Wall clock time and date at job start Fri Apr 10 2020 18:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 119.99889 * 2 1 4 4 C 1.50705 * 109.46927 * 84.92407 * 3 2 1 5 5 H 1.08000 * 120.00285 * 355.00866 * 4 3 2 6 6 C 1.37880 * 119.99686 * 175.01125 * 4 3 2 7 7 N 1.31510 * 120.00208 * 5.50707 * 6 4 3 8 8 Si 1.86805 * 119.99817 * 185.50761 * 6 4 3 9 9 H 1.48497 * 109.47236 * 54.99654 * 8 6 4 10 10 H 1.48498 * 109.47281 * 174.99845 * 8 6 4 11 11 H 1.48495 * 109.46894 * 294.99931 * 8 6 4 12 12 S 1.65603 * 120.00032 * 180.02562 * 2 1 3 13 13 O 1.42099 * 106.40242 * 28.73636 * 12 2 1 14 14 O 1.42102 * 106.39935 * 161.65876 * 12 2 1 15 15 N 1.65601 * 107.21684 * 275.19397 * 12 2 1 16 16 C 1.46494 * 120.00408 * 262.90552 * 15 12 2 17 17 C 1.53004 * 109.47245 * 252.83711 * 16 15 12 18 18 H 1.08996 * 110.43298 * 300.67191 * 17 16 15 19 19 C 1.54805 * 110.49122 * 177.98160 * 17 16 15 20 20 C 1.54992 * 102.09488 * 220.44348 * 19 17 16 21 21 O 1.44375 * 103.49006 * 37.02606 * 20 19 17 22 22 C 1.43750 * 106.97657 * 319.93805 * 21 20 19 23 23 C 1.46506 * 119.99520 * 82.90544 * 15 12 2 24 24 C 1.53004 * 117.49677 * 183.25264 * 23 15 12 25 25 C 1.53000 * 117.49867 * 114.59706 * 23 15 12 26 26 H 1.09001 * 109.47322 * 89.99591 * 1 2 3 27 27 H 1.09001 * 109.47115 * 210.00043 * 1 2 3 28 28 H 1.08999 * 109.47153 * 329.99843 * 1 2 3 29 29 H 1.08992 * 109.47305 * 324.92302 * 3 2 1 30 30 H 1.09009 * 109.47152 * 204.91781 * 3 2 1 31 31 H 0.97007 * 120.00272 * 180.02562 * 7 6 4 32 32 H 1.09001 * 109.46848 * 12.83591 * 16 15 12 33 33 H 1.09002 * 109.47169 * 132.84031 * 16 15 12 34 34 H 1.09000 * 110.90662 * 338.64694 * 19 17 16 35 35 H 1.09005 * 110.90444 * 102.24396 * 19 17 16 36 36 H 1.09003 * 110.61733 * 278.52236 * 20 19 17 37 37 H 1.08999 * 110.74985 * 155.58973 * 20 19 17 38 38 H 1.08999 * 109.87545 * 267.09629 * 22 21 20 39 39 H 1.08999 * 109.88215 * 145.93815 * 22 21 20 40 40 H 1.08998 * 115.55131 * 328.92634 * 23 15 12 41 41 H 1.09002 * 117.49605 * 0.02562 * 24 23 15 42 42 H 1.09001 * 117.49411 * 145.01757 * 24 23 15 43 43 H 1.08999 * 117.49819 * 214.97786 * 25 23 15 44 44 H 1.09001 * 117.49816 * 359.97109 * 25 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3397 1.7666 1.4153 5 1 1.8575 1.2385 2.2246 6 6 3.0855 2.8964 1.6769 7 7 3.5824 3.6009 0.6838 8 14 3.3901 3.4264 3.4421 9 1 3.9989 2.3027 4.1983 10 1 4.3122 4.5903 3.4574 11 1 2.1014 3.8074 4.0739 12 16 2.2930 -1.4342 -0.0006 13 8 1.4585 -2.3790 -0.6564 14 8 3.6142 -1.1344 -0.4295 15 7 2.4141 -1.9310 1.5744 16 6 3.6319 -1.6514 2.3392 17 6 4.4256 -2.9461 2.5256 18 1 3.8259 -3.6874 3.0535 19 6 5.7439 -2.6685 3.2881 20 6 6.7526 -3.5701 2.5319 21 8 6.3240 -3.4748 1.1565 22 6 4.8867 -3.4970 1.1622 23 6 1.3032 -2.6501 2.2031 24 6 1.4449 -3.0154 3.6821 25 6 1.5443 -4.1048 2.6114 26 1 -0.3634 0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6508 2.0039 -0.5905 30 1 3.1863 1.1174 -0.4330 31 1 4.1074 4.3956 0.8679 32 1 4.2411 -0.9261 1.7998 33 1 3.3632 -1.2463 3.3149 34 1 6.0254 -1.6185 3.2090 35 1 5.6600 -2.9696 4.3324 36 1 6.6863 -4.5995 2.8841 37 1 7.7686 -3.1918 2.6444 38 1 4.5313 -4.5197 1.0364 39 1 4.5030 -2.8676 0.3592 40 1 0.3088 -2.3867 1.8427 41 1 2.3645 -2.7202 4.1875 42 1 0.5436 -2.9925 4.2947 43 1 0.7083 -4.7983 2.5201 44 1 2.5292 -4.5269 2.4119 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097298204.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:39 Heat of formation + Delta-G solvation = -83.479061 kcal Electronic energy + Delta-G solvation = -27417.642349 eV Core-core repulsion = 23691.287651 eV Total energy + Delta-G solvation = -3726.354698 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.70991 -37.88928 -36.72743 -35.51180 -35.27540 -33.73777 -32.51238 -31.68050 -29.14255 -27.83111 -25.65265 -25.11770 -22.68755 -22.34892 -22.31749 -21.38629 -20.27882 -18.74290 -17.59211 -16.94299 -16.54841 -16.20872 -16.04191 -15.68008 -15.06709 -14.89006 -14.73662 -14.36942 -13.80287 -13.47359 -13.28511 -12.96708 -12.74273 -12.53988 -12.20802 -12.18223 -12.00949 -11.71031 -11.60409 -11.51454 -11.42164 -11.38166 -11.17871 -11.13960 -10.96922 -10.80239 -10.68462 -10.53461 -10.34778 -10.28940 -10.08423 -9.80520 -9.50642 -8.60684 -8.51079 -8.06089 -6.13705 -4.19933 1.16784 3.22631 3.27808 3.29602 3.34006 3.77272 4.03432 4.13914 4.33617 4.53718 4.66755 4.83202 4.87217 4.90494 4.98959 5.07068 5.19977 5.21716 5.24302 5.31034 5.46201 5.55688 5.63177 5.70311 5.74377 5.78101 5.88587 5.99068 6.02047 6.03219 6.07864 6.14633 6.20308 6.28755 6.42067 6.53808 6.83687 7.00837 7.30928 7.39080 7.61876 7.83177 8.12990 8.84615 9.45803 10.94415 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011141 B = 0.006637 C = 0.005489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.652411 B = 4217.649148 C = 5100.202681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.995 5.995 3 C 0.243 3.757 4 C -0.541 4.541 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.893 3.107 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.278 1.278 12 S 2.781 3.219 13 O -0.993 6.993 14 O -0.966 6.966 15 N -0.975 5.975 16 C 0.131 3.869 17 C -0.147 4.147 18 H 0.093 0.907 19 C -0.149 4.149 20 C 0.045 3.955 21 O -0.372 6.372 22 C 0.042 3.958 23 C 0.095 3.905 24 C -0.181 4.181 25 C -0.200 4.200 26 H 0.045 0.955 27 H 0.049 0.951 28 H 0.074 0.926 29 H 0.036 0.964 30 H 0.054 0.946 31 H 0.265 0.735 32 H 0.106 0.894 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.055 0.945 37 H 0.091 0.909 38 H 0.053 0.947 39 H 0.094 0.906 40 H 0.126 0.874 41 H 0.102 0.898 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.040 -13.287 7.056 15.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.837 5.837 3 C 0.121 3.879 4 C -0.581 4.581 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.720 3.280 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.203 1.203 12 S 2.790 3.210 13 O -0.977 6.977 14 O -0.950 6.950 15 N -0.809 5.809 16 C 0.006 3.994 17 C -0.168 4.168 18 H 0.111 0.889 19 C -0.188 4.188 20 C -0.031 4.031 21 O -0.291 6.291 22 C -0.035 4.035 23 C -0.013 4.013 24 C -0.220 4.220 25 C -0.239 4.239 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.093 0.907 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.124 0.876 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.109 0.891 38 H 0.071 0.929 39 H 0.112 0.888 40 H 0.143 0.857 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.458 -13.499 6.005 14.846 hybrid contribution -0.202 0.637 1.670 1.799 sum -1.661 -12.861 7.675 15.069 Atomic orbital electron populations 1.21250 0.80247 1.01929 1.00695 1.57680 1.14164 1.23478 1.88426 1.19246 0.92291 0.78705 0.97619 1.21490 1.32146 1.11196 0.93218 0.91969 1.24955 0.95506 0.96121 0.97205 1.69928 1.34842 1.16704 1.31028 0.86651 0.78179 0.78232 0.84910 1.19988 1.21168 1.20348 1.02015 0.73348 0.72742 0.72849 1.93548 1.69774 1.61836 1.72547 1.93591 1.37197 1.84610 1.79640 1.57729 1.21592 1.69393 1.32219 1.21365 0.84217 0.95564 0.98270 1.23245 0.97287 0.99566 0.96670 0.88918 1.23170 0.94163 1.01974 0.99480 1.23526 0.98880 0.98416 0.82317 1.88907 1.20112 1.95016 1.25056 1.23439 0.81436 1.00212 0.98392 1.21270 0.90377 0.93543 0.96123 1.23267 1.03961 1.03162 0.91591 1.23575 1.03608 0.92740 1.04014 0.93601 0.93249 0.90690 0.94550 0.92835 0.92479 0.87599 0.90296 0.89623 0.90212 0.92637 0.89074 0.92902 0.88826 0.85682 0.87987 0.88232 0.88337 0.88215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.79 10.31 59.85 0.62 2.41 16 2 N -1.00 -20.63 3.23 -123.05 -0.40 -21.02 16 3 C 0.24 6.03 5.40 -5.19 -0.03 6.00 16 4 C -0.54 -13.96 9.38 -34.44 -0.32 -14.28 16 5 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 6 C 0.07 1.75 5.45 -17.82 -0.10 1.66 16 7 N -0.89 -25.17 13.30 55.43 0.74 -24.43 16 8 Si 0.89 20.34 29.54 -169.99 -5.02 15.31 16 9 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 12 S 2.78 55.77 5.48 -107.50 -0.59 55.19 16 13 O -0.99 -20.52 16.78 -57.17 -0.96 -21.48 16 14 O -0.97 -22.27 13.04 -57.17 -0.75 -23.01 16 15 N -0.98 -16.04 2.93 -107.30 -0.31 -16.35 16 16 C 0.13 2.09 4.23 -4.04 -0.02 2.08 16 17 C -0.15 -1.98 2.37 -89.09 -0.21 -2.19 16 18 H 0.09 1.06 4.41 -51.93 -0.23 0.83 16 19 C -0.15 -1.77 6.71 -24.73 -0.17 -1.93 16 20 C 0.05 0.55 7.72 38.21 0.29 0.85 16 21 O -0.37 -6.17 11.52 -35.23 -0.41 -6.58 16 22 C 0.04 0.67 7.12 37.73 0.27 0.94 16 23 C 0.09 1.27 6.11 -67.93 -0.41 0.86 16 24 C -0.18 -1.94 9.40 -26.69 -0.25 -2.19 16 25 C -0.20 -2.22 9.72 -26.70 -0.26 -2.48 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.71 6.84 -51.93 -0.35 0.36 16 28 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 29 H 0.04 0.94 8.11 -51.93 -0.42 0.52 16 30 H 0.05 1.46 6.87 -51.92 -0.36 1.11 16 31 H 0.27 7.15 8.31 -40.82 -0.34 6.82 16 32 H 0.11 2.01 7.01 -51.93 -0.36 1.65 16 33 H 0.08 1.16 7.04 -51.93 -0.37 0.79 16 34 H 0.09 1.10 7.87 -51.93 -0.41 0.69 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.09 1.75 4.59 -51.93 -0.24 1.52 16 40 H 0.13 1.59 7.05 -51.93 -0.37 1.22 16 41 H 0.10 1.09 5.78 -51.93 -0.30 0.79 16 42 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.10 1.12 5.78 -51.93 -0.30 0.82 16 LS Contribution 353.60 15.07 5.33 5.33 Total: -1.00 -31.70 353.60 -9.58 -41.29 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -6.63 Total: 4.05 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -0.59 Total: -8.29 kcal Atomic # 7 Polarization: -61.84 SS G_CDS: 0.03 Total: -61.81 kcal Atomic # 8 Polarization: -48.96 SS G_CDS: -2.11 Total: -51.07 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 16 Polarization: 55.77 SS G_CDS: -0.59 Total: 55.19 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.70 -9.58 -41.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097298204.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.191 kcal (2) G-P(sol) polarization free energy of solvation -31.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds