Wall clock time and date at job start Fri Apr 10 2020 18:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47296 * 2 1 4 4 C 1.50701 * 109.47499 * 119.99619 * 2 1 3 5 5 O 1.21286 * 119.99731 * 107.18647 * 4 2 1 6 6 N 1.34776 * 120.00173 * 287.19252 * 4 2 1 7 7 C 1.46497 * 119.99655 * 359.97438 * 6 4 2 8 8 C 1.46499 * 120.00136 * 179.97438 * 6 4 2 9 9 H 1.09004 * 110.01242 * 358.61848 * 8 6 4 10 10 C 1.53873 * 110.03043 * 237.18822 * 8 6 4 11 11 C 1.54163 * 108.70658 * 193.52853 * 10 8 6 12 12 S 1.82919 * 105.08580 * 27.90488 * 11 10 8 13 13 O 1.42094 * 109.35395 * 244.47608 * 12 11 10 14 14 O 1.42109 * 109.47022 * 111.31064 * 12 11 10 15 15 C 1.55047 * 110.02981 * 119.99500 * 8 6 4 16 16 N 1.46901 * 109.47336 * 239.99763 * 2 1 3 17 17 C 1.46903 * 110.99766 * 76.46062 * 16 2 1 18 18 C 1.46899 * 110.99923 * 312.50918 * 16 2 1 19 19 C 1.50699 * 109.47355 * 189.99498 * 18 16 2 20 20 H 1.08002 * 119.99612 * 0.02562 * 19 18 16 21 21 C 1.37875 * 120.00252 * 179.97438 * 19 18 16 22 22 N 1.31517 * 119.99799 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00032 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47074 * 90.00047 * 23 21 19 25 25 H 1.48495 * 109.47048 * 329.99815 * 23 21 19 26 26 H 1.48505 * 109.46799 * 209.99679 * 23 21 19 27 27 H 1.09002 * 109.47181 * 300.00103 * 1 2 3 28 28 H 1.08996 * 109.47395 * 60.00428 * 1 2 3 29 29 H 1.09005 * 109.47042 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47047 * 90.01015 * 7 6 4 31 31 H 1.09001 * 109.46605 * 210.00131 * 7 6 4 32 32 H 1.09004 * 109.47475 * 329.99901 * 7 6 4 33 33 H 1.09001 * 109.64494 * 313.38195 * 10 8 6 34 34 H 1.09000 * 109.64460 * 73.67276 * 10 8 6 35 35 H 1.09005 * 110.31505 * 269.00392 * 11 10 8 36 36 H 1.08993 * 110.31966 * 146.81005 * 11 10 8 37 37 H 1.09007 * 110.79318 * 279.99875 * 15 8 6 38 38 H 1.09005 * 110.78992 * 43.45554 * 15 8 6 39 39 H 1.09000 * 109.47036 * 290.10494 * 17 16 2 40 40 H 1.09000 * 109.47089 * 50.10284 * 17 16 2 41 41 H 1.09004 * 109.47052 * 170.10418 * 17 16 2 42 42 H 1.09010 * 109.47033 * 69.99513 * 18 16 2 43 43 H 1.08996 * 109.47156 * 309.99683 * 18 16 2 44 44 H 0.96995 * 120.00478 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.5271 -1.8135 1.1343 6 7 1.9318 -0.1198 2.4378 7 6 1.3345 1.2129 2.5538 8 6 2.4197 -0.8105 3.6340 9 1 2.8068 -1.7935 3.3654 10 6 1.2825 -0.9535 4.6608 11 6 1.8897 -1.3636 6.0171 12 16 3.5867 -0.6810 6.0050 13 8 4.5239 -1.7486 6.0359 14 8 3.6808 0.3712 6.9555 15 6 3.5303 0.0292 4.3163 16 7 2.0197 -0.6925 -1.1994 17 6 1.8924 0.1605 -2.3886 18 6 1.3215 -1.9707 -1.3912 19 6 2.0090 -2.7611 -2.4746 20 1 2.8780 -2.3547 -2.9707 21 6 1.5293 -4.0034 -2.8317 22 7 0.4720 -4.4988 -2.2265 23 14 2.3820 -4.9833 -4.1741 24 1 3.4350 -5.8383 -3.5698 25 1 3.0010 -4.0511 -5.1502 26 1 1.3876 -5.8397 -4.8693 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.2607 1.1170 2.7142 31 1 1.7821 1.7394 3.3968 32 1 1.5165 1.7737 1.6370 33 1 0.7614 -0.0019 4.7653 34 1 0.5813 -1.7183 4.3268 35 1 1.9192 -2.4497 6.1057 36 1 1.3139 -0.9318 6.8356 37 1 4.4850 -0.1058 3.8077 38 1 3.2536 1.0830 4.3488 39 1 0.8385 0.2765 -2.6414 40 1 2.3263 1.1388 -2.1821 41 1 2.4180 -0.3010 -3.2247 42 1 0.2879 -1.7803 -1.6806 43 1 1.3396 -2.5378 -0.4606 44 1 0.0294 -3.9902 -1.5292 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096969435.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:26 Heat of formation + Delta-G solvation = -81.462406 kcal Electronic energy + Delta-G solvation = -26087.781306 eV Core-core repulsion = 22361.514057 eV Total energy + Delta-G solvation = -3726.267249 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.31640 -37.72028 -37.33231 -36.35083 -36.17166 -34.18438 -32.78230 -30.63930 -29.59479 -27.24687 -26.89191 -25.76216 -24.95177 -23.52400 -21.94075 -20.38366 -19.18735 -18.90261 -17.54516 -17.19636 -16.80789 -16.33390 -16.05947 -15.69215 -15.35655 -14.83877 -14.62307 -14.32483 -14.08302 -13.82794 -13.63008 -13.20660 -13.16619 -12.92784 -12.71390 -12.57657 -12.44790 -12.37120 -12.25547 -12.21354 -11.92134 -11.60558 -11.42100 -11.36315 -11.12417 -11.03949 -10.94446 -10.75718 -10.48737 -10.37690 -10.04140 -9.29972 -8.81159 -8.56175 -8.24713 -7.35405 -6.28084 -3.94107 -0.32347 2.12865 2.78351 2.86623 3.26206 3.49353 3.53586 3.65123 3.68286 4.01519 4.16197 4.27403 4.40093 4.53822 4.56743 4.69031 4.80841 4.85678 5.06035 5.12462 5.14745 5.25406 5.29628 5.32022 5.48313 5.49462 5.56228 5.59506 5.75462 5.81921 5.92976 6.17787 6.30714 6.32325 6.60145 7.05205 7.13341 7.28349 7.80863 8.01320 8.34626 8.46406 8.65557 8.96653 9.74897 11.11620 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018920 B = 0.003370 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.521564 B = 8307.070511 C = 9049.704332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.066 3.934 3 H 0.092 0.908 4 C 0.520 3.480 5 O -0.490 6.490 6 N -0.613 5.613 7 C 0.072 3.928 8 C 0.144 3.856 9 H 0.126 0.874 10 C -0.126 4.126 11 C -0.588 4.588 12 S 2.393 3.607 13 O -0.930 6.930 14 O -0.939 6.939 15 C -0.606 4.606 16 N -0.516 5.516 17 C 0.041 3.959 18 C 0.179 3.821 19 C -0.581 4.581 20 H 0.054 0.946 21 C 0.013 3.987 22 N -0.917 5.917 23 Si 1.074 2.926 24 H -0.288 1.288 25 H -0.289 1.289 26 H -0.286 1.286 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.016 0.984 40 H 0.044 0.956 41 H 0.077 0.923 42 H -0.021 1.021 43 H 0.042 0.958 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.946 14.550 15.390 21.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.046 4.046 3 H 0.109 0.891 4 C 0.307 3.693 5 O -0.361 6.361 6 N -0.350 5.350 7 C -0.071 4.071 8 C 0.038 3.962 9 H 0.144 0.856 10 C -0.166 4.166 11 C -0.718 4.718 12 S 2.575 3.425 13 O -0.927 6.927 14 O -0.936 6.936 15 C -0.736 4.736 16 N -0.240 5.240 17 C -0.107 4.107 18 C 0.054 3.946 19 C -0.620 4.620 20 H 0.073 0.927 21 C -0.190 4.190 22 N -0.554 5.554 23 Si 0.903 3.097 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.212 1.212 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.118 0.882 35 H 0.159 0.841 36 H 0.159 0.841 37 H 0.162 0.838 38 H 0.159 0.841 39 H 0.035 0.965 40 H 0.063 0.937 41 H 0.096 0.904 42 H -0.003 1.003 43 H 0.059 0.941 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.513 12.375 15.194 19.603 hybrid contribution -1.494 1.824 0.237 2.370 sum -0.981 14.200 15.431 20.993 Atomic orbital electron populations 1.22421 0.95738 1.03743 1.02070 1.21607 0.93976 0.97662 0.91405 0.89057 1.20917 0.78321 0.86449 0.83624 1.90777 1.41328 1.19227 1.84741 1.47744 1.62954 1.18484 1.05793 1.21898 0.98191 0.83713 1.03342 1.21560 0.90870 0.97747 0.86004 0.85630 1.22264 0.99278 1.04612 0.90412 1.30448 1.22601 1.13560 1.05224 1.08931 0.78740 0.76639 0.78157 1.93653 1.58483 1.54417 1.86181 1.93617 1.86222 1.55898 1.57867 1.31108 1.08548 1.11394 1.22553 1.62041 1.57017 1.04932 1.00008 1.22227 0.98967 0.95310 0.94212 1.20026 0.90924 0.85194 0.98418 1.21966 1.15195 1.04311 1.20517 0.92747 1.25786 0.96410 0.95806 1.00989 1.70757 1.19628 1.40469 1.24578 0.83470 0.75421 0.75545 0.75273 1.21465 1.21566 1.21203 0.92354 0.91600 0.91089 0.92210 0.91116 0.90316 0.89337 0.88224 0.84051 0.84116 0.83768 0.84128 0.96505 0.93688 0.90445 1.00317 0.94057 0.92503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.65 8.20 37.15 0.30 -2.35 16 2 C 0.07 1.09 1.90 -68.87 -0.13 0.96 16 3 H 0.09 1.21 6.35 -51.93 -0.33 0.88 16 4 C 0.52 8.89 6.80 -10.99 -0.07 8.81 16 5 O -0.49 -11.03 13.77 5.55 0.08 -10.96 16 6 N -0.61 -7.16 2.82 -172.18 -0.49 -7.65 16 7 C 0.07 0.53 7.97 59.85 0.48 1.01 16 8 C 0.14 1.47 2.97 -66.39 -0.20 1.27 16 9 H 0.13 1.59 6.94 -51.93 -0.36 1.23 16 10 C -0.13 -0.90 5.86 -25.67 -0.15 -1.05 16 11 C -0.59 -3.46 7.26 37.77 0.27 -3.18 16 12 S 2.39 20.03 6.10 -107.50 -0.66 19.37 16 13 O -0.93 -11.78 18.14 -57.73 -1.05 -12.83 16 14 O -0.94 -10.40 18.15 -57.73 -1.05 -11.45 16 15 C -0.61 -4.74 6.78 38.24 0.26 -4.48 16 16 N -0.52 -11.14 4.43 -237.73 -1.05 -12.20 16 17 C 0.04 0.77 9.03 60.07 0.54 1.31 16 18 C 0.18 4.70 2.52 -4.98 -0.01 4.69 16 19 C -0.58 -17.03 8.59 -34.44 -0.30 -17.32 16 20 H 0.05 1.60 7.10 -52.49 -0.37 1.23 16 21 C 0.01 0.38 5.46 -17.82 -0.10 0.29 16 22 N -0.92 -28.67 13.65 55.43 0.76 -27.91 16 23 Si 1.07 26.24 29.90 -169.99 -5.08 21.16 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 H 0.06 0.63 6.06 -51.93 -0.31 0.32 16 28 H 0.07 0.94 7.18 -51.93 -0.37 0.57 16 29 H 0.07 1.27 6.54 -51.93 -0.34 0.93 16 30 H 0.06 0.37 7.28 -51.93 -0.38 -0.01 16 31 H 0.07 0.34 6.33 -51.93 -0.33 0.01 16 32 H 0.08 0.55 6.10 -51.93 -0.32 0.23 16 33 H 0.09 0.44 7.26 -51.93 -0.38 0.07 16 34 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.14 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.14 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.14 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.14 0.77 6.38 -51.93 -0.33 0.44 16 39 H 0.02 0.30 7.22 -51.93 -0.37 -0.07 16 40 H 0.04 0.68 7.86 -51.93 -0.41 0.27 16 41 H 0.08 1.59 7.04 -51.93 -0.37 1.22 16 42 H -0.02 -0.56 6.66 -51.92 -0.35 -0.90 16 43 H 0.04 1.20 5.85 -51.93 -0.30 0.89 16 44 H 0.26 8.27 7.22 -40.82 -0.29 7.97 16 LS Contribution 349.58 15.07 5.27 5.27 Total: -1.00 -40.84 349.58 -8.77 -49.62 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -6.40 Total: -2.39 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: 0.90 Total: -10.04 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: -0.78 Total: -47.76 kcal Atomic # 8 Polarization: -33.21 SS G_CDS: -2.02 Total: -35.23 kcal Atomic # 14 Polarization: 26.24 SS G_CDS: -5.08 Total: 21.16 kcal Atomic # 16 Polarization: 20.03 SS G_CDS: -0.66 Total: 19.37 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -40.84 -8.77 -49.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096969435.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.847 kcal (2) G-P(sol) polarization free energy of solvation -40.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds