Wall clock time and date at job start Fri Apr 10 2020 18:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 119.99889 * 2 1 4 4 C 1.50705 * 109.46927 * 84.92407 * 3 2 1 5 5 H 1.08000 * 120.00285 * 355.00866 * 4 3 2 6 6 C 1.37880 * 119.99686 * 175.01125 * 4 3 2 7 7 N 1.31510 * 120.00208 * 5.50707 * 6 4 3 8 8 Si 1.86805 * 119.99817 * 185.50761 * 6 4 3 9 9 H 1.48497 * 109.47236 * 54.99654 * 8 6 4 10 10 H 1.48498 * 109.47281 * 174.99845 * 8 6 4 11 11 H 1.48495 * 109.46894 * 294.99931 * 8 6 4 12 12 S 1.65603 * 120.00032 * 180.02562 * 2 1 3 13 13 O 1.42099 * 106.40242 * 28.73636 * 12 2 1 14 14 O 1.42102 * 106.39935 * 161.65876 * 12 2 1 15 15 N 1.65601 * 107.21684 * 275.19397 * 12 2 1 16 16 C 1.46494 * 120.00408 * 262.90552 * 15 12 2 17 17 C 1.53004 * 109.47245 * 252.83711 * 16 15 12 18 18 H 1.08996 * 110.43298 * 300.67191 * 17 16 15 19 19 C 1.54805 * 110.49122 * 177.98160 * 17 16 15 20 20 C 1.54992 * 102.09488 * 220.44348 * 19 17 16 21 21 O 1.44375 * 103.49006 * 37.02606 * 20 19 17 22 22 C 1.43750 * 106.97657 * 319.93805 * 21 20 19 23 23 C 1.46506 * 119.99520 * 82.90544 * 15 12 2 24 24 C 1.53004 * 117.49677 * 183.25264 * 23 15 12 25 25 C 1.53000 * 117.49867 * 114.59706 * 23 15 12 26 26 H 1.09001 * 109.47322 * 89.99591 * 1 2 3 27 27 H 1.09001 * 109.47115 * 210.00043 * 1 2 3 28 28 H 1.08999 * 109.47153 * 329.99843 * 1 2 3 29 29 H 1.08992 * 109.47305 * 324.92302 * 3 2 1 30 30 H 1.09009 * 109.47152 * 204.91781 * 3 2 1 31 31 H 0.97007 * 120.00272 * 180.02562 * 7 6 4 32 32 H 1.09001 * 109.46848 * 12.83591 * 16 15 12 33 33 H 1.09002 * 109.47169 * 132.84031 * 16 15 12 34 34 H 1.09000 * 110.90662 * 338.64694 * 19 17 16 35 35 H 1.09005 * 110.90444 * 102.24396 * 19 17 16 36 36 H 1.09003 * 110.61733 * 278.52236 * 20 19 17 37 37 H 1.08999 * 110.74985 * 155.58973 * 20 19 17 38 38 H 1.08999 * 109.87545 * 267.09629 * 22 21 20 39 39 H 1.08999 * 109.88215 * 145.93815 * 22 21 20 40 40 H 1.08998 * 115.55131 * 328.92634 * 23 15 12 41 41 H 1.09002 * 117.49605 * 0.02562 * 24 23 15 42 42 H 1.09001 * 117.49411 * 145.01757 * 24 23 15 43 43 H 1.08999 * 117.49819 * 214.97786 * 25 23 15 44 44 H 1.09001 * 117.49816 * 359.97109 * 25 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3397 1.7666 1.4153 5 1 1.8575 1.2385 2.2246 6 6 3.0855 2.8964 1.6769 7 7 3.5824 3.6009 0.6838 8 14 3.3901 3.4264 3.4421 9 1 3.9989 2.3027 4.1983 10 1 4.3122 4.5903 3.4574 11 1 2.1014 3.8074 4.0739 12 16 2.2930 -1.4342 -0.0006 13 8 1.4585 -2.3790 -0.6564 14 8 3.6142 -1.1344 -0.4295 15 7 2.4141 -1.9310 1.5744 16 6 3.6319 -1.6514 2.3392 17 6 4.4256 -2.9461 2.5256 18 1 3.8259 -3.6874 3.0535 19 6 5.7439 -2.6685 3.2881 20 6 6.7526 -3.5701 2.5319 21 8 6.3240 -3.4748 1.1565 22 6 4.8867 -3.4970 1.1622 23 6 1.3032 -2.6501 2.2031 24 6 1.4449 -3.0154 3.6821 25 6 1.5443 -4.1048 2.6114 26 1 -0.3634 0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6508 2.0039 -0.5905 30 1 3.1863 1.1174 -0.4330 31 1 4.1074 4.3956 0.8679 32 1 4.2411 -0.9261 1.7998 33 1 3.3632 -1.2463 3.3149 34 1 6.0254 -1.6185 3.2090 35 1 5.6600 -2.9696 4.3324 36 1 6.6863 -4.5995 2.8841 37 1 7.7686 -3.1918 2.6444 38 1 4.5313 -4.5197 1.0364 39 1 4.5030 -2.8676 0.3592 40 1 0.3088 -2.3867 1.8427 41 1 2.3645 -2.7202 4.1875 42 1 0.5436 -2.9925 4.2947 43 1 0.7083 -4.7983 2.5201 44 1 2.5292 -4.5269 2.4119 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097298204.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:38 Heat of formation + Delta-G solvation = -106.074965 kcal Electronic energy + Delta-G solvation = -27418.622181 eV Core-core repulsion = 23691.287651 eV Total energy + Delta-G solvation = -3727.334530 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.81060 -38.95301 -38.36823 -37.24009 -36.94511 -34.85120 -34.49219 -32.81382 -30.20266 -29.68734 -26.90970 -26.77288 -24.22954 -23.65779 -23.20162 -22.48123 -21.40727 -20.08085 -19.10192 -18.64569 -18.32865 -17.50114 -17.31750 -16.97118 -16.60996 -16.11918 -15.98132 -15.65928 -15.13625 -15.08931 -14.74202 -14.23822 -14.05468 -13.93194 -13.73601 -13.67141 -13.38009 -13.16087 -13.03806 -12.96756 -12.93538 -12.82508 -12.48941 -12.41639 -12.35152 -12.26762 -12.01381 -11.90403 -11.76775 -11.71633 -11.40575 -11.20721 -10.64267 -10.57908 -9.84978 -9.68158 -8.17666 -6.31580 -0.38689 1.42877 1.45118 1.53044 1.88254 2.40995 2.46128 2.98568 3.00438 3.14230 3.29871 3.49956 3.69132 3.82106 3.91230 3.93424 4.07855 4.10872 4.19586 4.25905 4.34102 4.40521 4.63855 4.65216 4.72186 4.75315 4.80864 4.83061 4.84990 4.93170 5.01036 5.03495 5.09325 5.22229 5.26467 5.29204 5.32362 5.39957 5.66133 5.74362 5.93554 5.94939 6.08895 6.79950 7.38559 8.90715 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011141 B = 0.006637 C = 0.005489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.652411 B = 4217.649148 C = 5100.202681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -1.004 6.004 3 C 0.258 3.742 4 C -0.541 4.541 5 H 0.073 0.927 6 C 0.010 3.990 7 N -0.929 5.929 8 Si 0.959 3.041 9 H -0.259 1.259 10 H -0.290 1.290 11 H -0.266 1.266 12 S 2.791 3.209 13 O -1.002 7.002 14 O -1.006 7.006 15 N -0.968 5.968 16 C 0.131 3.869 17 C -0.137 4.137 18 H 0.122 0.878 19 C -0.146 4.146 20 C 0.039 3.961 21 O -0.407 6.407 22 C 0.035 3.965 23 C 0.053 3.947 24 C -0.159 4.159 25 C -0.190 4.190 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.017 0.983 30 H 0.017 0.983 31 H 0.265 0.735 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.068 0.932 35 H 0.117 0.883 36 H 0.082 0.918 37 H 0.102 0.898 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.130 0.870 41 H 0.106 0.894 42 H 0.122 0.878 43 H 0.117 0.883 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.990 -15.219 10.650 18.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.845 5.845 3 C 0.134 3.866 4 C -0.580 4.580 5 H 0.092 0.908 6 C -0.190 4.190 7 N -0.569 5.569 8 Si 0.783 3.217 9 H -0.183 1.183 10 H -0.215 1.215 11 H -0.191 1.191 12 S 2.801 3.199 13 O -0.986 6.986 14 O -0.990 6.990 15 N -0.806 5.806 16 C 0.005 3.995 17 C -0.157 4.157 18 H 0.140 0.860 19 C -0.184 4.184 20 C -0.037 4.037 21 O -0.327 6.327 22 C -0.042 4.042 23 C -0.054 4.054 24 C -0.197 4.197 25 C -0.229 4.229 26 H 0.073 0.927 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.035 0.965 30 H 0.035 0.965 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.087 0.913 35 H 0.135 0.865 36 H 0.100 0.900 37 H 0.120 0.880 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.148 0.852 41 H 0.125 0.875 42 H 0.141 0.859 43 H 0.135 0.865 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.443 -15.454 9.597 18.355 hybrid contribution 0.072 1.161 0.507 1.269 sum -2.371 -14.294 10.105 17.664 Atomic orbital electron populations 1.21504 0.78080 1.03462 1.01870 1.57610 1.15689 1.22129 1.89115 1.18775 0.90739 0.80010 0.97050 1.21750 1.31697 1.10950 0.93620 0.90849 1.25875 0.95279 0.96282 1.01557 1.70077 1.35964 1.17352 1.33493 0.85587 0.78381 0.77992 0.79691 1.18295 1.21538 1.19122 1.01460 0.72253 0.72416 0.73749 1.93519 1.69798 1.61689 1.73592 1.93542 1.39284 1.85116 1.81065 1.57343 1.22794 1.69448 1.30973 1.21382 0.83842 0.96317 0.97923 1.23221 0.98053 0.98622 0.95815 0.85998 1.23210 0.92836 1.01097 1.01280 1.23825 0.99485 1.00156 0.80262 1.88865 1.20447 1.95296 1.28078 1.23462 0.81505 1.00525 0.98740 1.21664 0.89457 0.95486 0.98761 1.23394 1.05207 1.01117 0.89999 1.23661 1.04325 0.91766 1.03191 0.92718 0.90317 0.90510 0.96465 0.96487 0.92581 0.91726 0.88590 0.91324 0.86480 0.89955 0.87964 0.91244 0.92467 0.85212 0.87541 0.85944 0.86469 0.88311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.23 10.31 127.77 1.32 4.55 16 2 N -1.00 -42.66 3.23 -543.22 -1.75 -44.41 16 3 C 0.26 13.40 5.40 85.63 0.46 13.86 16 4 C -0.54 -28.33 9.38 25.60 0.24 -28.09 16 5 H 0.07 3.59 7.82 -2.91 -0.02 3.57 16 6 C 0.01 0.52 5.45 84.66 0.46 0.98 16 7 N -0.93 -54.47 13.30 21.45 0.29 -54.18 16 8 Si 0.96 41.39 29.54 68.60 2.03 43.42 16 9 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 10 H -0.29 -12.58 7.11 99.48 0.71 -11.88 16 11 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 12 S 2.79 114.99 5.48 -56.49 -0.31 114.68 16 13 O -1.00 -41.68 16.78 -128.00 -2.15 -43.83 16 14 O -1.01 -49.46 13.04 -128.00 -1.67 -51.13 16 15 N -0.97 -31.15 2.93 -493.38 -1.45 -32.60 16 16 C 0.13 4.08 4.23 86.38 0.37 4.44 16 17 C -0.14 -3.43 2.37 -9.80 -0.02 -3.45 16 18 H 0.12 2.32 4.41 -2.39 -0.01 2.31 16 19 C -0.15 -3.09 6.71 31.89 0.21 -2.88 16 20 C 0.04 0.86 7.72 72.66 0.56 1.42 16 21 O -0.41 -13.52 11.52 -148.98 -1.72 -15.23 16 22 C 0.03 1.09 7.12 72.36 0.52 1.61 16 23 C 0.05 1.28 6.11 44.99 0.27 1.55 16 24 C -0.16 -2.69 9.40 30.62 0.29 -2.40 16 25 C -0.19 -3.50 9.72 30.62 0.30 -3.20 16 26 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.08 2.15 6.84 -2.39 -0.02 2.13 16 28 H 0.08 2.53 8.07 -2.39 -0.02 2.51 16 29 H 0.02 0.94 8.11 -2.39 -0.02 0.92 16 30 H 0.02 1.00 6.87 -2.38 -0.02 0.99 16 31 H 0.27 14.74 8.31 -92.70 -0.77 13.97 16 32 H 0.06 2.57 7.01 -2.39 -0.02 2.55 16 33 H 0.10 2.61 7.04 -2.39 -0.02 2.59 16 34 H 0.07 1.69 7.87 -2.39 -0.02 1.67 16 35 H 0.12 1.62 8.14 -2.38 -0.02 1.60 16 36 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.06 2.24 4.59 -2.39 -0.01 2.23 16 40 H 0.13 2.96 7.05 -2.39 -0.02 2.95 16 41 H 0.11 1.74 5.78 -2.39 -0.01 1.73 16 42 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.10 1.85 5.78 -2.39 -0.01 1.84 16 Total: -1.00 -72.24 353.60 -0.76 -73.00 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: 1.00 Total: 21.90 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: 4.97 Total: -11.61 kcal Atomic # 7 Polarization: -128.27 SS G_CDS: -2.92 Total: -131.19 kcal Atomic # 8 Polarization: -104.66 SS G_CDS: -5.53 Total: -110.19 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Atomic # 16 Polarization: 114.99 SS G_CDS: -0.31 Total: 114.68 kcal Total: -72.24 -0.76 -73.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097298204.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.076 kcal (2) G-P(sol) polarization free energy of solvation -72.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds