Wall clock time and date at job start Fri Apr 10 2020 18:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.46974 * 2 1 4 4 C 1.50693 * 109.47295 * 120.00435 * 2 1 3 5 5 O 1.21283 * 119.99817 * 119.99837 * 4 2 1 6 6 N 1.34775 * 120.00017 * 300.00181 * 4 2 1 7 7 C 1.46495 * 120.00051 * 359.97438 * 6 4 2 8 8 C 1.46505 * 120.00072 * 179.97438 * 6 4 2 9 9 H 1.09002 * 109.63835 * 0.43238 * 8 6 4 10 10 C 1.53872 * 109.64248 * 120.72220 * 8 6 4 11 11 C 1.55053 * 106.62017 * 167.03600 * 10 8 6 12 12 S 1.83282 * 102.56645 * 317.56497 * 11 10 8 13 13 O 1.42107 * 109.35710 * 269.81606 * 12 11 10 14 14 O 1.42101 * 109.35292 * 136.61147 * 12 11 10 15 15 C 1.54161 * 109.64671 * 239.99634 * 8 6 4 16 16 N 1.46900 * 109.46727 * 240.00714 * 2 1 3 17 17 C 1.46902 * 111.00222 * 306.04336 * 16 2 1 18 18 C 1.46903 * 111.00403 * 69.99774 * 16 2 1 19 19 C 1.50699 * 109.46994 * 169.99846 * 18 16 2 20 20 H 1.08002 * 120.00516 * 359.97438 * 19 18 16 21 21 C 1.37884 * 119.99783 * 180.02562 * 19 18 16 22 22 N 1.31514 * 119.99707 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99956 * 180.27458 * 21 19 18 24 24 H 1.48497 * 109.47172 * 179.72730 * 23 21 19 25 25 H 1.48506 * 109.47132 * 299.72429 * 23 21 19 26 26 H 1.48501 * 109.47173 * 59.72550 * 23 21 19 27 27 H 1.09000 * 109.46935 * 299.99128 * 1 2 3 28 28 H 1.08999 * 109.46978 * 59.99874 * 1 2 3 29 29 H 1.08997 * 109.46855 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47219 * 90.00233 * 7 6 4 31 31 H 1.09009 * 109.47350 * 210.00292 * 7 6 4 32 32 H 1.09002 * 109.47260 * 329.99995 * 7 6 4 33 33 H 1.09003 * 110.03107 * 286.31925 * 10 8 6 34 34 H 1.08999 * 110.03267 * 47.74610 * 10 8 6 35 35 H 1.08999 * 110.78744 * 199.29872 * 11 10 8 36 36 H 1.09002 * 110.79404 * 75.83366 * 11 10 8 37 37 H 1.08997 * 110.32169 * 331.14390 * 15 8 6 38 38 H 1.09002 * 110.31600 * 93.33693 * 15 8 6 39 39 H 1.09000 * 109.47683 * 183.95859 * 17 16 2 40 40 H 1.09009 * 109.46935 * 303.95857 * 17 16 2 41 41 H 1.08999 * 109.47178 * 63.95342 * 17 16 2 42 42 H 1.09001 * 109.46349 * 50.00102 * 18 16 2 43 43 H 1.08997 * 109.46851 * 290.00085 * 18 16 2 44 44 H 0.97005 * 119.99656 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.7297 -1.6965 1.1189 6 7 1.7068 -0.2501 2.4545 7 6 0.8650 0.9412 2.5890 8 6 2.1948 -0.9412 3.6506 9 1 2.8069 -1.7939 3.3570 10 6 3.0356 0.0274 4.5007 11 6 3.2334 -0.6511 5.8808 12 16 1.5714 -1.3415 6.2277 13 8 0.7990 -0.3785 6.9317 14 8 1.7069 -2.6582 6.7445 15 6 0.9984 -1.4271 4.4927 16 7 2.0197 -0.6924 -1.1995 17 6 1.4343 -2.0353 -1.3081 18 6 1.7528 0.0974 -2.4091 19 6 2.4773 -0.5160 -3.5795 20 1 3.0764 -1.4036 -3.4389 21 6 2.3762 0.0565 -4.8298 22 7 1.6479 1.1381 -5.0008 23 14 3.2679 -0.7083 -6.2821 24 1 2.9945 0.0874 -7.5057 25 1 4.7288 -0.7200 -6.0156 26 1 2.7896 -2.1002 -6.4796 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.1830 0.6437 2.6222 31 1 1.1229 1.4665 3.5088 32 1 1.0289 1.6001 1.7363 33 1 4.0022 0.1976 4.0265 34 1 2.5071 0.9729 4.6220 35 1 3.5128 0.0832 6.6364 36 1 3.9770 -1.4457 5.8183 37 1 0.1402 -0.7717 4.3447 38 1 0.7419 -2.4532 4.2291 39 1 1.8664 -2.5519 -2.1651 40 1 1.6466 -2.5987 -0.3993 41 1 0.3556 -1.9519 -1.4401 42 1 2.1025 1.1191 -2.2603 43 1 0.6813 0.1055 -2.6087 44 1 1.5770 1.5411 -5.8803 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096969437.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:32 Heat of formation + Delta-G solvation = -75.569072 kcal Electronic energy + Delta-G solvation = -25803.374500 eV Core-core repulsion = 22077.362805 eV Total energy + Delta-G solvation = -3726.011695 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.44532 -37.72667 -37.40118 -36.40479 -36.19684 -34.27091 -32.68297 -30.64981 -29.57747 -27.35544 -27.08581 -25.72498 -25.24632 -23.70964 -21.78580 -20.20742 -19.25976 -18.96249 -17.52392 -17.24438 -16.59335 -16.41197 -16.12388 -15.88227 -15.22160 -14.84979 -14.56684 -14.47994 -14.25853 -14.12759 -13.68285 -13.21923 -13.08176 -12.98209 -12.76777 -12.55800 -12.53674 -12.46201 -12.37343 -12.26550 -11.80527 -11.60506 -11.33446 -11.15199 -11.09995 -11.01014 -10.87060 -10.75109 -10.67187 -10.45505 -9.98554 -9.43751 -9.14832 -8.87452 -8.45245 -7.24813 -6.05663 -4.06156 -0.39316 2.05630 2.71819 2.78007 3.17410 3.33392 3.36726 3.40792 3.61499 3.88090 4.08911 4.20314 4.36545 4.40591 4.49423 4.68393 4.81351 4.90811 5.02824 5.12976 5.16274 5.21390 5.30376 5.32757 5.39822 5.49035 5.51756 5.55369 5.85220 5.98647 6.20407 6.25989 6.36114 6.45789 6.85588 7.15670 7.25401 7.28408 7.77017 8.00832 8.14641 8.29932 8.50848 9.01526 9.58002 11.05278 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.035140 B = 0.002685 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.623706 B =10424.385084 C =10632.548284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.067 3.933 3 H 0.102 0.898 4 C 0.525 3.475 5 O -0.512 6.512 6 N -0.614 5.614 7 C 0.066 3.934 8 C 0.150 3.850 9 H 0.123 0.877 10 C -0.134 4.134 11 C -0.584 4.584 12 S 2.392 3.608 13 O -0.935 6.935 14 O -0.936 6.936 15 C -0.609 4.609 16 N -0.518 5.518 17 C 0.032 3.968 18 C 0.195 3.805 19 C -0.507 4.507 20 H 0.064 0.936 21 C 0.055 3.945 22 N -0.900 5.900 23 Si 0.899 3.101 24 H -0.288 1.288 25 H -0.276 1.276 26 H -0.277 1.277 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.011 0.989 42 H 0.028 0.972 43 H -0.005 1.005 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.799 0.394 21.977 22.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.046 4.046 3 H 0.119 0.881 4 C 0.314 3.686 5 O -0.385 6.385 6 N -0.350 5.350 7 C -0.077 4.077 8 C 0.044 3.956 9 H 0.141 0.859 10 C -0.173 4.173 11 C -0.714 4.714 12 S 2.574 3.426 13 O -0.932 6.932 14 O -0.933 6.933 15 C -0.740 4.740 16 N -0.241 5.241 17 C -0.116 4.116 18 C 0.070 3.930 19 C -0.545 4.545 20 H 0.082 0.918 21 C -0.146 4.146 22 N -0.540 5.540 23 Si 0.727 3.273 24 H -0.214 1.214 25 H -0.201 1.201 26 H -0.203 1.203 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.124 0.876 34 H 0.111 0.889 35 H 0.159 0.841 36 H 0.160 0.840 37 H 0.160 0.840 38 H 0.162 0.838 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.030 0.970 42 H 0.047 0.953 43 H 0.013 0.987 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.413 -0.333 22.616 22.662 hybrid contribution -0.189 0.140 -1.692 1.708 sum -1.602 -0.192 20.924 20.986 Atomic orbital electron populations 1.22675 0.96202 1.03018 1.03403 1.21601 0.93695 0.98775 0.90482 0.88065 1.21097 0.79277 0.84409 0.83829 1.90645 1.36425 1.25736 1.85655 1.47849 1.52703 1.29637 1.04825 1.22077 0.94705 0.87331 1.03581 1.21292 0.91847 0.96830 0.85666 0.85910 1.22609 1.03480 0.99300 0.91903 1.30578 1.22275 1.12674 1.05865 1.08995 0.79436 0.75844 0.78326 1.93632 1.67721 1.62213 1.69670 1.93630 1.85867 1.36847 1.76991 1.30978 1.08660 1.11948 1.22365 1.62088 1.57287 1.03012 1.01761 1.22360 0.95718 0.91317 1.02236 1.19778 0.95101 0.92989 0.85127 1.21124 1.29293 1.12094 0.92012 0.91799 1.24970 0.95606 0.95064 0.98919 1.69941 1.40130 1.20506 1.23439 0.86539 0.80246 0.79123 0.81386 1.21378 1.20133 1.20253 0.91618 0.90703 0.92074 0.91910 0.90947 0.89661 0.87612 0.88926 0.84097 0.84026 0.83960 0.83752 0.90941 0.92048 0.97045 0.95348 0.98679 0.92877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.74 8.08 37.16 0.30 -2.44 16 2 C 0.07 1.11 1.93 -68.86 -0.13 0.98 16 3 H 0.10 1.59 7.19 -51.93 -0.37 1.22 16 4 C 0.53 7.98 6.77 -10.99 -0.07 7.90 16 5 O -0.51 -9.55 13.67 5.56 0.08 -9.48 16 6 N -0.61 -6.41 2.78 -172.72 -0.48 -6.89 16 7 C 0.07 0.49 7.66 59.84 0.46 0.94 16 8 C 0.15 1.25 2.94 -66.87 -0.20 1.05 16 9 H 0.12 1.20 6.91 -51.93 -0.36 0.84 16 10 C -0.13 -0.78 5.92 -25.19 -0.15 -0.93 16 11 C -0.58 -2.70 7.31 38.24 0.28 -2.42 16 12 S 2.39 16.89 6.11 -107.50 -0.66 16.23 16 13 O -0.94 -9.48 18.15 -57.71 -1.05 -10.53 16 14 O -0.94 -10.19 18.15 -57.71 -1.05 -11.23 16 15 C -0.61 -4.05 6.85 37.76 0.26 -3.79 16 16 N -0.52 -11.16 4.44 -237.72 -1.06 -12.22 16 17 C 0.03 0.66 8.31 60.07 0.50 1.15 16 18 C 0.19 4.91 4.29 -4.97 -0.02 4.89 16 19 C -0.51 -14.17 8.51 -34.44 -0.29 -14.46 16 20 H 0.06 1.80 7.10 -52.49 -0.37 1.43 16 21 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 22 N -0.90 -26.22 13.29 55.43 0.74 -25.48 16 23 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 H 0.07 0.68 4.53 -51.93 -0.24 0.44 16 28 H 0.07 1.19 6.91 -51.93 -0.36 0.83 16 29 H 0.06 0.90 6.41 -51.93 -0.33 0.57 16 30 H 0.06 0.40 6.72 -51.93 -0.35 0.05 16 31 H 0.07 0.35 6.25 -51.92 -0.32 0.03 16 32 H 0.08 0.65 6.01 -51.93 -0.31 0.33 16 33 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 0.41 6.31 -51.93 -0.33 0.08 16 35 H 0.14 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.14 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.14 0.79 6.94 -51.93 -0.36 0.43 16 38 H 0.14 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.07 1.60 6.86 -51.93 -0.36 1.25 16 40 H 0.06 1.21 5.82 -51.92 -0.30 0.90 16 41 H 0.01 0.22 6.46 -51.93 -0.34 -0.12 16 42 H 0.03 0.75 7.93 -51.93 -0.41 0.34 16 43 H 0.00 -0.12 7.06 -51.93 -0.37 -0.49 16 44 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 347.75 15.07 5.24 5.24 Total: -1.00 -37.58 347.75 -8.73 -46.31 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -6.30 Total: -2.89 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: 0.83 Total: -5.66 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: -0.80 Total: -44.59 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -2.02 Total: -31.24 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 16.89 SS G_CDS: -0.66 Total: 16.23 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -37.58 -8.73 -46.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096969437.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.262 kcal (2) G-P(sol) polarization free energy of solvation -37.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds