Wall clock time and date at job start Fri Apr 10 2020 18:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46494 * 119.99468 * 2 1 4 4 C 1.50705 * 109.47061 * 274.99495 * 3 2 1 5 5 O 1.21280 * 120.00207 * 355.21296 * 4 3 2 6 6 N 1.34776 * 119.99765 * 175.20437 * 4 3 2 7 7 C 1.46505 * 119.99517 * 185.01089 * 6 4 3 8 8 C 1.50702 * 109.47162 * 270.00002 * 7 6 4 9 9 H 1.08000 * 119.99918 * 0.02562 * 8 7 6 10 10 C 1.37878 * 119.99857 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99943 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00011 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47164 * 0.02562 * 12 10 8 14 14 H 1.48495 * 109.47443 * 119.99878 * 12 10 8 15 15 H 1.48496 * 109.47271 * 240.00136 * 12 10 8 16 16 C 1.46494 * 120.00225 * 5.01752 * 6 4 3 17 17 C 1.52999 * 109.47509 * 93.84269 * 16 6 4 18 18 C 1.53787 * 113.61343 * 88.19238 * 17 16 6 19 19 C 1.54058 * 86.98170 * 140.02443 * 18 17 16 20 20 C 1.53777 * 113.61867 * 185.80518 * 17 16 6 21 21 S 1.65598 * 119.99885 * 179.97438 * 2 1 3 22 22 C 1.81391 * 104.45080 * 270.00022 * 21 2 1 23 23 O 1.42098 * 104.27704 * 26.07262 * 21 2 1 24 24 O 1.42100 * 104.27380 * 153.92436 * 21 2 1 25 25 H 1.08997 * 109.47696 * 90.00163 * 1 2 3 26 26 H 1.09000 * 109.47087 * 210.00255 * 1 2 3 27 27 H 1.08999 * 109.47468 * 329.99957 * 1 2 3 28 28 H 1.09002 * 109.47031 * 155.00639 * 3 2 1 29 29 H 1.09001 * 109.47951 * 34.99947 * 3 2 1 30 30 H 1.08996 * 109.47637 * 30.00644 * 7 6 4 31 31 H 1.09004 * 109.47083 * 150.00611 * 7 6 4 32 32 H 0.97004 * 119.99794 * 179.97438 * 11 10 8 33 33 H 1.08998 * 109.46940 * 333.84051 * 16 6 4 34 34 H 1.09004 * 109.46974 * 213.84492 * 16 6 4 35 35 H 1.09004 * 112.84674 * 317.00077 * 17 16 6 36 36 H 1.08991 * 113.61356 * 254.61309 * 18 17 16 37 37 H 1.09002 * 113.61310 * 25.52631 * 18 17 16 38 38 H 1.09003 * 113.61697 * 220.02394 * 19 18 17 39 39 H 1.08995 * 113.61157 * 89.11791 * 19 18 17 40 40 H 1.09000 * 113.61295 * 334.48035 * 20 17 16 41 41 H 1.08996 * 113.61911 * 105.29799 * 20 17 16 42 42 H 1.08999 * 109.47513 * 60.00085 * 22 21 2 43 43 H 1.09006 * 109.47377 * 180.02562 * 22 21 2 44 44 H 1.09004 * 109.46928 * 300.00087 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3414 1.7656 -1.4155 5 8 1.9553 1.0825 -2.3402 6 7 2.8990 2.9693 -1.6536 7 6 2.9397 3.5005 -3.0184 8 6 4.2134 3.0584 -3.6918 9 1 4.9215 2.4429 -3.1568 10 6 4.4746 3.4397 -4.9908 11 7 3.6125 4.1896 -5.6419 12 14 6.0530 2.8911 -5.8257 13 1 6.8477 2.0607 -4.8854 14 1 5.7225 2.0920 -7.0329 15 1 6.8433 4.0839 -6.2228 16 6 3.4646 3.7463 -0.5480 17 6 4.9621 3.4546 -0.4331 18 6 5.8367 4.3694 -1.3067 19 6 6.8255 4.4151 -0.1262 20 6 5.6261 4.1129 0.7877 21 16 2.2930 -1.4341 0.0006 22 6 2.5193 -1.8254 1.7573 23 8 1.3970 -2.3563 -0.6042 24 8 3.5394 -1.1194 -0.6048 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 3.1857 1.1178 0.4342 29 1 1.6501 2.0044 0.5894 30 1 2.0833 3.1267 -3.5795 31 1 2.9053 4.5895 -2.9855 32 1 3.7965 4.4582 -6.5557 33 1 2.9680 3.4693 0.3820 34 1 3.3149 4.8093 -0.7371 35 1 5.1963 2.3953 -0.5392 36 1 6.2353 3.8759 -2.1930 37 1 5.3762 5.3323 -1.5280 38 1 7.2632 5.3996 0.0390 39 1 7.5690 3.6185 -0.1485 40 1 5.1082 5.0058 1.1379 41 1 5.8535 3.4129 1.5916 42 1 1.5452 -1.9178 2.2375 43 1 3.0626 -2.7655 1.8532 44 1 3.0866 -1.0277 2.2370 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075127565.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:48 Heat of formation + Delta-G solvation = -71.320611 kcal Electronic energy + Delta-G solvation = -26582.562289 eV Core-core repulsion = 22856.734821 eV Total energy + Delta-G solvation = -3725.827468 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.42472 -38.07436 -37.03542 -35.89347 -35.63028 -34.44111 -32.53516 -29.64531 -29.18881 -28.09195 -26.61198 -25.09404 -24.96039 -22.57387 -22.52044 -19.17615 -18.96752 -18.36631 -17.60327 -16.83577 -16.43628 -16.29792 -15.93359 -15.33138 -14.88246 -14.66256 -14.43480 -13.99734 -13.89402 -13.57394 -13.39099 -13.26299 -12.80967 -12.70990 -12.47263 -12.32532 -12.00651 -11.96121 -11.93909 -11.61433 -11.55335 -11.48593 -11.29663 -11.07830 -10.97335 -10.73978 -10.55543 -10.30929 -9.99827 -9.90180 -9.69067 -9.63554 -9.37097 -8.49647 -8.33002 -7.55776 -5.94207 -3.95120 0.21154 2.60809 3.36391 3.41568 3.45387 3.51324 3.93048 4.00945 4.11968 4.48417 4.54567 4.71431 4.78878 4.96217 5.00004 5.11000 5.20075 5.28779 5.31261 5.35519 5.41173 5.43580 5.50264 5.74615 5.83409 5.84084 5.92491 5.99253 6.07803 6.16075 6.17167 6.35167 6.43612 6.68039 6.89033 6.98233 7.13577 7.50965 7.64649 8.03586 8.35506 8.47672 9.02545 9.17746 9.68079 11.14423 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012460 B = 0.005049 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.596341 B = 5544.591735 C = 6471.669053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.984 5.984 3 C 0.105 3.895 4 C 0.489 3.511 5 O -0.523 6.523 6 N -0.597 5.597 7 C 0.249 3.751 8 C -0.507 4.507 9 H 0.062 0.938 10 C 0.059 3.941 11 N -0.899 5.899 12 Si 0.890 3.110 13 H -0.272 1.272 14 H -0.285 1.285 15 H -0.285 1.285 16 C 0.123 3.877 17 C -0.122 4.122 18 C -0.118 4.118 19 C -0.149 4.149 20 C -0.136 4.136 21 S 2.608 3.392 22 C -0.680 4.680 23 O -0.951 6.951 24 O -0.937 6.937 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.039 0.961 31 H 0.030 0.970 32 H 0.260 0.740 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.059 0.941 42 H 0.125 0.875 43 H 0.125 0.875 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.178 -3.449 20.751 21.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.821 5.821 3 C -0.025 4.025 4 C 0.273 3.727 5 O -0.399 6.399 6 N -0.330 5.330 7 C 0.130 3.870 8 C -0.546 4.546 9 H 0.080 0.920 10 C -0.142 4.142 11 N -0.539 5.539 12 Si 0.718 3.282 13 H -0.197 1.197 14 H -0.211 1.211 15 H -0.212 1.212 16 C -0.002 4.002 17 C -0.142 4.142 18 C -0.155 4.155 19 C -0.187 4.187 20 C -0.175 4.175 21 S 2.699 3.301 22 C -0.828 4.828 23 O -0.941 6.941 24 O -0.927 6.927 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.121 0.879 29 H 0.119 0.881 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.078 0.922 42 H 0.144 0.856 43 H 0.144 0.856 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.178 -4.199 19.321 19.892 hybrid contribution 0.903 -0.025 0.158 0.917 sum -1.275 -4.224 19.480 19.973 Atomic orbital electron populations 1.21450 0.78028 1.02040 1.03209 1.57070 1.15247 1.20341 1.89454 1.21274 0.97790 0.86351 0.97038 1.20670 0.79292 0.81968 0.90787 1.90686 1.49331 1.54618 1.45271 1.48243 1.56548 1.17842 1.10338 1.19253 0.98203 0.93678 0.75859 1.21458 1.04275 1.31114 0.97734 0.92025 1.24889 0.96855 0.95325 0.97114 1.69938 1.35470 1.36919 1.11579 0.86564 0.83607 0.78295 0.79740 1.19706 1.21082 1.21156 1.21504 0.92766 0.96714 0.89177 1.22955 0.94765 1.00304 0.96156 1.22904 0.95885 0.99716 0.97010 1.22917 0.96656 1.00903 0.98189 1.22924 0.97805 1.00369 0.96354 1.05161 0.74369 0.73392 0.77186 1.30670 1.11402 1.11925 1.28818 1.93593 1.64778 1.62681 1.73089 1.93669 1.43985 1.82464 1.72588 0.91603 0.91337 0.91229 0.87907 0.88072 0.94290 0.95191 0.93037 0.91937 0.90701 0.89229 0.90160 0.90357 0.92218 0.90852 0.90442 0.92234 0.85633 0.85621 0.85481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.08 10.24 59.85 0.61 1.69 16 2 N -0.98 -12.97 2.61 -123.05 -0.32 -13.29 16 3 C 0.10 1.43 4.26 -5.19 -0.02 1.41 16 4 C 0.49 10.02 7.72 -10.98 -0.08 9.94 16 5 O -0.52 -13.47 16.07 5.56 0.09 -13.38 16 6 N -0.60 -12.19 2.46 -175.06 -0.43 -12.62 16 7 C 0.25 6.39 5.17 -5.19 -0.03 6.37 16 8 C -0.51 -14.15 7.67 -34.44 -0.26 -14.41 16 9 H 0.06 1.76 7.16 -52.49 -0.38 1.38 16 10 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 11 N -0.90 -26.87 13.29 55.43 0.74 -26.14 16 12 Si 0.89 22.45 29.54 -169.99 -5.02 17.43 16 13 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 16 C 0.12 1.85 5.24 -4.05 -0.02 1.83 16 17 C -0.12 -1.86 3.79 -89.81 -0.34 -2.20 16 18 C -0.12 -1.97 6.67 -25.77 -0.17 -2.14 16 19 C -0.15 -1.97 8.09 -25.77 -0.21 -2.17 16 20 C -0.14 -1.58 7.64 -25.92 -0.20 -1.78 16 21 S 2.61 35.44 5.96 -107.50 -0.64 34.80 16 22 C -0.68 -4.93 10.99 101.05 1.11 -3.82 16 23 O -0.95 -15.91 17.09 -57.54 -0.98 -16.90 16 24 O -0.94 -17.13 16.99 -57.54 -0.98 -18.11 16 25 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 26 H 0.07 0.57 7.79 -51.93 -0.40 0.16 16 27 H 0.07 0.57 7.94 -51.93 -0.41 0.15 16 28 H 0.10 1.21 7.61 -51.93 -0.40 0.81 16 29 H 0.10 0.97 7.17 -51.93 -0.37 0.60 16 30 H 0.04 1.15 7.50 -51.93 -0.39 0.76 16 31 H 0.03 0.77 7.93 -51.93 -0.41 0.36 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.06 0.69 6.19 -51.93 -0.32 0.37 16 34 H 0.07 1.10 7.64 -51.93 -0.40 0.71 16 35 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 36 H 0.08 1.61 6.90 -51.93 -0.36 1.25 16 37 H 0.08 1.32 7.89 -51.93 -0.41 0.91 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.12 0.66 8.14 -51.92 -0.42 0.23 16 43 H 0.13 0.77 8.14 -51.92 -0.42 0.35 16 44 H 0.13 0.71 8.14 -51.92 -0.42 0.29 16 LS Contribution 371.51 15.07 5.60 5.60 Total: -1.00 -38.99 371.51 -8.85 -47.84 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -7.18 Total: -1.52 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: 0.29 Total: -3.70 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: -0.01 Total: -52.06 kcal Atomic # 8 Polarization: -46.52 SS G_CDS: -1.87 Total: -48.39 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Atomic # 16 Polarization: 35.44 SS G_CDS: -0.64 Total: 34.80 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -38.99 -8.85 -47.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075127565.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.482 kcal (2) G-P(sol) polarization free energy of solvation -38.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds