Wall clock time and date at job start Fri Apr 10 2020 18:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47159 * 2 1 4 4 C 1.50696 * 109.47139 * 239.99467 * 2 1 3 5 5 H 1.08001 * 119.99924 * 240.00188 * 4 2 1 6 6 C 1.37874 * 120.00116 * 60.00384 * 4 2 1 7 7 N 1.31509 * 120.00196 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00146 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47124 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47321 * 119.99690 * 8 6 4 11 11 H 1.48498 * 109.47078 * 240.00179 * 8 6 4 12 12 N 1.46499 * 109.46481 * 119.99677 * 2 1 3 13 13 C 1.46494 * 120.00485 * 54.77431 * 12 2 1 14 14 C 1.34783 * 119.99861 * 234.76919 * 12 2 1 15 15 O 1.21282 * 120.00183 * 184.49424 * 14 12 2 16 16 C 1.50699 * 119.99623 * 4.49691 * 14 12 2 17 17 H 1.09005 * 109.52617 * 311.96005 * 16 14 12 18 18 C 1.53035 * 109.49981 * 72.04344 * 16 14 12 19 19 C 1.53044 * 109.53983 * 181.31332 * 18 16 14 20 20 C 1.53184 * 109.31323 * 298.63593 * 19 18 16 21 21 N 1.46927 * 108.77871 * 54.63413 * 20 19 18 22 22 S 1.65597 * 120.63371 * 126.36686 * 21 20 19 23 23 C 1.81401 * 104.45073 * 90.00290 * 22 21 20 24 24 O 1.42096 * 104.27850 * 206.07646 * 22 21 20 25 25 O 1.42095 * 104.27441 * 333.93106 * 22 21 20 26 26 C 1.46924 * 118.73603 * 306.64377 * 21 20 19 27 27 H 1.09008 * 109.47045 * 60.00324 * 1 2 3 28 28 H 1.09003 * 109.47473 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47523 * 300.00946 * 1 2 3 30 30 H 0.97001 * 120.00580 * 180.02562 * 7 6 4 31 31 H 1.09002 * 109.47132 * 275.41037 * 13 12 2 32 32 H 1.09004 * 109.47201 * 35.40947 * 13 12 2 33 33 H 1.08997 * 109.47893 * 155.41221 * 13 12 2 34 34 H 1.08999 * 109.45858 * 61.29660 * 18 16 14 35 35 H 1.09004 * 109.45317 * 301.32827 * 18 16 14 36 36 H 1.08999 * 109.49732 * 178.68492 * 19 18 16 37 37 H 1.09004 * 109.49426 * 58.58953 * 19 18 16 38 38 H 1.09000 * 109.58786 * 294.84611 * 20 19 18 39 39 H 1.08994 * 109.58912 * 174.42202 * 20 19 18 40 40 H 1.09000 * 109.47365 * 179.97438 * 23 22 21 41 41 H 1.09006 * 109.46697 * 300.00374 * 23 22 21 42 42 H 1.09003 * 109.46840 * 59.99585 * 23 22 21 43 43 H 1.09005 * 109.58668 * 173.13985 * 26 21 20 44 44 H 1.08999 * 109.58800 * 293.56705 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8294 -2.6035 8 14 2.3226 -1.1199 -4.0078 9 1 3.1484 -2.2859 -3.6035 10 1 1.1680 -1.5870 -4.8163 11 1 3.1474 -0.1862 -4.8159 12 7 2.0182 -0.6906 1.1962 13 6 1.5724 -2.0553 1.4875 14 6 2.8776 -0.0703 2.0289 15 8 3.3451 -0.6692 2.9742 16 6 3.2576 1.3675 1.7852 17 1 3.5292 1.5001 0.7379 18 6 2.0718 2.2737 2.1240 19 6 2.4457 3.7314 1.8457 20 6 3.6280 4.1297 2.7346 21 7 4.7236 3.1744 2.5206 22 16 6.2386 3.7051 2.1142 23 6 7.0739 3.9516 3.7055 24 8 6.8159 2.6130 1.4119 25 8 6.0123 4.9520 1.4714 26 6 4.4478 1.7388 2.6679 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8898 30 1 0.7083 1.1606 -3.4845 31 1 0.6195 -2.0213 2.0157 32 1 1.4509 -2.6049 0.5540 33 1 2.3149 -2.5552 2.1095 34 1 1.8166 2.1591 3.1774 35 1 1.2150 1.9951 1.5103 36 1 1.5930 4.3740 2.0651 37 1 2.7249 3.8417 0.7978 38 1 3.3226 4.1071 3.7807 39 1 3.9616 5.1333 2.4709 40 1 8.0903 4.3047 3.5315 41 1 6.5275 4.6904 4.2919 42 1 7.1056 3.0074 4.2492 43 1 5.3222 1.1653 2.3601 44 1 4.2106 1.5172 3.7085 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103442064.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:52 Heat of formation + Delta-G solvation = -104.856850 kcal Electronic energy + Delta-G solvation = -26765.711588 eV Core-core repulsion = 23038.429879 eV Total energy + Delta-G solvation = -3727.281709 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.79828 -37.58394 -37.16233 -35.92730 -35.59499 -32.67041 -32.46022 -31.11480 -29.61269 -29.16392 -26.64981 -25.31144 -24.46919 -23.35061 -21.41875 -20.64729 -18.74639 -18.20434 -17.65587 -16.67043 -16.43924 -16.26119 -15.95433 -15.19452 -14.65961 -14.55960 -14.43053 -14.15465 -13.82398 -13.42057 -13.34681 -13.30210 -13.10036 -12.66502 -12.54197 -12.15482 -12.08423 -11.96929 -11.81807 -11.66632 -11.35818 -11.32504 -11.11727 -11.02455 -10.92794 -10.82403 -10.70897 -10.58296 -10.33826 -10.22611 -10.12897 -9.35461 -9.07731 -8.82500 -8.51787 -7.63627 -6.16817 -4.24894 0.18033 2.56424 3.23471 3.31599 3.33470 3.38802 3.84655 3.93521 4.08433 4.34798 4.50049 4.73648 4.77615 5.04117 5.11136 5.14754 5.26183 5.30895 5.44212 5.45692 5.55760 5.71955 5.84108 5.93472 6.01323 6.14087 6.22269 6.27698 6.30386 6.42195 6.47473 6.53053 6.60033 6.64136 6.72008 6.89316 7.20340 7.39490 7.67458 7.87543 8.12155 8.42403 8.76665 8.99070 9.43590 10.87644 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014271 B = 0.004649 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.538285 B = 6021.783495 C = 6658.115836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.249 3.751 3 H 0.060 0.940 4 C -0.530 4.530 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 N -0.589 5.589 13 C 0.092 3.908 14 C 0.519 3.481 15 O -0.579 6.579 16 C -0.117 4.117 17 H 0.108 0.892 18 C -0.109 4.109 19 C -0.128 4.128 20 C 0.118 3.882 21 N -0.998 5.998 22 S 2.608 3.392 23 C -0.675 4.675 24 O -0.949 6.949 25 O -0.956 6.956 26 C 0.139 3.861 27 H 0.094 0.906 28 H 0.033 0.967 29 H 0.013 0.987 30 H 0.264 0.736 31 H 0.040 0.960 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.092 0.908 40 H 0.124 0.876 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.096 0.904 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.702 7.594 12.393 15.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.148 3.852 3 H 0.078 0.922 4 C -0.569 4.569 5 H 0.080 0.920 6 C -0.135 4.135 7 N -0.526 5.526 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.208 1.208 12 N -0.318 5.318 13 C -0.052 4.052 14 C 0.306 3.694 15 O -0.461 6.461 16 C -0.140 4.140 17 H 0.126 0.874 18 C -0.147 4.147 19 C -0.167 4.167 20 C -0.007 4.007 21 N -0.836 5.836 22 S 2.701 3.299 23 C -0.824 4.824 24 O -0.939 6.939 25 O -0.946 6.946 26 C 0.014 3.986 27 H 0.113 0.887 28 H 0.052 0.948 29 H 0.032 0.968 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.110 0.890 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.147 0.853 43 H 0.114 0.886 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.183 7.534 11.857 14.974 hybrid contribution 0.198 -0.515 -0.322 0.639 sum 5.381 7.019 11.534 14.535 Atomic orbital electron populations 1.22112 0.97917 0.99971 1.00789 1.19175 0.91569 0.93670 0.80746 0.92241 1.21406 1.31905 1.13385 0.90167 0.91992 1.24867 0.94714 0.94936 0.99011 1.69847 1.36229 1.22624 1.23890 0.86446 0.78658 0.79776 0.82636 1.19716 1.20915 1.20814 1.48221 1.43804 1.14881 1.24900 1.21406 0.98441 0.84116 1.01215 1.20261 0.78756 0.88255 0.82085 1.90576 1.55791 1.67713 1.31991 1.21444 0.96703 0.92775 1.03047 0.87371 1.21521 0.97410 0.93839 1.01896 1.21835 0.97387 0.96474 1.01054 1.21496 0.87553 0.92013 0.99681 1.57673 1.25083 1.13696 1.87193 1.04941 0.73935 0.74213 0.76811 1.30612 1.14465 1.11806 1.25544 1.93633 1.77508 1.53536 1.69234 1.93592 1.84006 1.45089 1.71947 1.21152 0.98922 0.78245 1.00285 0.88710 0.94821 0.96845 0.92621 0.94111 0.90933 0.91825 0.91874 0.89816 0.90510 0.90586 0.91534 0.88994 0.85756 0.85571 0.85335 0.88583 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 8.71 37.16 0.32 -2.94 16 2 C 0.25 5.68 1.75 -69.08 -0.12 5.56 16 3 H 0.06 1.40 4.58 -51.93 -0.24 1.17 16 4 C -0.53 -13.61 8.10 -34.44 -0.28 -13.89 16 5 H 0.06 1.64 7.61 -52.49 -0.40 1.24 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -23.39 11.32 55.43 0.63 -22.76 16 8 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 9 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 12 N -0.59 -12.37 2.75 -175.27 -0.48 -12.85 16 13 C 0.09 1.74 9.40 59.84 0.56 2.30 16 14 C 0.52 10.53 6.92 -10.98 -0.08 10.46 16 15 O -0.58 -12.52 15.35 5.56 0.09 -12.43 16 16 C -0.12 -2.05 1.79 -91.87 -0.16 -2.21 16 17 H 0.11 2.14 7.01 -51.93 -0.36 1.77 16 18 C -0.11 -1.63 4.80 -26.69 -0.13 -1.76 16 19 C -0.13 -1.63 6.08 -26.61 -0.16 -1.79 16 20 C 0.12 1.27 6.43 -3.71 -0.02 1.25 16 21 N -1.00 -12.43 3.23 -113.77 -0.37 -12.80 16 22 S 2.61 31.52 6.10 -107.50 -0.66 30.86 16 23 C -0.68 -4.91 10.99 101.05 1.11 -3.80 16 24 O -0.95 -15.41 16.58 -57.54 -0.95 -16.37 16 25 O -0.96 -13.99 16.59 -57.54 -0.95 -14.94 16 26 C 0.14 2.06 5.17 -3.93 -0.02 2.04 16 27 H 0.09 2.28 6.07 -51.92 -0.32 1.96 16 28 H 0.03 0.71 7.56 -51.93 -0.39 0.32 16 29 H 0.01 0.25 7.67 -51.93 -0.40 -0.15 16 30 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 1.39 7.36 -51.93 -0.38 1.01 16 33 H 0.06 1.19 7.22 -51.93 -0.37 0.81 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.08 1.40 5.73 -51.93 -0.30 1.10 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.09 0.90 6.86 -51.93 -0.36 0.55 16 40 H 0.12 0.73 8.14 -51.92 -0.42 0.31 16 41 H 0.13 0.69 8.14 -51.92 -0.42 0.27 16 42 H 0.13 0.83 8.14 -51.92 -0.42 0.40 16 43 H 0.10 1.51 6.85 -51.93 -0.36 1.15 16 44 H 0.08 1.07 7.77 -51.93 -0.40 0.66 16 LS Contribution 353.96 15.07 5.33 5.33 Total: -1.00 -32.42 353.96 -8.25 -40.67 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -6.79 Total: 2.81 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 0.93 Total: -3.12 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: -0.22 Total: -48.41 kcal Atomic # 8 Polarization: -41.92 SS G_CDS: -1.82 Total: -43.74 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 31.52 SS G_CDS: -0.66 Total: 30.86 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.42 -8.25 -40.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442064.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.184 kcal (2) G-P(sol) polarization free energy of solvation -32.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds