Wall clock time and date at job start Fri Apr 10 2020 18:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47531 * 2 1 4 4 C 1.50705 * 109.47285 * 240.00107 * 2 1 3 5 5 O 1.21281 * 119.99720 * 252.27688 * 4 2 1 6 6 N 1.34773 * 120.00024 * 72.28096 * 4 2 1 7 7 C 1.46508 * 119.99883 * 359.97438 * 6 4 2 8 8 C 1.46499 * 120.00226 * 180.02562 * 6 4 2 9 9 H 1.09003 * 109.53144 * 359.63458 * 8 6 4 10 10 C 1.53876 * 109.64818 * 239.27263 * 8 6 4 11 11 C 1.55405 * 106.74127 * 193.05363 * 10 8 6 12 12 S 1.83289 * 102.42110 * 42.25293 * 11 10 8 13 13 O 1.42103 * 109.35129 * 223.49943 * 12 11 10 14 14 O 1.42103 * 109.35235 * 90.43682 * 12 11 10 15 15 C 1.54167 * 109.64768 * 119.99691 * 8 6 4 16 16 N 1.46901 * 109.47424 * 120.00088 * 2 1 3 17 17 C 1.46901 * 110.99725 * 287.20562 * 16 2 1 18 18 C 1.46895 * 111.00134 * 51.15678 * 16 2 1 19 19 C 1.50696 * 109.47531 * 170.00027 * 18 16 2 20 20 H 1.08006 * 119.99845 * 0.02562 * 19 18 16 21 21 C 1.37878 * 120.00481 * 179.97438 * 19 18 16 22 22 N 1.31519 * 119.99641 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00217 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47304 * 60.00564 * 23 21 19 25 25 H 1.48503 * 109.46942 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46988 * 300.00068 * 23 21 19 27 27 H 1.08992 * 109.47250 * 299.99872 * 1 2 3 28 28 H 1.08998 * 109.46952 * 60.00452 * 1 2 3 29 29 H 1.08998 * 109.46822 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46818 * 269.99793 * 7 6 4 31 31 H 1.09001 * 109.46913 * 30.00364 * 7 6 4 32 32 H 1.09000 * 109.46716 * 150.00270 * 7 6 4 33 33 H 1.09000 * 110.02650 * 312.25641 * 10 8 6 34 34 H 1.09001 * 110.02634 * 73.62461 * 10 8 6 35 35 H 1.08994 * 110.75729 * 284.08015 * 11 10 8 36 36 H 1.08999 * 110.95359 * 160.52064 * 11 10 8 37 37 H 1.09002 * 110.31716 * 28.86043 * 15 8 6 38 38 H 1.09000 * 110.40413 * 266.71019 * 15 8 6 39 39 H 1.09003 * 109.47113 * 66.93575 * 17 16 2 40 40 H 1.09001 * 109.47236 * 186.92732 * 17 16 2 41 41 H 1.08999 * 109.47347 * 306.93176 * 17 16 2 42 42 H 1.08999 * 109.47239 * 290.00513 * 18 16 2 43 43 H 1.09004 * 109.47024 * 50.00080 * 18 16 2 44 44 H 0.97000 * 119.99842 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.5360 -1.8094 -1.1330 6 7 1.9221 -0.1244 -2.4391 7 6 1.3133 1.2030 -2.5568 8 6 2.4100 -0.8152 -3.6354 9 1 2.8318 -1.7797 -3.3527 10 6 3.4889 0.0399 -4.3228 11 6 3.7153 -0.5736 -5.7326 12 16 2.0055 -0.9377 -6.2834 13 8 1.9694 -2.2229 -6.8885 14 8 1.4853 0.1870 -6.9789 15 6 1.2449 -1.0281 -4.6224 16 7 2.0197 -0.6925 1.1994 17 6 1.8127 0.1263 2.4014 18 6 1.3843 -2.0091 1.3435 19 6 2.0801 -2.7864 2.4309 20 1 2.9111 -2.3463 2.9622 21 6 1.6554 -4.0592 2.7484 22 7 0.6432 -4.5950 2.1017 23 14 2.5175 -5.0224 4.0968 24 1 2.4147 -4.2799 5.3787 25 1 1.8752 -6.3534 4.2423 26 1 3.9482 -5.2000 3.7409 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.2397 1.0977 -2.7125 31 1 1.4944 1.7681 -1.6425 32 1 1.7531 1.7306 -3.4032 33 1 3.1448 1.0698 -4.4173 34 1 4.4140 0.0070 -3.7472 35 1 4.3034 -1.4888 -5.6657 36 1 4.1915 0.1458 -6.3988 37 1 0.4999 -0.2414 -4.5038 38 1 0.7895 -2.0063 -4.4674 39 1 0.7444 0.2254 2.5939 40 1 2.2926 -0.3531 3.2546 41 1 2.2474 1.1139 2.2475 42 1 0.3342 -1.8790 1.6049 43 1 1.4597 -2.5538 0.4024 44 1 0.3446 -5.4905 2.3248 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096969436.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:29 Heat of formation + Delta-G solvation = -76.254574 kcal Electronic energy + Delta-G solvation = -26081.367462 eV Core-core repulsion = 22355.326042 eV Total energy + Delta-G solvation = -3726.041421 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.25218 -37.64299 -37.28794 -36.29955 -36.03725 -34.07178 -32.53831 -30.54907 -29.57383 -27.24646 -27.09467 -25.65036 -25.04500 -23.59143 -21.80786 -20.19256 -19.14302 -18.74879 -17.43462 -17.12039 -16.56771 -16.23945 -16.04382 -15.80411 -15.06657 -14.64233 -14.48015 -14.36726 -14.23142 -13.82554 -13.64411 -13.13923 -13.00659 -12.79399 -12.66970 -12.45727 -12.38683 -12.34814 -12.24583 -12.10034 -11.89303 -11.69370 -11.48852 -11.27738 -11.01204 -10.95479 -10.87538 -10.65631 -10.53441 -10.34754 -9.84630 -9.37559 -8.91662 -8.70375 -8.28894 -7.24618 -5.92927 -3.91921 -0.28078 2.17667 2.86624 2.95976 3.28953 3.38329 3.42329 3.45537 3.72920 4.00043 4.18907 4.33141 4.47905 4.48972 4.62055 4.74808 4.89617 4.96900 5.10405 5.18286 5.24879 5.30692 5.38277 5.42189 5.44756 5.57463 5.63991 5.65527 5.87209 5.93033 6.03334 6.28101 6.39827 6.46657 6.68481 7.28497 7.37759 7.43060 7.86160 8.22038 8.22806 8.50540 8.64494 9.13628 9.69811 11.18485 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019163 B = 0.003381 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.823769 B = 8279.605753 C = 9045.677489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.068 3.932 3 H 0.090 0.910 4 C 0.520 3.480 5 O -0.488 6.488 6 N -0.617 5.617 7 C 0.069 3.931 8 C 0.150 3.850 9 H 0.124 0.876 10 C -0.132 4.132 11 C -0.584 4.584 12 S 2.391 3.609 13 O -0.936 6.936 14 O -0.938 6.938 15 C -0.608 4.608 16 N -0.523 5.523 17 C 0.039 3.961 18 C 0.185 3.815 19 C -0.501 4.501 20 H 0.059 0.941 21 C 0.055 3.945 22 N -0.900 5.900 23 Si 0.896 3.104 24 H -0.279 1.279 25 H -0.289 1.289 26 H -0.277 1.277 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.146 0.854 39 H 0.016 0.984 40 H 0.076 0.924 41 H 0.043 0.957 42 H -0.011 1.011 43 H 0.057 0.943 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.067 14.839 -14.431 20.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.044 4.044 3 H 0.108 0.892 4 C 0.307 3.693 5 O -0.359 6.359 6 N -0.354 5.354 7 C -0.074 4.074 8 C 0.044 3.956 9 H 0.142 0.858 10 C -0.172 4.172 11 C -0.714 4.714 12 S 2.574 3.426 13 O -0.933 6.933 14 O -0.935 6.935 15 C -0.739 4.739 16 N -0.247 5.247 17 C -0.110 4.110 18 C 0.060 3.940 19 C -0.540 4.540 20 H 0.077 0.923 21 C -0.146 4.146 22 N -0.540 5.540 23 Si 0.724 3.276 24 H -0.204 1.204 25 H -0.214 1.214 26 H -0.202 1.202 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.109 0.891 34 H 0.123 0.877 35 H 0.160 0.840 36 H 0.158 0.842 37 H 0.159 0.841 38 H 0.164 0.836 39 H 0.035 0.965 40 H 0.095 0.905 41 H 0.062 0.938 42 H 0.006 0.994 43 H 0.075 0.925 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.350 13.840 -15.296 20.762 hybrid contribution -0.278 -0.279 1.585 1.633 sum 2.072 13.561 -13.712 19.396 Atomic orbital electron populations 1.22436 0.95869 1.03991 1.01927 1.21565 0.93917 0.97622 0.91333 0.89219 1.20895 0.78398 0.86335 0.83637 1.90768 1.41131 1.19250 1.84734 1.47852 1.62708 1.18944 1.05885 1.21926 0.98226 0.83889 1.03397 1.21276 0.90064 0.99178 0.85100 0.85767 1.22655 1.01453 1.00210 0.92831 1.30630 1.22737 1.11552 1.06499 1.08998 0.79960 0.75443 0.78227 1.93632 1.85726 1.40050 1.73879 1.93619 1.77405 1.52348 1.70104 1.30974 1.09719 1.12811 1.20365 1.62185 1.58263 1.04839 0.99404 1.22234 0.98538 0.95815 0.94367 1.20005 0.91564 0.83174 0.99221 1.21091 1.15660 0.99444 1.17789 0.92256 1.24941 0.95280 0.97525 0.96835 1.69950 1.26597 1.15835 1.41593 0.86598 0.79872 0.79011 0.82102 1.20429 1.21435 1.20241 0.91637 0.92516 0.90792 0.92313 0.90175 0.91012 0.89109 0.87677 0.83995 0.84188 0.84052 0.83579 0.96530 0.90518 0.93820 0.99353 0.92499 0.93074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.76 8.26 37.16 0.31 -2.45 16 2 C 0.07 1.13 1.91 -68.86 -0.13 1.00 16 3 H 0.09 1.19 6.50 -51.93 -0.34 0.85 16 4 C 0.52 8.88 6.80 -10.98 -0.07 8.81 16 5 O -0.49 -10.90 13.45 5.56 0.07 -10.83 16 6 N -0.62 -7.28 2.78 -172.70 -0.48 -7.76 16 7 C 0.07 0.54 8.02 59.85 0.48 1.02 16 8 C 0.15 1.51 2.95 -66.86 -0.20 1.32 16 9 H 0.12 1.52 6.90 -51.93 -0.36 1.16 16 10 C -0.13 -0.92 5.92 -25.00 -0.15 -1.07 16 11 C -0.58 -3.38 7.34 38.43 0.28 -3.10 16 12 S 2.39 20.05 6.09 -107.50 -0.66 19.40 16 13 O -0.94 -11.60 18.15 -57.73 -1.05 -12.65 16 14 O -0.94 -10.41 18.15 -57.73 -1.05 -11.46 16 15 C -0.61 -5.11 6.85 37.77 0.26 -4.85 16 16 N -0.52 -11.17 4.49 -237.73 -1.07 -12.23 16 17 C 0.04 0.72 9.03 60.07 0.54 1.26 16 18 C 0.18 4.88 3.34 -4.98 -0.02 4.86 16 19 C -0.50 -14.51 8.55 -34.44 -0.29 -14.80 16 20 H 0.06 1.69 7.10 -52.48 -0.37 1.32 16 21 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 22 N -0.90 -27.50 13.29 55.43 0.74 -26.76 16 23 Si 0.90 22.28 29.54 -169.99 -5.02 17.26 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 27 H 0.06 0.95 6.95 -51.93 -0.36 0.58 16 28 H 0.06 0.65 6.00 -51.93 -0.31 0.34 16 29 H 0.07 1.38 6.54 -51.93 -0.34 1.04 16 30 H 0.06 0.41 7.02 -51.93 -0.36 0.05 16 31 H 0.08 0.57 6.10 -51.93 -0.32 0.25 16 32 H 0.07 0.38 6.25 -51.93 -0.32 0.05 16 33 H 0.09 0.47 6.31 -51.93 -0.33 0.14 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.14 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.14 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.14 0.99 6.94 -51.93 -0.36 0.63 16 38 H 0.15 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.02 0.29 7.00 -51.93 -0.36 -0.07 16 40 H 0.08 1.54 6.94 -51.93 -0.36 1.18 16 41 H 0.04 0.65 7.96 -51.93 -0.41 0.24 16 42 H -0.01 -0.31 6.80 -51.93 -0.35 -0.66 16 43 H 0.06 1.67 5.64 -51.93 -0.29 1.38 16 44 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 349.52 15.07 5.27 5.27 Total: -1.00 -39.74 349.52 -8.71 -48.46 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -6.38 Total: -2.18 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: 0.91 Total: -6.51 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: -0.81 Total: -46.76 kcal Atomic # 8 Polarization: -32.92 SS G_CDS: -2.02 Total: -34.94 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Atomic # 16 Polarization: 20.05 SS G_CDS: -0.66 Total: 19.40 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -39.74 -8.71 -48.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096969436.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.798 kcal (2) G-P(sol) polarization free energy of solvation -39.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds