Wall clock time and date at job start Fri Apr 10 2020 18:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37098 * 120.00081 * 2 1 4 4 H 1.08000 * 119.99677 * 188.59553 * 3 2 1 5 5 C 1.38950 * 119.99969 * 8.31799 * 3 2 1 6 6 N 1.31405 * 120.00014 * 354.69484 * 5 3 2 7 7 Si 1.86805 * 119.99993 * 174.69086 * 5 3 2 8 8 H 1.48495 * 109.46831 * 60.00141 * 7 5 3 9 9 H 1.48494 * 109.47155 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46834 * 300.00160 * 7 5 3 11 11 C 1.34781 * 120.00063 * 180.02562 * 2 1 3 12 12 O 1.21296 * 120.00074 * 185.22474 * 11 2 1 13 13 C 1.50696 * 119.99793 * 5.21551 * 11 2 1 14 14 H 1.09000 * 109.39695 * 30.97943 * 13 11 2 15 15 C 1.53018 * 109.39961 * 271.16665 * 13 11 2 16 16 O 1.43198 * 108.70481 * 190.62332 * 15 13 11 17 17 C 1.42964 * 112.89466 * 68.49228 * 16 15 13 18 18 C 1.50346 * 109.80751 * 310.35980 * 17 16 15 19 19 O 1.21284 * 118.83169 * 195.89431 * 18 17 16 20 20 N 1.33875 * 122.33633 * 15.91722 * 18 17 16 21 21 C 1.46495 * 118.72845 * 178.09714 * 20 18 17 22 22 C 1.50700 * 109.47236 * 92.39865 * 21 20 18 23 23 C 1.38230 * 119.99735 * 274.07271 * 22 21 20 24 24 C 1.38241 * 119.99740 * 179.80937 * 23 22 21 25 25 C 1.38238 * 119.99715 * 0.39956 * 24 23 22 26 26 C 1.38230 * 120.00312 * 359.85562 * 25 24 23 27 27 C 1.38237 * 119.99640 * 94.34421 * 22 21 20 28 28 H 1.09000 * 109.46837 * 56.65392 * 1 2 3 29 29 H 1.08999 * 109.46940 * 176.65654 * 1 2 3 30 30 H 1.09001 * 109.46816 * 296.65688 * 1 2 3 31 31 H 0.97000 * 120.00156 * 179.97438 * 6 5 3 32 32 H 1.09000 * 109.60428 * 310.45475 * 15 13 11 33 33 H 1.08996 * 109.60524 * 70.94246 * 15 13 11 34 34 H 1.08991 * 109.41895 * 190.25133 * 17 16 15 35 35 H 1.09009 * 109.35518 * 70.42070 * 17 16 15 36 36 H 1.09002 * 109.46659 * 212.40034 * 21 20 18 37 37 H 1.08993 * 109.47230 * 332.39432 * 21 20 18 38 38 H 1.08004 * 120.00326 * 359.97438 * 23 22 21 39 39 H 1.07997 * 119.99734 * 180.22955 * 24 23 22 40 40 H 1.08003 * 119.99628 * 179.83619 * 25 24 23 41 41 H 1.07997 * 120.00382 * 179.97438 * 26 25 24 42 42 H 1.07996 * 120.00464 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.2214 1.1925 -0.1398 5 6 1.4667 2.3843 0.1741 6 7 0.1540 2.3884 0.2343 7 14 2.4135 3.9878 0.3227 8 1 3.2124 4.2069 -0.9097 9 1 1.4592 5.1114 0.5009 10 1 3.3217 3.9194 1.4957 11 6 2.1389 -1.1672 -0.0005 12 8 3.3481 -1.1695 0.0951 13 6 1.3901 -2.4695 -0.1197 14 1 0.4901 -2.3164 -0.7153 15 6 0.9985 -2.9602 1.2757 16 8 0.5145 -4.3039 1.1710 17 6 1.5389 -5.2386 0.8238 18 6 2.3067 -4.7343 -0.3664 19 8 3.0105 -5.5088 -0.9795 20 7 2.2415 -3.4606 -0.7733 21 6 3.0556 -3.0444 -1.9179 22 6 2.2498 -3.1816 -3.1840 23 6 2.2063 -4.3933 -3.8477 24 6 1.4639 -4.5202 -5.0069 25 6 0.7717 -3.4330 -5.5068 26 6 0.8195 -2.2198 -4.8459 27 6 1.5587 -2.0940 -3.6845 28 1 -0.3633 0.5649 -0.8585 29 1 -0.3633 -1.0259 -0.0599 30 1 -0.3633 0.4611 0.9185 31 1 -0.3233 3.2240 0.3561 32 1 1.8697 -2.9345 1.9303 33 1 0.2143 -2.3211 1.6815 34 1 1.0856 -6.1998 0.5818 35 1 2.2180 -5.3605 1.6678 36 1 3.3576 -2.0049 -1.7901 37 1 3.9423 -3.6751 -1.9815 38 1 2.7502 -5.2417 -3.4592 39 1 1.4270 -5.4679 -5.5234 40 1 0.1939 -3.5314 -6.4139 41 1 0.2790 -1.3704 -5.2366 42 1 1.5958 -1.1463 -3.1681 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089335301.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:11 Heat of formation + Delta-G solvation = -51.597904 kcal Electronic energy + Delta-G solvation = -27988.989468 eV Core-core repulsion = 24128.573290 eV Total energy + Delta-G solvation = -3860.416179 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.85958 -38.86960 -38.56960 -37.40650 -35.45547 -34.53178 -32.14143 -31.52246 -30.67611 -29.99154 -27.95441 -26.58007 -25.47174 -24.61749 -23.68116 -22.30131 -21.21085 -19.94394 -18.60166 -17.45058 -17.20567 -16.91464 -16.76670 -16.27784 -15.57207 -15.05711 -15.03170 -14.72351 -14.66280 -14.27697 -14.09251 -14.01890 -13.75972 -13.26008 -13.14966 -12.79932 -12.57692 -12.36424 -12.12807 -11.82555 -11.75149 -11.22756 -11.21633 -11.06154 -11.02429 -10.91303 -10.67135 -10.53456 -10.41948 -10.32539 -9.49673 -9.19162 -8.98728 -8.71331 -8.52265 -8.21039 -8.06132 -6.43723 -4.01324 1.46812 1.61154 2.66943 2.92732 3.11501 3.14622 3.17772 3.60993 3.73202 3.97722 4.07271 4.41745 4.66422 4.88381 5.02303 5.07020 5.09887 5.14412 5.19245 5.24009 5.34350 5.37644 5.48840 5.62896 5.71745 5.73379 5.80609 5.89864 6.13247 6.17568 6.26758 6.28803 6.49313 6.65758 6.69182 6.81135 6.88724 6.89165 7.20445 7.21691 7.37770 7.58315 7.84730 8.20820 8.27345 8.97049 9.19626 9.70849 10.49236 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012421 B = 0.005193 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.647059 B = 5390.340801 C = 6692.341666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.430 5.430 3 C -0.303 4.303 4 H 0.105 0.895 5 C 0.032 3.968 6 N -0.881 5.881 7 Si 0.933 3.067 8 H -0.272 1.272 9 H -0.282 1.282 10 H -0.272 1.272 11 C 0.421 3.579 12 O -0.582 6.582 13 C 0.099 3.901 14 H 0.096 0.904 15 C 0.056 3.944 16 O -0.369 6.369 17 C 0.049 3.951 18 C 0.489 3.511 19 O -0.550 6.550 20 N -0.565 5.565 21 C 0.141 3.859 22 C -0.100 4.100 23 C -0.099 4.099 24 C -0.130 4.130 25 C -0.122 4.122 26 C -0.124 4.124 27 C -0.100 4.100 28 H 0.071 0.929 29 H 0.025 0.975 30 H 0.079 0.921 31 H 0.270 0.730 32 H 0.071 0.929 33 H 0.120 0.880 34 H 0.128 0.872 35 H 0.089 0.911 36 H 0.110 0.890 37 H 0.090 0.910 38 H 0.126 0.874 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.246 -9.163 -3.654 10.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.148 5.148 3 C -0.431 4.431 4 H 0.123 0.877 5 C -0.171 4.171 6 N -0.521 5.521 7 Si 0.759 3.241 8 H -0.197 1.197 9 H -0.208 1.208 10 H -0.197 1.197 11 C 0.207 3.793 12 O -0.468 6.468 13 C -0.009 4.009 14 H 0.113 0.887 15 C -0.021 4.021 16 O -0.287 6.287 17 C -0.031 4.031 18 C 0.277 3.723 19 O -0.429 6.429 20 N -0.296 5.296 21 C 0.019 3.981 22 C -0.101 4.101 23 C -0.118 4.118 24 C -0.148 4.148 25 C -0.140 4.140 26 C -0.142 4.142 27 C -0.119 4.119 28 H 0.090 0.910 29 H 0.043 0.957 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.138 0.862 34 H 0.145 0.855 35 H 0.107 0.893 36 H 0.128 0.872 37 H 0.109 0.891 38 H 0.144 0.856 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.139 0.861 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.673 -9.419 -3.837 10.516 hybrid contribution 0.320 1.087 -0.005 1.133 sum -2.354 -8.332 -3.842 9.472 Atomic orbital electron populations 1.22007 0.80086 0.96571 1.05193 1.43760 1.06141 1.04662 1.60217 1.19761 0.94064 0.81941 1.47289 0.87692 1.25357 0.95799 0.99893 0.96047 1.70125 1.06061 1.27850 1.48034 0.85888 0.78913 0.80017 0.79300 1.19741 1.20772 1.19716 1.19537 0.88152 0.84017 0.87579 1.90543 1.13667 1.86271 1.56354 1.21691 0.93960 0.89560 0.95692 0.88682 1.22972 1.01584 0.83258 0.94306 1.88171 1.33450 1.16825 1.90236 1.22822 0.91224 0.94360 0.94674 1.20917 0.82795 0.82129 0.86470 1.90671 1.41772 1.54102 1.56392 1.47183 1.43533 1.08296 1.30616 1.20666 0.92416 1.04031 0.80975 1.20333 0.99005 0.93833 0.96957 1.21243 0.98424 0.97322 0.94803 1.21111 0.98287 0.98548 0.96814 1.21116 0.99752 0.93325 0.99855 1.21131 0.99594 0.97594 0.95841 1.21244 0.95967 0.98738 0.95946 0.91043 0.95672 0.90303 0.91970 0.91102 0.86186 0.85459 0.89343 0.87165 0.89146 0.85562 0.86481 0.86503 0.86142 0.85692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.11 8.65 59.85 0.52 2.63 16 2 N -0.43 -9.86 3.03 -122.19 -0.37 -10.23 16 3 C -0.30 -7.69 9.53 -14.93 -0.14 -7.83 16 4 H 0.11 2.81 7.23 -52.49 -0.38 2.44 16 5 C 0.03 0.78 5.46 -17.47 -0.10 0.68 16 6 N -0.88 -21.16 9.47 55.50 0.53 -20.63 16 7 Si 0.93 19.46 29.56 -169.99 -5.02 14.43 16 8 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 9 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 10 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 11 C 0.42 9.15 5.75 -10.99 -0.06 9.08 16 12 O -0.58 -14.57 14.40 5.54 0.08 -14.49 16 13 C 0.10 1.75 2.54 -69.30 -0.18 1.57 16 14 H 0.10 1.64 6.27 -51.93 -0.33 1.32 16 15 C 0.06 0.86 6.08 37.17 0.23 1.09 16 16 O -0.37 -5.31 10.86 -35.23 -0.38 -5.70 16 17 C 0.05 0.65 6.98 35.83 0.25 0.90 16 18 C 0.49 8.32 7.59 -11.56 -0.09 8.23 16 19 O -0.55 -10.34 15.39 5.55 0.09 -10.25 16 20 N -0.57 -10.12 2.54 -169.50 -0.43 -10.55 16 21 C 0.14 2.58 4.91 -5.20 -0.03 2.55 16 22 C -0.10 -1.68 5.46 -104.63 -0.57 -2.25 16 23 C -0.10 -1.55 9.63 -39.58 -0.38 -1.93 16 24 C -0.13 -1.75 10.05 -39.58 -0.40 -2.14 16 25 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 26 C -0.12 -1.74 10.05 -39.58 -0.40 -2.14 16 27 C -0.10 -1.63 9.68 -39.58 -0.38 -2.02 16 28 H 0.07 1.54 7.21 -51.93 -0.37 1.17 16 29 H 0.02 0.42 4.90 -51.93 -0.25 0.17 16 30 H 0.08 1.69 6.90 -51.93 -0.36 1.33 16 31 H 0.27 6.21 8.31 -40.82 -0.34 5.87 16 32 H 0.07 1.11 8.06 -51.93 -0.42 0.69 16 33 H 0.12 1.67 7.66 -51.93 -0.40 1.27 16 34 H 0.13 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.09 1.03 8.14 -51.92 -0.42 0.61 16 36 H 0.11 2.27 5.36 -51.93 -0.28 1.99 16 37 H 0.09 1.68 7.18 -51.93 -0.37 1.31 16 38 H 0.13 2.01 7.17 -52.48 -0.38 1.64 16 39 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 40 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 41 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 42 H 0.13 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 343.74 15.07 5.18 5.18 Total: -1.00 -28.87 343.74 -7.67 -36.54 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -5.21 Total: 9.23 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: -2.13 Total: 6.46 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: -0.27 Total: -41.41 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -0.22 Total: -30.43 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.43 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.87 -7.67 -36.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089335301.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.062 kcal (2) G-P(sol) polarization free energy of solvation -28.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds