Wall clock time and date at job start Fri Apr 10 2020 18:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47531 * 2 1 4 4 C 1.50705 * 109.47285 * 240.00107 * 2 1 3 5 5 O 1.21281 * 119.99720 * 252.27688 * 4 2 1 6 6 N 1.34773 * 120.00024 * 72.28096 * 4 2 1 7 7 C 1.46508 * 119.99883 * 359.97438 * 6 4 2 8 8 C 1.46499 * 120.00226 * 180.02562 * 6 4 2 9 9 H 1.09003 * 109.53144 * 359.63458 * 8 6 4 10 10 C 1.53876 * 109.64818 * 239.27263 * 8 6 4 11 11 C 1.55405 * 106.74127 * 193.05363 * 10 8 6 12 12 S 1.83289 * 102.42110 * 42.25293 * 11 10 8 13 13 O 1.42103 * 109.35129 * 223.49943 * 12 11 10 14 14 O 1.42103 * 109.35235 * 90.43682 * 12 11 10 15 15 C 1.54167 * 109.64768 * 119.99691 * 8 6 4 16 16 N 1.46901 * 109.47424 * 120.00088 * 2 1 3 17 17 C 1.46901 * 110.99725 * 287.20562 * 16 2 1 18 18 C 1.46895 * 111.00134 * 51.15678 * 16 2 1 19 19 C 1.50696 * 109.47531 * 170.00027 * 18 16 2 20 20 H 1.08006 * 119.99845 * 0.02562 * 19 18 16 21 21 C 1.37878 * 120.00481 * 179.97438 * 19 18 16 22 22 N 1.31519 * 119.99641 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00217 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47304 * 60.00564 * 23 21 19 25 25 H 1.48503 * 109.46942 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46988 * 300.00068 * 23 21 19 27 27 H 1.08992 * 109.47250 * 299.99872 * 1 2 3 28 28 H 1.08998 * 109.46952 * 60.00452 * 1 2 3 29 29 H 1.08998 * 109.46822 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46818 * 269.99793 * 7 6 4 31 31 H 1.09001 * 109.46913 * 30.00364 * 7 6 4 32 32 H 1.09000 * 109.46716 * 150.00270 * 7 6 4 33 33 H 1.09000 * 110.02650 * 312.25641 * 10 8 6 34 34 H 1.09001 * 110.02634 * 73.62461 * 10 8 6 35 35 H 1.08994 * 110.75729 * 284.08015 * 11 10 8 36 36 H 1.08999 * 110.95359 * 160.52064 * 11 10 8 37 37 H 1.09002 * 110.31716 * 28.86043 * 15 8 6 38 38 H 1.09000 * 110.40413 * 266.71019 * 15 8 6 39 39 H 1.09003 * 109.47113 * 66.93575 * 17 16 2 40 40 H 1.09001 * 109.47236 * 186.92732 * 17 16 2 41 41 H 1.08999 * 109.47347 * 306.93176 * 17 16 2 42 42 H 1.08999 * 109.47239 * 290.00513 * 18 16 2 43 43 H 1.09004 * 109.47024 * 50.00080 * 18 16 2 44 44 H 0.97000 * 119.99842 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.5360 -1.8094 -1.1330 6 7 1.9221 -0.1244 -2.4391 7 6 1.3133 1.2030 -2.5568 8 6 2.4100 -0.8152 -3.6354 9 1 2.8318 -1.7797 -3.3527 10 6 3.4889 0.0399 -4.3228 11 6 3.7153 -0.5736 -5.7326 12 16 2.0055 -0.9377 -6.2834 13 8 1.9694 -2.2229 -6.8885 14 8 1.4853 0.1870 -6.9789 15 6 1.2449 -1.0281 -4.6224 16 7 2.0197 -0.6925 1.1994 17 6 1.8127 0.1263 2.4014 18 6 1.3843 -2.0091 1.3435 19 6 2.0801 -2.7864 2.4309 20 1 2.9111 -2.3463 2.9622 21 6 1.6554 -4.0592 2.7484 22 7 0.6432 -4.5950 2.1017 23 14 2.5175 -5.0224 4.0968 24 1 2.4147 -4.2799 5.3787 25 1 1.8752 -6.3534 4.2423 26 1 3.9482 -5.2000 3.7409 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.2397 1.0977 -2.7125 31 1 1.4944 1.7681 -1.6425 32 1 1.7531 1.7306 -3.4032 33 1 3.1448 1.0698 -4.4173 34 1 4.4140 0.0070 -3.7472 35 1 4.3034 -1.4888 -5.6657 36 1 4.1915 0.1458 -6.3988 37 1 0.4999 -0.2414 -4.5038 38 1 0.7895 -2.0063 -4.4674 39 1 0.7444 0.2254 2.5939 40 1 2.2926 -0.3531 3.2546 41 1 2.2474 1.1139 2.2475 42 1 0.3342 -1.8790 1.6049 43 1 1.4597 -2.5538 0.4024 44 1 0.3446 -5.4905 2.3248 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096969436.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:29 Heat of formation + Delta-G solvation = -109.852480 kcal Electronic energy + Delta-G solvation = -26082.824377 eV Core-core repulsion = 22355.326042 eV Total energy + Delta-G solvation = -3727.498335 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.43457 -38.79813 -38.11970 -37.45534 -37.08650 -35.13036 -34.54041 -31.75418 -30.47529 -29.17291 -27.92028 -26.81526 -26.25748 -25.09417 -23.08488 -21.37979 -19.94868 -19.81724 -18.72128 -18.33042 -17.87607 -17.36337 -17.03792 -16.65211 -16.48096 -16.19019 -15.77230 -15.36962 -15.31195 -15.04890 -14.75143 -14.47841 -14.17897 -14.01740 -13.68966 -13.41030 -13.40473 -13.24443 -13.17989 -13.14212 -13.06375 -12.95196 -12.76123 -12.74467 -12.58045 -12.30384 -12.15620 -12.11907 -11.79486 -11.74661 -11.31677 -11.29377 -10.63742 -10.35021 -9.69868 -8.92610 -8.16331 -6.24021 -0.96809 1.37586 1.42471 1.47312 1.49611 1.71361 1.95364 2.41479 2.59950 3.03867 3.16543 3.26756 3.41448 3.57679 3.63956 3.70287 3.91300 4.00374 4.04873 4.14050 4.33403 4.53098 4.54948 4.62223 4.63117 4.66948 4.75179 4.77574 4.86262 4.89915 5.02393 5.06241 5.12813 5.15715 5.33097 5.43972 5.59904 5.66719 6.10694 6.29451 6.43029 6.69580 6.91570 7.32216 7.43366 8.94897 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019163 B = 0.003381 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.823769 B = 8279.605753 C = 9045.677489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.065 3.935 3 H 0.137 0.863 4 C 0.513 3.487 5 O -0.558 6.558 6 N -0.604 5.604 7 C 0.050 3.950 8 C 0.138 3.862 9 H 0.092 0.908 10 C -0.127 4.127 11 C -0.559 4.559 12 S 2.407 3.593 13 O -0.983 6.983 14 O -0.961 6.961 15 C -0.605 4.605 16 N -0.542 5.542 17 C 0.041 3.959 18 C 0.209 3.791 19 C -0.521 4.521 20 H 0.058 0.942 21 C -0.002 4.002 22 N -0.937 5.937 23 Si 0.966 3.034 24 H -0.263 1.263 25 H -0.283 1.283 26 H -0.273 1.273 27 H 0.073 0.927 28 H 0.098 0.902 29 H 0.025 0.975 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.121 0.879 34 H 0.108 0.892 35 H 0.151 0.849 36 H 0.173 0.827 37 H 0.160 0.840 38 H 0.134 0.866 39 H 0.018 0.982 40 H 0.052 0.948 41 H 0.089 0.911 42 H -0.037 1.037 43 H 0.020 0.980 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.128 18.001 -14.761 23.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.047 4.047 3 H 0.154 0.846 4 C 0.301 3.699 5 O -0.434 6.434 6 N -0.339 5.339 7 C -0.091 4.091 8 C 0.032 3.968 9 H 0.111 0.889 10 C -0.166 4.166 11 C -0.692 4.692 12 S 2.593 3.407 13 O -0.980 6.980 14 O -0.959 6.959 15 C -0.735 4.735 16 N -0.266 5.266 17 C -0.107 4.107 18 C 0.083 3.917 19 C -0.559 4.559 20 H 0.076 0.924 21 C -0.200 4.200 22 N -0.578 5.578 23 Si 0.791 3.209 24 H -0.187 1.187 25 H -0.209 1.209 26 H -0.199 1.199 27 H 0.092 0.908 28 H 0.116 0.884 29 H 0.045 0.955 30 H 0.090 0.910 31 H 0.112 0.888 32 H 0.125 0.875 33 H 0.139 0.861 34 H 0.126 0.874 35 H 0.169 0.831 36 H 0.190 0.810 37 H 0.178 0.822 38 H 0.152 0.848 39 H 0.036 0.964 40 H 0.071 0.929 41 H 0.107 0.893 42 H -0.020 1.020 43 H 0.038 0.962 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.368 17.072 -15.675 23.420 hybrid contribution -0.600 -1.148 1.616 2.071 sum 2.767 15.924 -14.059 21.422 Atomic orbital electron populations 1.22332 0.94808 1.01606 1.04389 1.21783 0.94751 0.99042 0.89165 0.84611 1.21107 0.77797 0.85612 0.85377 1.90742 1.44613 1.22115 1.85968 1.47810 1.61369 1.20043 1.04661 1.22387 0.99150 0.81789 1.05782 1.21450 0.91578 0.98713 0.85045 0.88942 1.22671 1.00280 1.00978 0.92672 1.30519 1.19652 1.12899 1.06088 1.08412 0.80965 0.73837 0.77479 1.93571 1.86895 1.42312 1.75209 1.93580 1.78805 1.52564 1.70905 1.30917 1.09758 1.12932 1.19934 1.61950 1.58538 1.03873 1.02213 1.22248 0.98811 0.97096 0.92532 1.19460 0.90098 0.85761 0.96405 1.21515 1.15695 1.00241 1.18465 0.92418 1.25896 0.95977 0.98688 0.99390 1.70100 1.28192 1.16208 1.43322 0.85488 0.78513 0.77541 0.79359 1.18734 1.20859 1.19853 0.90775 0.88367 0.95536 0.90985 0.88756 0.87510 0.86123 0.87393 0.83079 0.80969 0.82180 0.84796 0.96362 0.92876 0.89271 1.01968 0.96213 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.04 8.26 71.98 0.59 -4.45 16 2 C 0.06 2.05 1.91 44.17 0.08 2.14 16 3 H 0.14 3.03 6.50 -2.39 -0.02 3.01 16 4 C 0.51 17.61 6.80 87.66 0.60 18.21 16 5 O -0.56 -26.45 13.45 -3.03 -0.04 -26.49 16 6 N -0.60 -13.25 2.78 -818.70 -2.28 -15.53 16 7 C 0.05 0.56 8.02 127.77 1.03 1.59 16 8 C 0.14 2.67 2.95 45.68 0.13 2.80 16 9 H 0.09 2.42 6.90 -2.39 -0.02 2.40 16 10 C -0.13 -1.36 5.92 31.72 0.19 -1.17 16 11 C -0.56 -4.82 7.34 72.81 0.53 -4.29 16 12 S 2.41 37.73 6.09 -56.49 -0.34 37.39 16 13 O -0.98 -24.78 18.15 -127.47 -2.31 -27.10 16 14 O -0.96 -19.58 18.15 -127.47 -2.31 -21.90 16 15 C -0.61 -9.79 6.85 72.38 0.50 -9.29 16 16 N -0.54 -23.34 4.49 -906.04 -4.06 -27.41 16 17 C 0.04 1.47 9.03 127.69 1.15 2.62 16 18 C 0.21 11.60 3.34 85.56 0.29 11.88 16 19 C -0.52 -31.26 8.55 25.60 0.22 -31.05 16 20 H 0.06 3.39 7.10 -2.91 -0.02 3.37 16 21 C 0.00 -0.15 5.46 84.65 0.46 0.32 16 22 N -0.94 -59.64 13.29 21.45 0.28 -59.36 16 23 Si 0.97 46.64 29.54 68.60 2.03 48.66 16 24 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 25 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 26 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 27 H 0.07 2.02 6.95 -2.39 -0.02 2.01 16 28 H 0.10 1.98 6.00 -2.39 -0.01 1.96 16 29 H 0.03 1.02 6.54 -2.39 -0.02 1.00 16 30 H 0.07 0.68 7.02 -2.39 -0.02 0.67 16 31 H 0.09 0.84 6.10 -2.39 -0.01 0.83 16 32 H 0.11 0.51 6.25 -2.39 -0.01 0.50 16 33 H 0.12 0.61 6.31 -2.39 -0.02 0.60 16 34 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.15 1.17 8.14 -2.39 -0.02 1.16 16 36 H 0.17 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.16 1.91 6.94 -2.39 -0.02 1.90 16 38 H 0.13 2.52 8.14 -2.39 -0.02 2.50 16 39 H 0.02 0.63 7.00 -2.39 -0.02 0.62 16 40 H 0.05 2.13 6.94 -2.39 -0.02 2.11 16 41 H 0.09 2.36 7.96 -2.39 -0.02 2.34 16 42 H -0.04 -2.20 6.80 -2.39 -0.02 -2.21 16 43 H 0.02 1.26 5.64 -2.39 -0.01 1.24 16 44 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -93.60 349.52 -2.26 -95.86 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: 1.01 Total: 6.57 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: 5.77 Total: -10.69 kcal Atomic # 7 Polarization: -96.24 SS G_CDS: -6.06 Total: -102.30 kcal Atomic # 8 Polarization: -70.82 SS G_CDS: -4.67 Total: -75.49 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.66 kcal Atomic # 16 Polarization: 37.73 SS G_CDS: -0.34 Total: 37.39 kcal Total: -93.60 -2.26 -95.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096969436.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.995 kcal (2) G-P(sol) polarization free energy of solvation -93.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds