Wall clock time and date at job start Fri Apr 10 2020 18:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37098 * 120.00081 * 2 1 4 4 H 1.08000 * 119.99677 * 188.59553 * 3 2 1 5 5 C 1.38950 * 119.99969 * 8.31799 * 3 2 1 6 6 N 1.31405 * 120.00014 * 354.69484 * 5 3 2 7 7 Si 1.86805 * 119.99993 * 174.69086 * 5 3 2 8 8 H 1.48495 * 109.46831 * 60.00141 * 7 5 3 9 9 H 1.48494 * 109.47155 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46834 * 300.00160 * 7 5 3 11 11 C 1.34781 * 120.00063 * 180.02562 * 2 1 3 12 12 O 1.21296 * 120.00074 * 185.22474 * 11 2 1 13 13 C 1.50696 * 119.99793 * 5.21551 * 11 2 1 14 14 H 1.09000 * 109.39695 * 30.97943 * 13 11 2 15 15 C 1.53018 * 109.39961 * 271.16665 * 13 11 2 16 16 O 1.43198 * 108.70481 * 190.62332 * 15 13 11 17 17 C 1.42964 * 112.89466 * 68.49228 * 16 15 13 18 18 C 1.50346 * 109.80751 * 310.35980 * 17 16 15 19 19 O 1.21284 * 118.83169 * 195.89431 * 18 17 16 20 20 N 1.33875 * 122.33633 * 15.91722 * 18 17 16 21 21 C 1.46495 * 118.72845 * 178.09714 * 20 18 17 22 22 C 1.50700 * 109.47236 * 92.39865 * 21 20 18 23 23 C 1.38230 * 119.99735 * 274.07271 * 22 21 20 24 24 C 1.38241 * 119.99740 * 179.80937 * 23 22 21 25 25 C 1.38238 * 119.99715 * 0.39956 * 24 23 22 26 26 C 1.38230 * 120.00312 * 359.85562 * 25 24 23 27 27 C 1.38237 * 119.99640 * 94.34421 * 22 21 20 28 28 H 1.09000 * 109.46837 * 56.65392 * 1 2 3 29 29 H 1.08999 * 109.46940 * 176.65654 * 1 2 3 30 30 H 1.09001 * 109.46816 * 296.65688 * 1 2 3 31 31 H 0.97000 * 120.00156 * 179.97438 * 6 5 3 32 32 H 1.09000 * 109.60428 * 310.45475 * 15 13 11 33 33 H 1.08996 * 109.60524 * 70.94246 * 15 13 11 34 34 H 1.08991 * 109.41895 * 190.25133 * 17 16 15 35 35 H 1.09009 * 109.35518 * 70.42070 * 17 16 15 36 36 H 1.09002 * 109.46659 * 212.40034 * 21 20 18 37 37 H 1.08993 * 109.47230 * 332.39432 * 21 20 18 38 38 H 1.08004 * 120.00326 * 359.97438 * 23 22 21 39 39 H 1.07997 * 119.99734 * 180.22955 * 24 23 22 40 40 H 1.08003 * 119.99628 * 179.83619 * 25 24 23 41 41 H 1.07997 * 120.00382 * 179.97438 * 26 25 24 42 42 H 1.07996 * 120.00464 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.2214 1.1925 -0.1398 5 6 1.4667 2.3843 0.1741 6 7 0.1540 2.3884 0.2343 7 14 2.4135 3.9878 0.3227 8 1 3.2124 4.2069 -0.9097 9 1 1.4592 5.1114 0.5009 10 1 3.3217 3.9194 1.4957 11 6 2.1389 -1.1672 -0.0005 12 8 3.3481 -1.1695 0.0951 13 6 1.3901 -2.4695 -0.1197 14 1 0.4901 -2.3164 -0.7153 15 6 0.9985 -2.9602 1.2757 16 8 0.5145 -4.3039 1.1710 17 6 1.5389 -5.2386 0.8238 18 6 2.3067 -4.7343 -0.3664 19 8 3.0105 -5.5088 -0.9795 20 7 2.2415 -3.4606 -0.7733 21 6 3.0556 -3.0444 -1.9179 22 6 2.2498 -3.1816 -3.1840 23 6 2.2063 -4.3933 -3.8477 24 6 1.4639 -4.5202 -5.0069 25 6 0.7717 -3.4330 -5.5068 26 6 0.8195 -2.2198 -4.8459 27 6 1.5587 -2.0940 -3.6845 28 1 -0.3633 0.5649 -0.8585 29 1 -0.3633 -1.0259 -0.0599 30 1 -0.3633 0.4611 0.9185 31 1 -0.3233 3.2240 0.3561 32 1 1.8697 -2.9345 1.9303 33 1 0.2143 -2.3211 1.6815 34 1 1.0856 -6.1998 0.5818 35 1 2.2180 -5.3605 1.6678 36 1 3.3576 -2.0049 -1.7901 37 1 3.9423 -3.6751 -1.9815 38 1 2.7502 -5.2417 -3.4592 39 1 1.4270 -5.4679 -5.5234 40 1 0.1939 -3.5314 -6.4139 41 1 0.2790 -1.3704 -5.2366 42 1 1.5958 -1.1463 -3.1681 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089335301.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:10 Heat of formation + Delta-G solvation = -68.862862 kcal Electronic energy + Delta-G solvation = -27989.738133 eV Core-core repulsion = 24128.573290 eV Total energy + Delta-G solvation = -3861.164843 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.25415 -40.26086 -40.01417 -38.69404 -37.08127 -36.15789 -33.84852 -32.92218 -31.83022 -31.35336 -29.19853 -28.29161 -26.96934 -26.10975 -25.16315 -23.46665 -22.40620 -21.57553 -19.95768 -19.03398 -18.76897 -18.47370 -18.11316 -17.57218 -16.96929 -16.52114 -16.24043 -16.14484 -15.91029 -15.85686 -15.74468 -15.45305 -15.16360 -14.59176 -14.35885 -14.23258 -14.13468 -13.72030 -13.57319 -13.45880 -13.04310 -12.83022 -12.73557 -12.61484 -12.50415 -12.29256 -12.15798 -12.09577 -11.89291 -11.65592 -11.03385 -10.95083 -10.47942 -9.92794 -9.87513 -9.77514 -9.71664 -8.28334 -5.94498 0.29810 0.45007 1.31062 1.35136 1.42446 1.50955 1.60912 2.01176 2.20348 2.54374 2.86723 3.00522 3.07637 3.18617 3.67355 3.75324 3.80158 3.88959 3.90728 4.11345 4.13138 4.23139 4.26400 4.36985 4.45377 4.54622 4.56090 4.66884 4.70020 4.74397 5.03755 5.05210 5.13719 5.18159 5.42195 5.50109 5.53140 5.56229 5.59921 5.67518 5.96573 6.06741 6.25387 6.41216 6.86522 7.10874 7.38753 7.90784 8.61599 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012421 B = 0.005193 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.647059 B = 5390.340801 C = 6692.341666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.117 3.883 2 N -0.442 5.442 3 C -0.337 4.337 4 H 0.077 0.923 5 C 0.005 3.995 6 N -0.887 5.887 7 Si 0.987 3.013 8 H -0.274 1.274 9 H -0.268 1.268 10 H -0.276 1.276 11 C 0.424 3.576 12 O -0.621 6.621 13 C 0.109 3.891 14 H 0.103 0.897 15 C 0.062 3.938 16 O -0.361 6.361 17 C 0.052 3.948 18 C 0.481 3.519 19 O -0.572 6.572 20 N -0.573 5.573 21 C 0.148 3.852 22 C -0.114 4.114 23 C -0.110 4.110 24 C -0.123 4.123 25 C -0.113 4.113 26 C -0.124 4.124 27 C -0.119 4.119 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.274 0.726 32 H 0.067 0.933 33 H 0.139 0.861 34 H 0.158 0.842 35 H 0.112 0.888 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.118 0.882 39 H 0.148 0.852 40 H 0.155 0.845 41 H 0.140 0.860 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.231 -10.367 -4.265 12.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.160 5.160 3 C -0.465 4.465 4 H 0.095 0.905 5 C -0.197 4.197 6 N -0.526 5.526 7 Si 0.811 3.189 8 H -0.199 1.199 9 H -0.193 1.193 10 H -0.201 1.201 11 C 0.212 3.788 12 O -0.509 6.509 13 C 0.001 3.999 14 H 0.121 0.879 15 C -0.015 4.015 16 O -0.279 6.279 17 C -0.027 4.027 18 C 0.271 3.729 19 O -0.452 6.452 20 N -0.303 5.303 21 C 0.026 3.974 22 C -0.115 4.115 23 C -0.129 4.129 24 C -0.141 4.141 25 C -0.131 4.131 26 C -0.141 4.141 27 C -0.137 4.137 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.157 0.843 34 H 0.175 0.825 35 H 0.129 0.871 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.136 0.864 39 H 0.166 0.834 40 H 0.172 0.828 41 H 0.158 0.842 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.697 -10.630 -4.441 12.441 hybrid contribution 0.974 1.402 0.116 1.711 sum -3.722 -9.228 -4.325 10.850 Atomic orbital electron populations 1.21877 0.78478 0.98439 1.03783 1.43906 1.07153 1.04411 1.60490 1.19641 0.93351 0.83734 1.49785 0.90490 1.25954 0.96683 1.01846 0.95234 1.70204 1.06462 1.28644 1.47271 0.85088 0.77950 0.77127 0.78762 1.19939 1.19270 1.20146 1.20194 0.87850 0.85081 0.85691 1.90514 1.15698 1.87144 1.57580 1.21628 0.93218 0.87451 0.97565 0.87949 1.22940 1.02141 0.84248 0.92220 1.88192 1.33561 1.16180 1.89945 1.23053 0.91341 0.94797 0.93508 1.21699 0.82727 0.81386 0.87128 1.90657 1.42853 1.54438 1.57296 1.47319 1.43546 1.08890 1.30587 1.20396 0.92793 1.01619 0.82617 1.20179 0.99797 0.94848 0.96655 1.21232 0.99356 0.96393 0.95914 1.21465 0.96815 1.00128 0.95666 1.21519 0.98939 0.92145 1.00482 1.21392 0.98837 0.99094 0.94821 1.21126 0.97634 0.97644 0.97342 0.92669 0.92102 0.91386 0.91536 0.91479 0.84349 0.82471 0.87075 0.90381 0.90384 0.86403 0.83434 0.82779 0.84245 0.88119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.73 8.65 127.77 1.10 5.83 16 2 N -0.44 -20.92 3.03 -658.89 -1.99 -22.91 16 3 C -0.34 -17.83 9.53 84.04 0.80 -17.03 16 4 H 0.08 4.41 7.23 -2.91 -0.02 4.39 16 5 C 0.01 0.26 5.46 84.93 0.46 0.72 16 6 N -0.89 -42.63 9.47 21.66 0.21 -42.42 16 7 Si 0.99 40.26 29.56 68.60 2.03 42.29 16 8 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 9 H -0.27 -10.27 7.11 99.48 0.71 -9.57 16 10 H -0.28 -11.39 7.11 99.48 0.71 -10.69 16 11 C 0.42 19.12 5.75 87.66 0.50 19.62 16 12 O -0.62 -32.85 14.40 -3.08 -0.04 -32.90 16 13 C 0.11 3.86 2.54 44.33 0.11 3.98 16 14 H 0.10 3.47 6.27 -2.39 -0.01 3.46 16 15 C 0.06 1.81 6.08 71.99 0.44 2.25 16 16 O -0.36 -9.38 10.86 -148.98 -1.62 -11.00 16 17 C 0.05 1.25 6.98 71.12 0.50 1.74 16 18 C 0.48 16.04 7.59 87.69 0.67 16.70 16 19 O -0.57 -21.40 15.39 -3.04 -0.05 -21.44 16 20 N -0.57 -20.79 2.54 -809.08 -2.05 -22.84 16 21 C 0.15 5.74 4.91 85.63 0.42 6.17 16 22 C -0.11 -3.91 5.46 -19.87 -0.11 -4.02 16 23 C -0.11 -3.38 9.63 22.27 0.21 -3.17 16 24 C -0.12 -2.98 10.05 22.27 0.22 -2.76 16 25 C -0.11 -2.55 10.05 22.27 0.22 -2.32 16 26 C -0.12 -3.30 10.05 22.27 0.22 -3.07 16 27 C -0.12 -3.95 9.68 22.27 0.22 -3.74 16 28 H 0.05 2.40 7.21 -2.39 -0.02 2.38 16 29 H 0.06 1.98 4.90 -2.39 -0.01 1.97 16 30 H 0.07 2.90 6.90 -2.39 -0.02 2.88 16 31 H 0.27 12.46 8.31 -92.71 -0.77 11.69 16 32 H 0.07 2.03 8.06 -2.39 -0.02 2.01 16 33 H 0.14 3.52 7.66 -2.39 -0.02 3.50 16 34 H 0.16 2.91 8.14 -2.39 -0.02 2.89 16 35 H 0.11 2.26 8.14 -2.38 -0.02 2.24 16 36 H 0.08 3.50 5.36 -2.39 -0.01 3.49 16 37 H 0.08 3.12 7.18 -2.39 -0.02 3.10 16 38 H 0.12 3.77 7.17 -2.91 -0.02 3.75 16 39 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 40 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 41 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 42 H 0.10 3.77 8.06 -2.91 -0.02 3.75 16 Total: -1.00 -65.00 343.74 3.52 -61.48 By element: Atomic # 1 Polarization: 27.80 SS G_CDS: 1.05 Total: 28.84 kcal Atomic # 6 Polarization: 14.90 SS G_CDS: 6.00 Total: 20.90 kcal Atomic # 7 Polarization: -84.33 SS G_CDS: -3.84 Total: -88.17 kcal Atomic # 8 Polarization: -63.63 SS G_CDS: -1.71 Total: -65.34 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 2.03 Total: 42.29 kcal Total: -65.00 3.52 -61.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089335301.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.388 kcal (2) G-P(sol) polarization free energy of solvation -65.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds