -2.49 16 15 C 0.04 1.59 6.60 38.18 0.25 1.84 16 16 N -0.55 -15.14 3.14 -627.15 -1.97 -17.11 16 17 C 0.10 1.86 5.82 86.89 0.51 2.36 16 18 C -0.08 -0.92 3.67 -10.42 -0.04 -0.96 16 19 H 0.17 0.85 8.14 -2.39 -0.02 0.83 16 20 C 0.51 5.85 7.55 71.23 0.54 6.39 16 21 O -0.54 -10.20 16.33 21.96 0.36 -9.85 16 22 O -0.50 -3.01 13.41 -51.40 -0.69 -3.70 16 23 C -0.12 -1.76 6.39 30.59 0.20 -1.56 16 24 C 0.49 13.75 7.92 87.90 0.70 14.45 16 25 O -0.56 -21.14 14.81 -3.08 -0.05 -21.18 16 26 C -0.10 -4.54 9.28 22.37 0.21 -4.33 16 27 C -0.21 -10.15 9.25 22.41 0.21 -9.94 16 28 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.05 1.93 7.67 -2.39 -0.02 1.91 16 30 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.06 2.54 6.48 -2.39 -0.02 2.52 16 32 H 0.07 3.24 5.50 -2.39 -0.01 3.22 16 33 H 0.26 15.33 7.34 -92.71 -0.68 14.65 16 34 H 0.13 4.55 6.09 -2.91 -0.02 4.53 16 35 H 0.15 3.69 6.73 -2.91 -0.02 3.67 16 36 H 0.09 1.73 7.07 -2.38 -0.02 1.72 16 37 H 0.11 1.60 7.22 -2.39 -0.02 1.58 16 38 H 0.43 -0.69 9.10 -74.05 -0.67 -1.36 16 39 H 0.14 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.12 1.51 7.89 -2.39 -0.02 1.49 16 41 H 0.13 5.86 5.24 -2.91 -0.02 5.85 16 42 H 0.10 5.03 6.36 -2.91 -0.02 5.01 16 Total: -1.00 -76.37 345.10 4.69 -71.68 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: 0.50 Total: 22.35 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: 5.48 Total: -16.53 kcal Atomic # 7 Polarization: -89.97 SS G_CDS: -2.97 Total: -92.93 kcal Atomic # 8 Polarization: -34.36 SS G_CDS: -0.38 Total: -34.73 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 2.06 Total: 50.16 kcal Total: -76.37 4.69 -71.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070461224.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.104 kcal (2) G-P(sol) polarization free energy of solvation -76.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds