Wall clock time and date at job start Fri Apr 10 2020 18:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46494 * 119.99468 * 2 1 4 4 C 1.50705 * 109.47061 * 274.99495 * 3 2 1 5 5 O 1.21280 * 120.00207 * 355.21296 * 4 3 2 6 6 N 1.34776 * 119.99765 * 175.20437 * 4 3 2 7 7 C 1.46505 * 119.99517 * 185.01089 * 6 4 3 8 8 C 1.50702 * 109.47162 * 270.00002 * 7 6 4 9 9 H 1.08000 * 119.99918 * 0.02562 * 8 7 6 10 10 C 1.37878 * 119.99857 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99943 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00011 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47164 * 0.02562 * 12 10 8 14 14 H 1.48495 * 109.47443 * 119.99878 * 12 10 8 15 15 H 1.48496 * 109.47271 * 240.00136 * 12 10 8 16 16 C 1.46494 * 120.00225 * 5.01752 * 6 4 3 17 17 C 1.52999 * 109.47509 * 93.84269 * 16 6 4 18 18 C 1.53787 * 113.61343 * 88.19238 * 17 16 6 19 19 C 1.54058 * 86.98170 * 140.02443 * 18 17 16 20 20 C 1.53777 * 113.61867 * 185.80518 * 17 16 6 21 21 S 1.65598 * 119.99885 * 179.97438 * 2 1 3 22 22 C 1.81391 * 104.45080 * 270.00022 * 21 2 1 23 23 O 1.42098 * 104.27704 * 26.07262 * 21 2 1 24 24 O 1.42100 * 104.27380 * 153.92436 * 21 2 1 25 25 H 1.08997 * 109.47696 * 90.00163 * 1 2 3 26 26 H 1.09000 * 109.47087 * 210.00255 * 1 2 3 27 27 H 1.08999 * 109.47468 * 329.99957 * 1 2 3 28 28 H 1.09002 * 109.47031 * 155.00639 * 3 2 1 29 29 H 1.09001 * 109.47951 * 34.99947 * 3 2 1 30 30 H 1.08996 * 109.47637 * 30.00644 * 7 6 4 31 31 H 1.09004 * 109.47083 * 150.00611 * 7 6 4 32 32 H 0.97004 * 119.99794 * 179.97438 * 11 10 8 33 33 H 1.08998 * 109.46940 * 333.84051 * 16 6 4 34 34 H 1.09004 * 109.46974 * 213.84492 * 16 6 4 35 35 H 1.09004 * 112.84674 * 317.00077 * 17 16 6 36 36 H 1.08991 * 113.61356 * 254.61309 * 18 17 16 37 37 H 1.09002 * 113.61310 * 25.52631 * 18 17 16 38 38 H 1.09003 * 113.61697 * 220.02394 * 19 18 17 39 39 H 1.08995 * 113.61157 * 89.11791 * 19 18 17 40 40 H 1.09000 * 113.61295 * 334.48035 * 20 17 16 41 41 H 1.08996 * 113.61911 * 105.29799 * 20 17 16 42 42 H 1.08999 * 109.47513 * 60.00085 * 22 21 2 43 43 H 1.09006 * 109.47377 * 180.02562 * 22 21 2 44 44 H 1.09004 * 109.46928 * 300.00087 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3414 1.7656 -1.4155 5 8 1.9553 1.0825 -2.3402 6 7 2.8990 2.9693 -1.6536 7 6 2.9397 3.5005 -3.0184 8 6 4.2134 3.0584 -3.6918 9 1 4.9215 2.4429 -3.1568 10 6 4.4746 3.4397 -4.9908 11 7 3.6125 4.1896 -5.6419 12 14 6.0530 2.8911 -5.8257 13 1 6.8477 2.0607 -4.8854 14 1 5.7225 2.0920 -7.0329 15 1 6.8433 4.0839 -6.2228 16 6 3.4646 3.7463 -0.5480 17 6 4.9621 3.4546 -0.4331 18 6 5.8367 4.3694 -1.3067 19 6 6.8255 4.4151 -0.1262 20 6 5.6261 4.1129 0.7877 21 16 2.2930 -1.4341 0.0006 22 6 2.5193 -1.8254 1.7573 23 8 1.3970 -2.3563 -0.6042 24 8 3.5394 -1.1194 -0.6048 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 3.1857 1.1178 0.4342 29 1 1.6501 2.0044 0.5894 30 1 2.0833 3.1267 -3.5795 31 1 2.9053 4.5895 -2.9855 32 1 3.7965 4.4582 -6.5557 33 1 2.9680 3.4693 0.3820 34 1 3.3149 4.8093 -0.7371 35 1 5.1963 2.3953 -0.5392 36 1 6.2353 3.8759 -2.1930 37 1 5.3762 5.3323 -1.5280 38 1 7.2632 5.3996 0.0390 39 1 7.5690 3.6185 -0.1485 40 1 5.1082 5.0058 1.1379 41 1 5.8535 3.4129 1.5916 42 1 1.5452 -1.9178 2.2375 43 1 3.0626 -2.7655 1.8532 44 1 3.0866 -1.0277 2.2370 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075127565.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:47 Heat of formation + Delta-G solvation = -102.271626 kcal Electronic energy + Delta-G solvation = -26583.904426 eV Core-core repulsion = 22856.734821 eV Total energy + Delta-G solvation = -3727.169605 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.89434 -39.33048 -38.18332 -37.04407 -36.78415 -36.10079 -34.66174 -30.76380 -30.27754 -29.37994 -28.19597 -26.22148 -26.19645 -24.42230 -23.79049 -20.47900 -20.12476 -19.62082 -18.73074 -18.52212 -18.12926 -17.48935 -17.12281 -16.82614 -16.41590 -16.02203 -15.92204 -15.25047 -15.09061 -14.76670 -14.41045 -14.10275 -13.99674 -13.88861 -13.75493 -13.73191 -13.33577 -13.25368 -13.12771 -13.11572 -13.04046 -12.86906 -12.69875 -12.53506 -12.48512 -12.27647 -11.90750 -11.85072 -11.73566 -11.36069 -11.12827 -10.90055 -10.84725 -10.60168 -9.82541 -9.29357 -8.18295 -6.26518 -0.72096 1.28983 1.32821 1.43524 1.63788 1.90623 2.35007 2.51113 3.09327 3.11722 3.17848 3.65178 3.77670 3.87457 4.01117 4.06521 4.12179 4.16758 4.20894 4.32318 4.42713 4.61896 4.68236 4.69809 4.81865 4.91572 5.00707 5.04034 5.06859 5.08103 5.11089 5.14956 5.23871 5.29018 5.47516 5.49608 5.53361 5.69041 5.79000 5.96142 6.15392 6.78878 6.89726 7.36197 7.59443 8.89004 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012460 B = 0.005049 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.596341 B = 5544.591735 C = 6471.669053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.988 5.988 3 C 0.113 3.887 4 C 0.471 3.529 5 O -0.594 6.594 6 N -0.602 5.602 7 C 0.266 3.734 8 C -0.506 4.506 9 H 0.048 0.952 10 C 0.008 3.992 11 N -0.931 5.931 12 Si 0.947 3.053 13 H -0.274 1.274 14 H -0.287 1.287 15 H -0.267 1.267 16 C 0.116 3.884 17 C -0.127 4.127 18 C -0.138 4.138 19 C -0.142 4.142 20 C -0.107 4.107 21 S 2.585 3.415 22 C -0.630 4.630 23 O -1.003 7.003 24 O -1.003 7.003 25 H 0.019 0.981 26 H 0.096 0.904 27 H 0.106 0.894 28 H 0.129 0.871 29 H 0.158 0.842 30 H -0.011 1.011 31 H 0.024 0.976 32 H 0.263 0.737 33 H 0.120 0.880 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.031 0.969 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.160 0.840 43 H 0.146 0.854 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.568 -3.160 26.180 26.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.824 5.824 3 C -0.016 4.016 4 C 0.259 3.741 5 O -0.475 6.475 6 N -0.333 5.333 7 C 0.144 3.856 8 C -0.545 4.545 9 H 0.066 0.934 10 C -0.190 4.190 11 N -0.572 5.572 12 Si 0.773 3.227 13 H -0.198 1.198 14 H -0.213 1.213 15 H -0.192 1.192 16 C -0.006 4.006 17 C -0.147 4.147 18 C -0.175 4.175 19 C -0.180 4.180 20 C -0.144 4.144 21 S 2.684 3.316 22 C -0.785 4.785 23 O -0.994 6.994 24 O -0.993 6.993 25 H 0.038 0.962 26 H 0.115 0.885 27 H 0.125 0.875 28 H 0.147 0.853 29 H 0.175 0.825 30 H 0.007 0.993 31 H 0.042 0.958 32 H 0.072 0.928 33 H 0.138 0.862 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.050 0.950 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.121 0.879 41 H 0.106 0.894 42 H 0.179 0.821 43 H 0.164 0.836 44 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.561 -3.878 24.736 25.087 hybrid contribution 0.695 -0.148 -1.485 1.647 sum -0.866 -4.026 23.251 23.613 Atomic orbital electron populations 1.21633 0.77051 1.05274 1.01356 1.56997 1.15937 1.19798 1.89661 1.21463 1.00375 0.87671 0.92051 1.22188 0.77409 0.80971 0.93577 1.90652 1.52056 1.56489 1.48257 1.48267 1.56809 1.18738 1.09502 1.18650 0.95077 0.92937 0.78938 1.21600 1.04610 1.30250 0.97992 0.93381 1.25652 0.99840 0.95608 0.97923 1.70038 1.37116 1.38107 1.11965 0.85669 0.80338 0.78371 0.78321 1.19837 1.21298 1.19173 1.21918 0.93024 0.96350 0.89327 1.22923 0.94690 0.98791 0.98249 1.22941 0.98374 0.99393 0.96812 1.22887 0.96814 1.01863 0.96388 1.22822 0.95355 1.01253 0.94999 1.05466 0.72739 0.72987 0.80445 1.30240 1.14436 1.13945 1.19879 1.93522 1.65452 1.63771 1.76630 1.93590 1.46061 1.83148 1.76502 0.96170 0.88522 0.87514 0.85322 0.82490 0.99322 0.95792 0.92826 0.86240 0.90343 0.91583 0.94991 0.91103 0.90592 0.91054 0.87922 0.89431 0.82138 0.83613 0.82177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.87 10.24 127.77 1.31 3.18 16 2 N -0.99 -24.24 2.61 -543.22 -1.42 -25.66 16 3 C 0.11 2.77 4.26 85.64 0.36 3.13 16 4 C 0.47 19.71 7.72 87.66 0.68 20.39 16 5 O -0.59 -32.79 16.07 -3.03 -0.05 -32.84 16 6 N -0.60 -25.09 2.46 -826.15 -2.03 -27.12 16 7 C 0.27 14.53 5.17 85.63 0.44 14.97 16 8 C -0.51 -29.97 7.67 25.60 0.20 -29.78 16 9 H 0.05 2.92 7.16 -2.91 -0.02 2.90 16 10 C 0.01 0.45 5.46 84.65 0.46 0.91 16 11 N -0.93 -58.32 13.29 21.45 0.28 -58.03 16 12 Si 0.95 48.14 29.54 68.60 2.03 50.17 16 13 H -0.27 -13.81 7.11 99.48 0.71 -13.11 16 14 H -0.29 -14.61 7.11 99.48 0.71 -13.91 16 15 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 16 C 0.12 3.24 5.24 86.38 0.45 3.69 16 17 C -0.13 -3.65 3.79 -10.27 -0.04 -3.69 16 18 C -0.14 -4.65 6.67 31.22 0.21 -4.44 16 19 C -0.14 -3.42 8.09 31.22 0.25 -3.17 16 20 C -0.11 -1.98 7.64 31.12 0.24 -1.75 16 21 S 2.58 67.74 5.96 -56.49 -0.34 67.40 16 22 C -0.63 -5.50 10.99 113.37 1.25 -4.25 16 23 O -1.00 -34.49 17.09 -127.65 -2.18 -36.68 16 24 O -1.00 -37.60 16.99 -127.65 -2.17 -39.76 16 25 H 0.02 0.57 8.14 -2.39 -0.02 0.56 16 26 H 0.10 1.38 7.79 -2.39 -0.02 1.36 16 27 H 0.11 1.34 7.94 -2.39 -0.02 1.32 16 28 H 0.13 2.51 7.61 -2.39 -0.02 2.49 16 29 H 0.16 2.06 7.17 -2.39 -0.02 2.04 16 30 H -0.01 -0.73 7.50 -2.39 -0.02 -0.74 16 31 H 0.02 1.32 7.93 -2.39 -0.02 1.30 16 32 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 33 H 0.12 1.98 6.19 -2.39 -0.01 1.97 16 34 H 0.08 2.16 7.64 -2.39 -0.02 2.14 16 35 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 36 H 0.03 1.35 6.90 -2.39 -0.02 1.33 16 37 H 0.07 2.43 7.89 -2.39 -0.02 2.42 16 38 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.10 1.47 8.10 -2.39 -0.02 1.45 16 41 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.16 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.15 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.16 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -99.25 371.51 0.91 -98.34 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: 0.98 Total: 5.00 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: 5.81 Total: -0.81 kcal Atomic # 7 Polarization: -107.65 SS G_CDS: -3.16 Total: -110.82 kcal Atomic # 8 Polarization: -104.88 SS G_CDS: -4.40 Total: -109.28 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 2.03 Total: 50.17 kcal Atomic # 16 Polarization: 67.74 SS G_CDS: -0.34 Total: 67.40 kcal Total: -99.25 0.91 -98.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075127565.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.931 kcal (2) G-P(sol) polarization free energy of solvation -99.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds